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[yade/trunk] 2ae187: Improvements in Law2_ScGeom_CapillaryPhys_Capillar...

 

  Branch: refs/heads/jakob_ifgt
  Home:   https://github.com/yade/trunk
  Commit: 2ae187f4e1b7ce49c063e20fdd0253c4e0a4c85c
      https://github.com/yade/trunk/commit/2ae187f4e1b7ce49c063e20fdd0253c4e0a4c85c
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-03-19 (Mon, 19 Mar 2012)

  Changed paths:
    M pkg/dem/CapillaryPhys.hpp
    M pkg/dem/Ip2_FrictMat_FrictMat_CapillaryPhys.hpp
    M pkg/dem/Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.hpp
    M pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp
    A scripts/scanreplace.pyc
    A site_scons/site_tools/qt4/__init__.pyc
    A yadeSCons.pyc

  Log Message:
  -----------
  Improvements in Law2_ScGeom_CapillaryPhys_Capillarity.cpp (included isBroken flag and updated checkFusion)


  Commit: f2f51857c93cd6a1a03baa67e36f813d6cd991bd
      https://github.com/yade/trunk/commit/f2f51857c93cd6a1a03baa67e36f813d6cd991bd
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-03-20 (Tue, 20 Mar 2012)

  Changed paths:
    R scripts/scanreplace.pyc
    R site_scons/site_tools/qt4/__init__.pyc
    R yadeSCons.pyc

  Log Message:
  -----------
  deleted *.pyc files


  Commit: 01b02b9de976d7848729254777a4a38dd2c30957
      https://github.com/yade/trunk/commit/01b02b9de976d7848729254777a4a38dd2c30957
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-03-20 (Tue, 20 Mar 2012)

  Changed paths:
    M .gitignore
    M doc/sphinx/installation.rst
    M doc/sphinx/templates/index.html
    M yadeSCons.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 09acb060c7d3e6249732e14dd71c655f84cd72be
      https://github.com/yade/trunk/commit/09acb060c7d3e6249732e14dd71c655f84cd72be
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-03-21 (Wed, 21 Mar 2012)

  Changed paths:
    M yadeSCons.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: f2c794d81aadfb7211f542cbc4e737ed460c7d0d
      https://github.com/yade/trunk/commit/f2c794d81aadfb7211f542cbc4e737ed460c7d0d
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-03-21 (Wed, 21 Mar 2012)

  Changed paths:
    M pkg/common/ResetRandomPosition.hpp

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: b2fd11d2425f5756be861e46c8d33856fcb2671b
      https://github.com/yade/trunk/commit/b2fd11d2425f5756be861e46c8d33856fcb2671b
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-03-26 (Mon, 26 Mar 2012)

  Changed paths:
    A examples/ResetRandomPosition.py
    A examples/baraban/rotating-cylinder.py
    A examples/clumps/clump-hopper-viscoelastic.py
    A examples/clumps/clump-inbox-viscoelastic.py
    A examples/clumps/clump-viscoelastic.py
    A examples/gts-horse/gts-horse.py
    A examples/gts-horse/gts-operators.py
    A examples/gts-horse/gts-random-pack-obb.py
    A examples/gts-horse/gts-random-pack.py
    A examples/gts-horse/horse.coarse.gts
    R examples/not-working/ResetRandomPosition.py
    R examples/not-working/clump-hopper-viscoelastic.py
    R examples/not-working/clump-inbox-viscoelastic.py
    R examples/not-working/clump-viscoelastic.py
    R examples/not-working/gts-horse/gts-horse.py
    R examples/not-working/gts-horse/gts-operators.py
    R examples/not-working/gts-horse/gts-random-pack-obb.py
    R examples/not-working/gts-horse/gts-random-pack.py
    R examples/not-working/gts-horse/horse.coarse.gts
    R examples/not-working/rotating-cylinder.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: c9db8b0ccf360ac27610967c37370162f546e036
      https://github.com/yade/trunk/commit/c9db8b0ccf360ac27610967c37370162f546e036
  Author: Anton Gladky <gladky.anton@xxxxxxxxx>
  Date:   2012-03-26 (Mon, 26 Mar 2012)

  Changed paths:
    A examples/ResetRandomPosition.py
    A examples/baraban/rotating-cylinder.py
    A examples/clumps/clump-hopper-viscoelastic.py
    A examples/clumps/clump-inbox-viscoelastic.py
    A examples/clumps/clump-viscoelastic.py
    R examples/not-working/ResetRandomPosition.py
    R examples/not-working/clump-hopper-viscoelastic.py
    R examples/not-working/clump-inbox-viscoelastic.py
    R examples/not-working/clump-viscoelastic.py
    R examples/not-working/rotating-cylinder.py

  Log Message:
  -----------
  Fix some examples.


