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Message #11544
[Branch ~yade-pkg/yade/git-trunk] Rev 3484: Merge doc/sphinx/references.bib into doc/references.bib
------------------------------------------------------------
revno: 3484
committer: Janek Kozicki <janek@xxxxxxxxxx>
timestamp: Thu 2014-10-16 14:19:03 +0200
message:
Merge doc/sphinx/references.bib into doc/references.bib
File sphinx/references.bib was not used, and was messey. I merged it
into doc/references.bib. Also I fixed a collision between two duplicates
of Luding2008.
Still there are hundreds of undefined references during compilation like:
LaTeX Warning: Hyper reference `yade.utils:yade.utils.createInteraction'
on page 112 undefined on input line 6806.
but that seems unrelated.
removed:
doc/sphinx/references.bib
modified:
doc/references.bib
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=== modified file 'doc/references.bib'
--- doc/references.bib 2014-09-12 05:57:43 +0000
+++ doc/references.bib 2014-10-16 12:19:03 +0000
@@ -590,7 +590,7 @@
url = "http://www.refdoc.fr/Detailnotice?idarticle=7435486";
}
-@article{Luding2008,
+@article{Luding2008b,
year={2008},
issn={1434-5021},
journal={Granular Matter},
@@ -782,3 +782,36 @@
author = {J. M. DallaValle},
volume = {2nd edition}
}
+
+@phdthesis{ Scholtes2009,
+ author = " Luc Scholtès ",
+ title = " Modélisation micromécanique des milieux granulaires partiellement saturés ",
+ year = "2009",
+ school = "Institut National Polytechnique de Grenoble",
+ url = "http://tel.archives-ouvertes.fr/tel-00363961/en/";
+}
+
+@article{ Scholtes2009b,
+ author = "L. Scholtès and B. Chareyre and F. Nicot and F. Darve",
+ title = "Micromechanics of granular materials with capillary effects",
+ journal = "International Journal of Engineering Science",
+ volume = "47",
+ number = "1",
+ pages = "64--75",
+ year = "2009",
+ issn = "0020-7225",
+ doi = "10.1016/j.ijengsci.2008.07.002",
+ url = "http://www.sciencedirect.com/science/article/B6V32-4TDJGDJ-1/2/9878efa5e573197aff6ee14d5abb58a2";,
+}
+
+@article{ Jerier2009,
+ journal="Granular Matter",
+ title="A geometric algorithm based on tetrahedral meshes to generate a dense polydisperse sphere packing",
+ volume="11",
+ number="1",
+ pages="43--52",
+ year="2009",
+ author="Jean-François Jerier and Didier Imbault and Fréderic-Victor Donzé and Pierre Doremus",
+ doi="10.1007/s10035-008-0116-0",
+ url="http://www.springerlink.com/content/w0x307g110421035";
+}
=== removed file 'doc/sphinx/references.bib'
--- doc/sphinx/references.bib 2014-04-15 13:55:10 +0000
+++ doc/sphinx/references.bib 1970-01-01 00:00:00 +0000
@@ -1,330 +0,0 @@
-***************************
-
-This file contains publications references from docstrings (as [Author2008]_) of classes, in bibtex format.
-
-When adding new entries:
-
- 1. Keep entries in the form Author2008 (Author is the first author), Author2008b if repeated
-
- 2. Try to fill mandatory fields for given type of citations (http://en.wikipedia.org/wiki/Bibtex#Entry_Types)
-
- 3. Do not use \'{i} funny escapes for accents, put everything in straight utf-8
-
-Thanks.
-
-***************************
-
-@inproceedings{Alonso2004,
- title = {Micro-mechanical investigation of the granular ratcheting},
- author = {F. Alonso-Marroquín and R. García-Rojo and H. J. Herrmann},
- booktitle = {Cyclic Behaviour of Soils and Liquefaction Phenomena},
- publisher = {Taylor \& Francis},
- year = {2004},
- month = {april},
- isbn = {9058096203},
- pages = {3--10},
- editor = {T. Triantafyllidis},
- url = {http://www.comphys.ethz.ch/hans/p/334.pdf}
-}
-
-@book{Allen1989,
- author = {Allen, M. P. and Tildesley, D. J.},
- title = {Computer simulation of liquids},
- year = {1989},
- isbn = {0-19-855645-4},
- publisher = {Clarendon Press},
- address = {New York, NY, USA},
-}
-
-@article{Chareyre2005,
- author = {Bruno Chareyre and Pascal Villard},
- title = {Dynamic Spar Elements and Discrete Element Methods in Two Dimensions for the Modeling of Soil-Inclusion Problems},
- publisher = {ASCE},
- year = {2005},
- journal = {Journal of Engineering Mechanics},
- volume = {131},
- number = {7},
- pages = {689-698},
- url = {http://link.aip.org/link/?QEM/131/689/1},
- doi = {10.1061/(ASCE)0733-9399(2005)131:7(689)}
-}
-
-@phdthesis{Scholtes2009,
- author = { Luc Scholtès },
- title = { Modélisation micromécanique des milieux granulaires partiellement saturés },
- year = {2009},
- school = {Institut National Polytechnique de Grenoble},
- url = {http://tel.archives-ouvertes.fr/tel-00363961/en/}
-}
-
-@article{Scholtes2009b,
- author = "L. Scholtès and B. Chareyre and F. Nicot and F. Darve",
- title = "Micromechanics of granular materials with capillary effects",
- journal = "International Journal of Engineering Science",
- volume = "47",
- number = "1",
- pages = "64--75",
- year = "2009",
- issn = "0020-7225",
- doi = "10.1016/j.ijengsci.2008.07.002",
- url = "http://www.sciencedirect.com/science/article/B6V32-4TDJGDJ-1/2/9878efa5e573197aff6ee14d5abb58a2";,
-}
-
-@proceedings{DeghmReport2006,
- title={Annual Report 2006},
- year={2006},