  Commit: 1025779dd02d63c699b482b3f60bff3c28a3e11b
      https://github.com/yade/trunk/commit/1025779dd02d63c699b482b3f60bff3c28a3e11b
  Author: Anton Gladky <gladky.anton@xxxxxxxxx>
  Date:   2012-03-26 (Mon, 26 Mar 2012)

  Changed paths:
    A examples/gts-horse/gts-horse.py
    A examples/gts-horse/gts-operators.py
    A examples/gts-horse/gts-random-pack-obb.py
    A examples/gts-horse/gts-random-pack.py
    A examples/gts-horse/horse.coarse.gts
    R examples/not-working/gts-horse/gts-horse.py
    R examples/not-working/gts-horse/gts-operators.py
    R examples/not-working/gts-horse/gts-random-pack-obb.py
    R examples/not-working/gts-horse/gts-random-pack.py
    R examples/not-working/gts-horse/horse.coarse.gts

  Log Message:
  -----------
  Reenable gts-scripts.


  Commit: cca6c0265334956075208da581eabbabbbf5fd89
      https://github.com/yade/trunk/commit/cca6c0265334956075208da581eabbabbbf5fd89
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-04-11 (Wed, 11 Apr 2012)

  Changed paths:
    M SConstruct
    M core/Body.hpp
    M core/BodyContainer.cpp
    M core/main/main.py.in
    M doc/sphinx/installation.rst
    M doc/sphinx/templates/index.html
    M doc/yade-articles.bib
    M pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp
    M py/geom.py
    M py/pack/pack.py
    M py/runtime.py

  Log Message:
  -----------
  test


  Commit: 0f1b9682be71e9e2aae26b9ed6a2a0732f21612e
      https://github.com/yade/trunk/commit/0f1b9682be71e9e2aae26b9ed6a2a0732f21612e
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-04-11 (Wed, 11 Apr 2012)

  Changed paths:
    M doc/sphinx/introduction.rst
    A pkg/common/CylScGeom6D.cpp
    A pkg/common/CylScGeom6D.hpp
    M pkg/common/Cylinder.cpp
    M pkg/common/Cylinder.hpp

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: b5b3c6379b01d11746ee88d36bb8885b1a4bb7c4
      https://github.com/yade/trunk/commit/b5b3c6379b01d11746ee88d36bb8885b1a4bb7c4
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-04-11 (Wed, 11 Apr 2012)

  Log Message:
  -----------
  Merge branch 'master' of github.com:jakob-ifgt/trunk


  Commit: 89e73bbc54dfee2b52d954a23f20717e1a36c642
      https://github.com/yade/trunk/commit/89e73bbc54dfee2b52d954a23f20717e1a36c642
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-04-17 (Tue, 17 Apr 2012)

  Changed paths:
    M .kdev4/yade.kdev4
    M CMakeLists.txt
    M SConstruct
    M core/main/main.py.in
    M core/main/pyboot.cpp
    M doc/sphinx/conf.py
    M doc/sphinx/installation.rst
    M doc/sphinx/introduction.rst
    A doc/sphinx/ipython_directive012.py
    M doc/sphinx/prog.rst
    M doc/sphinx/yadeSphinx.py
    A examples/CohesiveCylinderSphere.py
    M examples/clumps/clump-hopper-viscoelastic.py
    M examples/clumps/clump-inbox-viscoelastic.py
    M examples/clumps/clump-viscoelastic.py
    M examples/concrete/periodic.py
    M examples/not-working/facet-topo.py
    M examples/not-working/insertion-sort-collider.py
    M examples/not-working/periodic-compress.py
    M examples/not-working/periodic-grow.py
    M examples/packs/packs.py
    M examples/simpleShear.py
    M examples/test/WireMatPM/net-2part-displ-unloading.py
    M examples/test/WireMatPM/net-2part-strain.py
    M examples/test/collider-stride-triax.py
    M examples/test/collider-stride.py
    M examples/test/facet-sphere.py
    M examples/test/flat-collider.py
    M examples/test/periodic-geom-compare.py
    M examples/test/periodic-shear.py
    M examples/test/periodic-simple-shear.py
    M examples/test/periodic-simple.py
    M examples/test/periodic-triax-settingHsize.py
    M examples/test/periodic-triax.py
    M examples/test/subdomain-balancer.py
    M examples/test/wall.py
    M gui/qt4/_GLViewer.cpp
    M lib/base/Logging.hpp
    M lib/triangulation/FlowBoundingSphere.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/Network.hpp
    M lib/triangulation/Network.ipp
    M lib/triangulation/def_types.h
    M pkg/common/Cylinder.cpp
    M pkg/dem/DomainLimiter.cpp
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M pkg/dem/PeriIsoCompressor.cpp
    M pkg/dem/PeriIsoCompressor.hpp
    M py/SConscript
    M py/__init__.py.in
    M py/_eudoxos.cpp
    M py/_utils.cpp
    R py/log.cpp
    M py/pack/_packPredicates.cpp
    M py/pack/pack.py
    M py/system.py
    M py/tests/__init__.py
    M py/wrapper/yadeWrapper.cpp
    M scripts/checks-and-tests/checks/checkTestDummy.py
    M scripts/checks-and-tests/checks/checkTestTriax.py
    M scripts/checks-and-tests/checks/checkWeight.py
    M scripts/checks-and-tests/compare-identical.py
    M scripts/checks-and-tests/law-test.py
    M scripts/checks-and-tests/serialization-benchmark.py
    M yadeSCons.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 40504e3c9d9073acde7591167e58ac6cf8581663
      https://github.com/yade/trunk/commit/40504e3c9d9073acde7591167e58ac6cf8581663
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-04-23 (Mon, 23 Apr 2012)

  Changed paths:
    M pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp

  Log Message:
  -----------
  make fusionDetection and isBroken flag compatible


  Commit: 29186270a9f99fac881da0493ec5820a1bb30f57
      https://github.com/yade/trunk/commit/29186270a9f99fac881da0493ec5820a1bb30f57
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-04-23 (Mon, 23 Apr 2012)

  Changed paths:
    M examples/clumps/clump-viscoelastic.py
    M examples/gts-horse/gts-horse.py
    M examples/packs/packs.py
    M examples/triax-tutorial/script-session1.py
    M examples/triax-tutorial/script-session2.py
    M lib/triangulation/FlowBoundingSphere.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/PeriodicFlow.cpp
    M lib/triangulation/PeriodicFlow.hpp
    M lib/triangulation/def_types.h
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M py/pack/pack.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 567f75d5a0a7aeb8686064813e7adff63ead0208
      https://github.com/yade/trunk/commit/567f75d5a0a7aeb8686064813e7adff63ead0208
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-04-24 (Tue, 24 Apr 2012)

  Changed paths:
    M SConstruct
    M core/Body.hpp
    M core/BodyContainer.cpp
    M core/BodyContainer.hpp
    M core/Interaction.cpp
    M core/Interaction.hpp
    M lib/import/STLReader.hpp
    M lib/triangulation/FlowBoundingSphere.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M pkg/common/Cylinder.cpp
    M pkg/common/InteractionLoop.cpp
    M pkg/common/OpenGLRenderer.cpp
    M pkg/common/OpenGLRenderer.hpp
    R pkg/common/SubdomainBalancer.cpp
    R pkg/common/SubdomainBalancer.hpp
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp
    M pkg/dem/ViscoelasticPM.cpp
    M py/SConscript
    M py/pack/SpherePadder/SpherePadder.cpp
    M py/tests/wrapper.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 4182c708217549c18cb3c918b8848911337a4055
      https://github.com/yade/trunk/commit/4182c708217549c18cb3c918b8848911337a4055
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-04-27 (Fri, 27 Apr 2012)

  Changed paths:
    M examples/packs/packs.py
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/PeriodicFlow.cpp
    M lib/triangulation/Tesselation.ipp
    M lib/triangulation/def_types.h
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M py/geom.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 96ad7214888b19ca71c9eeaa7c36d68e0563c0ec
      https://github.com/yade/trunk/commit/96ad7214888b19ca71c9eeaa7c36d68e0563c0ec
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-05-07 (Mon, 07 May 2012)

  Changed paths:
    M CMakeLists.txt
    M SConstruct
    M doc/sphinx/formulation.rst
    M doc/sphinx/installation.rst
    M doc/sphinx/prog.rst
    M examples/test/CundallStrackTest.py
    A examples/test/WireMatPM/net-2part-displ-unloading.py
    R examples/test/WireMatPM/net-2part-displ-unloading.py
    R examples/test/WireMatPM/net-2part-displ.py
    A examples/test/WireMatPM/net-2part-displ.py
    R examples/test/WireMatPM/net-2part-strain.py
    A examples/test/WireMatPM/net-2part-strain.py
    M examples/test/exact-rot-facet.py
    M examples/test/exact-rot.py
    M lib/import/STLReader.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/PeriodicFlow.cpp
    M lib/triangulation/PeriodicFlow.hpp
    M pkg/common/InsertionSortCollider.hpp
    M pkg/common/ZECollider.hpp
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M pkg/dem/GlobalStiffnessTimeStepper.hpp
    M pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp
    M pkg/dem/VTKRecorder.hpp
    M py/_utils.cpp
    M py/geom.py
    M py/pack/SpherePadder/SpherePadder.cpp
    M py/pack/pack.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 9f4e3e667b05a2e44d506738fea6da84a5b4a9c8
      https://github.com/yade/trunk/commit/9f4e3e667b05a2e44d506738fea6da84a5b4a9c8
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-05-07 (Mon, 07 May 2012)

  Changed paths:
    M pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp
    A pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp~

  Log Message:
  -----------
  improvements in Law2_ScGeom_CapillaryPhys_Capillarity


  Commit: c04eff6d5d2b71ffa95a2fc9c5721670cc87c9de
      https://github.com/yade/trunk/commit/c04eff6d5d2b71ffa95a2fc9c5721670cc87c9de
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-05-07 (Mon, 07 May 2012)

  Changed paths:
    R pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp~

  Log Message:
  -----------
  removed backup file Law2_ScGeom_CapillaryPhys_Capillarity.cpp~


  Commit: b6236a0effe33eac85c46fa3195b0a982abd1a12
      https://github.com/yade/trunk/commit/b6236a0effe33eac85c46fa3195b0a982abd1a12
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-05-10 (Thu, 10 May 2012)

  Changed paths:
    M pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp

  Log Message:
  -----------
  Fix memory leak in capillary law and make isBroken flag compatible with fusionDetection


  Commit: 01fb063c0ab698d8da7ad1d8c17afeaca91090f7
      https://github.com/yade/trunk/commit/01fb063c0ab698d8da7ad1d8c17afeaca91090f7
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-06-20 (Wed, 20 Jun 2012)

  Changed paths:
    M CMakeLists.txt
    M SConstruct
    A cMake/CombineSources.cmake
    A cMake/FindEigen2.cmake
    A cMake/FindEigen3.cmake
    A cMake/Findglib2.cmake
    A cMake/GetVersion.cmake
    M core/BodyContainer.cpp
    M core/Cell.hpp
    M core/SimulationFlow.cpp
    M core/ThreadRunner.cpp
    M lib/SConscript
    M pkg/common/InteractionLoop.hpp
    M pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp
    M py/export.py
    M py/ymport.py

  Log Message:
  -----------
  try to update/merge


  Commit: 6e3707385a7ce9dbbf5a24f199bbf06e42a8fbfa
      https://github.com/yade/trunk/commit/6e3707385a7ce9dbbf5a24f199bbf06e42a8fbfa
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-06-20 (Wed, 20 Jun 2012)

  Changed paths:
    M CMakeLists.txt
    M SConstruct
    R cMake/CombineSources.cmake
    A cMake/FindCGAL.cmake
    A cMake/FindGL2PS.cmake
    A cMake/FindGTS.cmake
    A cMake/FindQGLVIEWER.cmake
    M cMake/GetVersion.cmake
    M core/BodyContainer.cpp
    M core/Cell.hpp
    M core/Scene.hpp
    M core/main/main.py.in
    M doc/sphinx/installation.rst
    A gui/CMakeLists.txt
    M gui/qt4/GLViewer.hpp
    M gui/qt4/OpenGLManager.hpp
    M lib/base/openmp-accu.hpp
    M lib/triangulation/FlowBoundingSphere.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/PeriodicFlow.cpp
    M lib/triangulation/PeriodicFlow.hpp
    M lib/triangulation/def_types.h
    M pkg/common/InsertionSortCollider.cpp
    M pkg/common/InsertionSortCollider.hpp
    M pkg/dem/ElasticContactLaw.cpp
    M pkg/dem/ElasticContactLaw.hpp
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M pkg/dem/FrictPhys.cpp
    M pkg/dem/FrictPhys.hpp
    M pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.cpp
    M pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.hpp
    M pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp
    M pkg/dem/NewtonIntegrator.cpp
    M pkg/dem/NewtonIntegrator.hpp
    M pkg/dem/PeriIsoCompressor.cpp
    M pkg/dem/Shop.cpp
    M pkg/dem/Shop.hpp
    M pkg/dem/VTKRecorder.cpp
    A py/CMakeLists.txt
    M py/__init__.py.in
    M py/_utils.cpp
    M py/bodiesHandling.py
    M py/config.py.in
    M py/export.py
    M py/geom.py
    M py/pack/pack.py
    M py/tests/core.py
    M py/ymport.py

  Log Message:
  -----------
  try to update/merge 2


  Commit: ff92861d714c3bae50ad01c03db10018783cf314
      https://github.com/yade/trunk/commit/ff92861d714c3bae50ad01c03db10018783cf314
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-06-20 (Wed, 20 Jun 2012)

  Changed paths:
    M pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp

  Log Message:
  -----------
  fix last commit


  Commit: cc040a1a542d715433ea357410f95fe352a735de
      https://github.com/yade/trunk/commit/cc040a1a542d715433ea357410f95fe352a735de
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-07-04 (Wed, 04 Jul 2012)

  Changed paths:
    M CMakeLists.txt
    A cMake/FindCholmod.cmake
    A cMake/FindGMP.cmake
    A cMake/FindGMPXX.cmake
    M cMake/GetVersion.cmake
    M core/Cell.hpp
    M core/main/main.py.in
    M core/main/yade-batch.in
    M doc/sphinx/installation.rst
    M doc/sphinx/prog.rst
    M examples/baraban/rotating-cylinder.py
    M examples/funnel.py
    M examples/mill.py
    M examples/not-working/insertion-sort-collider.py
    M examples/not-working/periodic-compress.py
    M examples/not-working/periodic-grow.py
    M examples/ring2d/ringCundallDamping.py
    M examples/rod-penetration/model.py
    M examples/test/collider-stride.py
    M examples/test/collider-sweep-simple.py
    M examples/test/facet-sphere.py
    M examples/test/flat-collider.py
    M examples/test/peri3dController_triaxialCompression.py
    M examples/test/periodic-geom-compare.py
    M examples/test/periodic-shear.py
    M examples/test/periodic-simple.py
    M examples/test/remove-body.py
    M examples/test/test-sphere-facet-corner.py
    M examples/test/test-sphere-facet.py
    M examples/test/wall.py
    M lib/triangulation/FlowBoundingSphere.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/Network.hpp
    M lib/triangulation/Network.ipp
    M lib/triangulation/def_types.h
    M pkg/common/Bo1_Sphere_Aabb.hpp
    M pkg/common/Cylinder.hpp
    M pkg/common/InsertionSortCollider.hpp
    M pkg/dem/CohFrictPhys.hpp
    R pkg/dem/CohesionlessMomentRotation.cpp
    R pkg/dem/CohesionlessMomentRotation.hpp
    M pkg/dem/CohesiveFrictionalContactLaw.cpp
    M pkg/dem/CohesiveFrictionalContactLaw.hpp
    M pkg/dem/CohesiveFrictionalPM.cpp
    R pkg/dem/CundallStrack.cpp
    R pkg/dem/CundallStrack.hpp
    M pkg/dem/ElasticContactLaw.cpp
    M pkg/dem/ElasticContactLaw.hpp
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M pkg/dem/Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.cpp
    M pkg/dem/PeriIsoCompressor.cpp
    M pkg/dem/Shop.cpp
    M pkg/dem/Shop.hpp
    M pkg/dem/TriaxialTest.cpp
    M py/_utils.cpp
    M py/config.py.in
    M py/pack/pack.py
    M py/system.py
    M py/tests/wrapper.py
    M py/wrapper/yadeWrapper.cpp

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 0e92e173d5a4fb656322f29961a9f465e8910ea9
      https://github.com/yade/trunk/commit/0e92e173d5a4fb656322f29961a9f465e8910ea9
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-07-09 (Mon, 09 Jul 2012)

  Changed paths:
    M CMakeLists.txt
    A cMake/CombineSources.cmake
    M doc/sphinx/installation.rst
    M lib/triangulation/FlowBoundingSphere.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/Network.hpp
    M lib/triangulation/Network.ipp
    M lib/triangulation/PeriodicFlow.cpp
    M lib/triangulation/PeriodicFlow.hpp
    M lib/triangulation/Tesselation.h
    M lib/triangulation/Tesselation.ipp
    M lib/triangulation/def_types.h
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M pkg/dem/Ig2_Sphere_Sphere_ScGeom.hpp
    M py/runtime.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 8738de4bcb680eaf1a6f58e66cb8478e0d204ca9
      https://github.com/yade/trunk/commit/8738de4bcb680eaf1a6f58e66cb8478e0d204ca9
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-07-18 (Wed, 18 Jul 2012)

  Changed paths:
    M .gitignore
    R SConscript
    R SConstruct
    M core/Body.hpp
    M core/Cell.hpp
    M core/Interaction.hpp
    M core/InteractionContainer.cpp
    R core/SConscript
    M core/Scene.hpp
    M core/SimulationFlow.cpp
    M core/main/main.py.in
    M doc/references.bib
    M doc/sphinx/conf.py
    A doc/sphinx/fig/localstrain.png
    M doc/sphinx/installation.rst
    M doc/sphinx/introduction.rst
    M doc/sphinx/prog.rst
    M doc/yade-conferences.bib
    A examples/tesselationWrapper.py
    M examples/test/triax-basic.py
    R extra/SConscript
    R gui/SConscript
    R lib/SConscript
    M lib/triangulation/FlowBoundingSphere.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/PeriodicFlow.cpp
    M lib/triangulation/PeriodicFlow.hpp
    M lib/triangulation/TriaxialState.cpp
    M pkg/dem/CohesiveFrictionalContactLaw.hpp
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M pkg/dem/MicroMacroAnalyser.cpp
    M pkg/dem/TesselationWrapper.hpp
    R py/SConscript
    M py/config.py.in
    M py/runtime.py
    M py/utils.py
    R yadeSCons.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 00d3fe851622cf61e5978661001b001b2c5e9ac2
      https://github.com/yade/trunk/commit/00d3fe851622cf61e5978661001b001b2c5e9ac2
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-07-18 (Wed, 18 Jul 2012)

  Changed paths:
    A scons.current-profile
    A scons.profile-default

  Log Message:
  -----------
  merge branch


  Commit: f6891cc34e5fea0eced71195bf9e4e6cc9eb893d
      https://github.com/yade/trunk/commit/f6891cc34e5fea0eced71195bf9e4e6cc9eb893d
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-07-18 (Wed, 18 Jul 2012)

  Changed paths:
    R scons.current-profile
    R scons.profile-default

  Log Message:
  -----------
  merge branch without local scons files


  Commit: cb0cb9b3f586a39953e3ef95e1a584e593863d3a
      https://github.com/yade/trunk/commit/cb0cb9b3f586a39953e3ef95e1a584e593863d3a
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-07-18 (Wed, 18 Jul 2012)

  Changed paths:
    M pkg/dem/Shop.cpp
    M pkg/dem/Shop.hpp
    M py/_utils.cpp

  Log Message:
  -----------
  include calm function


  Commit: 52ef0f0884264a93d02fa0c3c14034d34f761151
      https://github.com/yade/trunk/commit/52ef0f0884264a93d02fa0c3c14034d34f761151
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-07-18 (Wed, 18 Jul 2012)

  Changed paths:
    M pkg/dem/Shop.cpp

  Log Message:
  -----------
  fix mask bug in calm function


  Commit: 7d204b604218ea6c3e11a91f982ea2290e46c734
      https://github.com/yade/trunk/commit/7d204b604218ea6c3e11a91f982ea2290e46c734
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-07-19 (Thu, 19 Jul 2012)

  Changed paths:
    M pkg/dem/VTKRecorder.cpp
    M pkg/dem/VTKRecorder.hpp

  Log Message:
  -----------
  export boxes with vtkrecorder (not tested, boxesCells missing)


  Commit: f34ce263bad3df4083689c8a0814e9ecf2c97b59
      https://github.com/yade/trunk/commit/f34ce263bad3df4083689c8a0814e9ecf2c97b59
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-07-19 (Thu, 19 Jul 2012)

  Changed paths:
    M pkg/dem/VTKRecorder.cpp
    M pkg/dem/VTKRecorder.hpp

  Log Message:
  -----------
  export boxes with vtkrecorder (visualization works, but is not ok)


  Commit: f1cebc02fc8632060b03e5b4d0148c27509125fb
      https://github.com/yade/trunk/commit/f1cebc02fc8632060b03e5b4d0148c27509125fb
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-07-25 (Wed, 25 Jul 2012)

  Changed paths:
    M pkg/dem/Ig2_Sphere_Sphere_ScGeom.hpp
    M pkg/dem/ScGeom.hpp
    M pkg/dem/TesselationWrapper.hpp
    M pkg/dem/VTKRecorder.cpp
    M pkg/dem/VTKRecorder.hpp
    M py/pack/_packSpheres.cpp

  Log Message:
  -----------
  merge branch


  Commit: bbe19eec6348616f5c25e536af9b0aec245f39fb
      https://github.com/yade/trunk/commit/bbe19eec6348616f5c25e536af9b0aec245f39fb
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-08-22 (Wed, 22 Aug 2012)

  Changed paths:
    M CMakeLists.txt
    M core/BodyContainer.cpp
    A core/Clump.cpp
    A core/Clump.hpp
    M doc/sphinx/installation.rst
    M doc/yade-conferences.bib
    M examples/concrete/periodic.py
    M examples/concrete/uniax.py
    M examples/test/peri3dController_example1.py
    M examples/test/peri3dController_shear.py
    A examples/test/test_Ip2_FrictMat_CpmMat_FrictPhys.py
    M lib/opengl/OpenGLWrapper.hpp
    M lib/triangulation/FlowBoundingSphere.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/Network.ipp
    M lib/triangulation/PeriodicFlow.cpp
    M lib/triangulation/PeriodicFlow.hpp
    M lib/triangulation/def_types.h
    M pkg/common/OpenGLRenderer.cpp
    R pkg/dem/Clump.cpp
    R pkg/dem/Clump.hpp
    M pkg/dem/ConcretePM.cpp
    M pkg/dem/ConcretePM.hpp
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M pkg/dem/GlobalStiffnessTimeStepper.cpp
    M pkg/dem/NewtonIntegrator.cpp
    M pkg/dem/RockPM.hpp
    M pkg/dem/Shop.cpp
    M pkg/dem/VTKRecorder.cpp
    M py/export.py
    M py/wrapper/yadeWrapper.cpp
    M py/ymport.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 5b7a02b1d51f479c8fb0ac3a9865f1269b54fce4
      https://github.com/yade/trunk/commit/5b7a02b1d51f479c8fb0ac3a9865f1269b54fce4
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-09-26 (Wed, 26 Sep 2012)

  Changed paths:
    M CMakeLists.txt
    A README.rst
    M cMake/GetVersion.cmake
    M core/Body.hpp
    M core/FileGenerator.cpp
    M core/InteractionContainer.cpp
    M core/State.hpp
    M core/main/main.py.in
    M doc/references.bib
    M doc/sphinx/citing.rst
    M doc/sphinx/formulation.rst
    M doc/sphinx/installation.rst
    M doc/sphinx/prog.rst
    M doc/sphinx/tutorial-hands-on.rst
    M doc/sphinx/user.rst
    M doc/sphinx/yade.bodiesHandling.rst
    M doc/sphinx/yade.geom.rst
    M doc/sphinx/yadeSphinx.py
    M doc/yade-articles.bib
    M doc/yade-conferences.bib
    M doc/yade-theses.bib
    R examples/CohesiveCylinderSphere.py
    A examples/chained-cylinders/CohesiveCylinderSphere.py
    A examples/chained-cylinders/chained-cylinder-roots.py
    A examples/chained-cylinders/chained-cylinder-spring.py
    A examples/clumps/triax-basic-with-clumps.py
    R examples/test/chained-cylinder/chained-cylinder-roots.py
    R examples/test/chained-cylinder/chained-cylinder-spring.py
    M examples/test/triax-basic.py
    A examples/test/triax-cohesive.py
    A examples/test/unv-read/unvReadVTKExport.py
    A examples/timeStepperUsage.py
    M gui/qt4/GLViewer.hpp
    M gui/qt4/_GLViewer.cpp
    M gui/qt4/__init__.py
    M lib/base/Math.hpp
    M lib/triangulation/FlowBoundingSphere.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/PeriodicFlow.cpp
    M pkg/common/Cylinder.cpp
    M pkg/common/Cylinder.hpp
    M pkg/common/Gl1_NormPhys.hpp
    M pkg/common/Gl1_Sphere.hpp
    M pkg/common/InsertionSortCollider.hpp
    M pkg/common/KinematicEngines.hpp
    M pkg/common/ZECollider.hpp
    M pkg/dem/CohesiveFrictionalContactLaw.cpp
    M pkg/dem/ConcretePM.cpp
    M pkg/dem/ConcretePM.hpp
    M pkg/dem/FlatGridCollider.hpp
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M pkg/dem/GlobalStiffnessTimeStepper.cpp
    M pkg/dem/GlobalStiffnessTimeStepper.hpp
    M pkg/dem/Ig2_Sphere_Sphere_ScGeom.hpp
    M pkg/dem/L3Geom.hpp
    M pkg/dem/NewtonIntegrator.cpp
    M pkg/dem/NewtonIntegrator.hpp
    M pkg/dem/PeriIsoCompressor.cpp
    M pkg/dem/PeriIsoCompressor.hpp
    M pkg/dem/RockPM.cpp
    M pkg/dem/RockPM.hpp
    M pkg/dem/ScGeom.hpp
    M pkg/dem/Shop.cpp
    M pkg/dem/Shop.hpp
    M pkg/dem/TesselationWrapper.hpp
    M pkg/dem/TriaxialCompressionEngine.cpp
    M pkg/dem/TriaxialCompressionEngine.hpp
    M pkg/dem/TriaxialTest.hpp
    M pkg/dem/VTKRecorder.hpp
    M pkg/dem/ViscoelasticPM.cpp
    M pkg/dem/ViscoelasticPM.hpp
    M py/3rd-party/pygts-0.3.1/__init__.py
    M py/_extraDocs.py
    M py/_utils.cpp
    M py/bodiesHandling.py
    M py/export.py
    M py/geom.py
    M py/pack/pack.py
    M py/plot.py
    M py/tests/cohesive-chain.py
    M py/tests/core.py
    M py/utils.py
    M py/wrapper/yadeWrapper.cpp
    M py/ymport.py

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 48ebd9262146c4f3ffe0932a66329cd99510f1df
      https://github.com/yade/trunk/commit/48ebd9262146c4f3ffe0932a66329cd99510f1df
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-09-27 (Thu, 27 Sep 2012)

  Changed paths:
    M examples/concrete/periodic.py
    M examples/concrete/uniax.py

  Log Message:
  -----------
  fix uniax.py and periodic.py example scripts


  Commit: 36f93d4893282dfaf4ea4ff1d0050ad93be52541
      https://github.com/yade/trunk/commit/36f93d4893282dfaf4ea4ff1d0050ad93be52541
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-09-28 (Fri, 28 Sep 2012)

  Changed paths:
    M examples/ResetRandomPosition.py
    A examples/chained-cylinders/cloud4cylinders90
    A examples/concrete/cpm-dem3dof-scgeom.py
    A examples/concrete/periCube.pickle
    M examples/gts-horse/gts-horse.py
    M examples/gts-horse/gts-operators.py
    A examples/hdaps.py
    M examples/normalInelasticity-test.py
    R examples/not-working/cpm-dem3dof-scgeom.py
    R examples/not-working/hdaps.py
    R examples/not-working/periodic-compress.py
    R examples/not-working/periodic-grow.py
    A examples/periodic-compress.py
    A examples/periodic-grow.py
    M examples/simple-scene/simple-scene-plot.py
    A examples/simple-shear/simpleShear.py
    R examples/simpleShear.py
    R examples/tesselationWrapper.py
    A examples/tesselationwrapper/tesselationWrapper.py
    M examples/triax-tutorial/script-session1.py
    M examples/triax-tutorial/script-session2.py

  Log Message:
  -----------
  ?fix and improvements of some example scripts


  Commit: ec4ebfbf0d5a872f28af4927f7e88e5315082f39
      https://github.com/yade/trunk/commit/ec4ebfbf0d5a872f28af4927f7e88e5315082f39
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2012-09-28 (Fri, 28 Sep 2012)

  Changed paths:
    R examples/chained-cylinders/cloud4cylinders90

  Log Message:
  -----------
  delete unneeded file


  Commit: 56a4887117922f8806d57722fb9a475da407bb8e
      https://github.com/yade/trunk/commit/56a4887117922f8806d57722fb9a475da407bb8e
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2013-01-18 (Fri, 18 Jan 2013)

  Changed paths:
    M CMakeLists.txt
    M core/Cell.hpp
    M core/Engine.hpp
    M core/main/main.py.in
    M core/main/yade-batch.in
    M doc/sphinx/conf.py
    M doc/sphinx/installation.rst
    M doc/sphinx/introduction.rst
    M doc/sphinx/user.rst
    M doc/sphinx/yadeSphinx.py
    M doc/yade-articles.bib
    A doc/yade-logo-note.png
    M doc/yade-theses.bib
    A examples/grids/Simple_Grid_Falling.py
    R examples/not-working/SpherePadder-test.msh
    R examples/not-working/SpherePadder.py
    A examples/simple-scene/simple-scene-default-engines.py
    A examples/test/combined-kinematic-engine.py
    M examples/test/performance/checkPerf.py
    M examples/test/peri3dController_example1.py
    M examples/test/peri3dController_shear.py
    M examples/triax-tutorial/script-session1.py
    M examples/triax-tutorial/session1-basic-triax.pdf
    M gui/CMakeLists.txt
    M gui/qt4/GLViewer.cpp
    M gui/qt4/GLViewer.hpp
    M gui/qt4/_GLViewer.cpp
    M lib/triangulation/FlowBoundingSphere.hpp
    M lib/triangulation/FlowBoundingSphere.ipp
    M lib/triangulation/PeriodicFlow.cpp
    M lib/triangulation/PeriodicFlow.hpp
    M lib/triangulation/def_types.h
    M pkg/common/Collider.cpp
    M pkg/common/Collider.hpp
    M pkg/common/CylScGeom6D.hpp
    M pkg/common/Cylinder.cpp
    M pkg/common/Cylinder.hpp
    M pkg/common/Gl1_Sphere.hpp
    A pkg/common/Grid.cpp
    A pkg/common/Grid.hpp
    M pkg/common/InteractionLoop.cpp
    M pkg/common/ParallelEngine.cpp
    M pkg/common/ParallelEngine.hpp
    M pkg/dem/CapillaryTriaxialTest.cpp
    M pkg/dem/CohFrictMat.hpp
    M pkg/dem/CohFrictPhys.hpp
    M pkg/dem/CohesiveTriaxialTest.cpp
    M pkg/dem/ConcretePM.hpp
    M pkg/dem/ElasticContactLaw.hpp
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/FlowEngine.hpp
    M pkg/dem/Ig2_Sphere_Sphere_ScGeom.hpp
    A pkg/dem/InelastCohFrictMat.cpp
    A pkg/dem/InelastCohFrictMat.hpp
    A pkg/dem/InelastCohFrictPhys.cpp
    A pkg/dem/InelastCohFrictPhys.hpp
    A pkg/dem/Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.cpp
    A pkg/dem/Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.hpp
    M pkg/dem/Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.cpp
    M pkg/dem/Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.hpp
    A pkg/dem/Law2_ScGeom6D_InelastCohFrictPhys_CohesionMoment.cpp
    A pkg/dem/Law2_ScGeom6D_InelastCohFrictPhys_CohesionMoment.hpp
    M pkg/dem/NewtonIntegrator.cpp
    M pkg/dem/PeriIsoCompressor.cpp
    M pkg/dem/SampleCapillaryPressureEngine.hpp
    M pkg/dem/ScGeom.cpp
    M pkg/dem/ScGeom.hpp
    M pkg/dem/Shop.cpp
    M pkg/dem/Shop.hpp
    M pkg/dem/SimpleShear.hpp
    A pkg/dem/SnapshotEngine.cpp
    A pkg/dem/SnapshotEngine.hpp
    M pkg/dem/SpherePack.cpp
    M pkg/dem/SpheresFactory.cpp
    M pkg/dem/SpheresFactory.hpp
    M pkg/dem/ThreeDTriaxialEngine.hpp
    M pkg/dem/TriaxialCompressionEngine.cpp
    M pkg/dem/VTKRecorder.cpp
    M py/3rd-party/boost-python-indexing-suite-v2-noSymlinkHeaders/algorithms.hpp
    M py/__init__.py.in
    M py/_utils.cpp
    M py/export.py
    M py/geom.py
    R py/pack/SpherePadder/CellPartition.cpp
    R py/pack/SpherePadder/CellPartition.hpp
    R py/pack/SpherePadder/SpherePackingTriangulation.cpp
    R py/pack/SpherePadder/SpherePackingTriangulation.hpp
    R py/pack/SpherePadder/SpherePadder.cpp
    R py/pack/SpherePadder/SpherePadder.hpp
    R py/pack/SpherePadder/TetraMesh.cpp
    R py/pack/SpherePadder/TetraMesh.hpp
    R py/pack/SpherePadder/main.cpp
    R py/pack/_packSpherePadder.cpp
    M py/pack/pack.py
    M py/utils.py
    M py/wrapper/yadeWrapper.cpp
    M py/ymport.py
    M scripts/linkdeps.py

  Log Message:
  -----------
  try to merge: problem with script-session1.py from triax-tutorial, sorry


  Commit: efad135fe7ec9592d51860bc83c5e7aaed825214
      https://github.com/yade/trunk/commit/efad135fe7ec9592d51860bc83c5e7aaed825214
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2013-01-23 (Wed, 23 Jan 2013)

  Changed paths:
    M doc/yade-articles.bib
    M doc/yade-conferences.bib
    M pkg/dem/FlowEngine.cpp
    M pkg/dem/SpherePack.cpp
    M pkg/dem/SpherePack.hpp
    M py/pack/_packSpheres.cpp

  Log Message:
  -----------
  Merge remote branch 'upstream/master'


  Commit: 0f0a737a45b3ac88905b3bbc697b72a823d97aef
      https://github.com/yade/trunk/commit/0f0a737a45b3ac88905b3bbc697b72a823d97aef
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2013-01-23 (Wed, 23 Jan 2013)

  Changed paths:
    M py/wrapper/yadeWrapper.cpp

  Log Message:
  -----------
  add addToClump() method in yadeWrapper


  Commit: 9bdca6ada22bf2685e16b8543329277f6c9732c9
      https://github.com/yade/trunk/commit/9bdca6ada22bf2685e16b8543329277f6c9732c9
  Author: Christian Jakob <jakob@xxxxxxxxxxxxxxxxxxx>
  Date:   2013-01-31 (Thu, 31 Jan 2013)

  Changed paths:
    M core/Clump.cpp
    M py/wrapper/yadeWrapper.cpp

  Log Message:
  -----------
  improvements in clump logic - part 1


Compare: https://github.com/yade/trunk/compare/2ae187f4e1b7^...9bdca6ada22b