- editor={F. V. Donzé},
- organization={Discrete Element Group for Hazard Mitigation},
- publisher={Université Joseph Fourier, Grenoble},
- url={ http://geo.hmg.inpg.fr/frederic/Discrete_Element_Group_FVD.html }
-}
-
-@article{Ivars2011,
-title = "The synthetic rock mass approach for jointed rock mass modelling ",
-journal = "International Journal of Rock Mechanics and Mining Sciences ",
-volume = "48",
-number = "2",
-pages = "219 - 244",
-year = "2011",
-doi = "10.1016/j.ijrmms.2010.11.014",
-author = "Diego Mas Ivars and Matthew E. Pierce and Caroline Darcel and Juan Reyes-Montes and David O. Potyondy and R. Paul Young and Peter A. Cundall"
-}
-
-@article{Jerier2009,
- journal={Granular Matter},
- title={A geometric algorithm based on tetrahedral meshes to generate a dense polydisperse sphere packing},
- volume={11},
- number={1},
- pages={43--52},
- year={2009},
- author={Jean-François Jerier and Didier Imbault and Fréderic-Victor Donzé and Pierre Doremus},
- doi={10.1007/s10035-008-0116-0},
- url={http://www.springerlink.com/content/w0x307g110421035}
-}
-
-@article{Pournin2001,
- title = {Molecular-dynamics force models for better control of energy dissipation in numerical simulations of dense granular media},
- author = {Pournin, L. and Liebling, Th. M. and Mocellin, A. },
- journal = {Phys. Rev. E},
- volume = {65},
- number = {1},
- pages = {011302},
- numpages = {7},
- year = {2001},
- month = {Dec},
- doi = {10.1103/PhysRevE.65.011302},
- publisher = {American Physical Society}
-}
-
-@article{Potyondy2004,
-title = "A bonded-particle model for rock ",
-journal = "International Journal of Rock Mechanics and Mining Sciences ",
-volume = "41",
-number = "8",
-pages = "1329 - 1364",
-year = "2004",
-doi = "10.1016/j.ijrmms.2004.09.011",
-author = "D.O. Potyondy and P.A. Cundall"
-}
-
-@article{Jung1997,
- author={Derek Jung and Kamal K. Gupta},
- title={Octree-based hierarchical distance maps for collision detection},
- journal={Journal of Robotic Systems},
- volume={14},
- number={11},
- pages={789--806},
- year={1997},
- doi={10.1002/(SICI)1097-4563(199711)14:11<789::AID-ROB3>3.0.CO;2-Q},
-}
-
-@article{Hubbard1996,
- author = {Hubbard, Philip M.},
- title = {Approximating polyhedra with spheres for time-critical collision detection},
- journal = {ACM Trans. Graph.},
- volume = {15},
- number = {3},
- year = {1996},
- issn = {0730-0301},
- pages = {179--210},
- doi = {http://doi.acm.org/10.1145/231731.231732},
- publisher = {ACM},
- address = {New York, NY, USA},
-}
-
-@article{Klosowski1998,
- author = {James T. Klosowski and Martin Held and Joseph S. B. Mitchell and Henry Sowizral and Karel Zikan},
- title = {Efficient Collision Detection Using Bounding Volume Hierarchies of k-DOPs},
- journal = {IEEE Transactions on Visualization and Computer Graphics},
- year = {1998},
- volume = {4},
- pages = {21--36},
- url={http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.105.6555&rep=rep1&type=pdf}
-}
-
-@article{Munjiza2006,
- Author = { A. Munjiza and E. Rougier and N. W. M. John},
- Title= {\uppercase{MR} linear contact detection algorithm},
- journal = {International Journal for Numerical Methods in Engineering},
- volume = {66},
- number = {1},
- pages={46--71},
- year={2006},
- publisher={John Wiley \& Sons, Ltd.},
- doi={10.1002/nme.1538},
- abstract={Large-scale discrete element simulations, as well as a whole range of related problems, involve contact of a large number of separate bodies and an efficient and robust contact detection algorithm is necessary. There has been a number of contact detection algorithms with total detection time proportional to N ln(N) (where N is the total number of separate bodies) reported in the past. In more recent years algorithms with total CPU time proportional to N have been developed. In this work, a novel contact detection algorithm with total detection time proportional to N is proposed. The performance of the algorithm is not influenced by packing density, while memory requirements are insignificant. The algorithm is applicable to systems comprising bodies of a similar size. The algorithm is named MR (Munjiza-Rougier: Munjiza devised the algorithm, Rougier implemented it). In the second part of the paper the algorithm is extended to particles of different sizes. The new algorithm is called MMR (multi-step MR) algorithm.}
-}
-
-@article{Munjiza1998,
- Author ={ A. Munjiza and K. R. F. Andrews},
- Title = {\uppercase{NBS} contact detection algorithm for bodies of similar size},
- journal = {International Journal for Numerical Methods in Engineering},
- volume= {43},
- number={1},
- pages={131--149},
- year={1998},
- publisher={John Wiley \& Sons, Ltd.},
- doi={10.1002/(SICI)1097-0207(19980915)43:1<131::AID-NME447>3.0.CO;2-S},
- abstract={Large-scale discrete element simulations, as well as a whole range of related problems, involve contact of a large number of separate bodies. In this context an efficient and robust contact detection algorithm is necessary. There has been a number of contact detection algorithms with total detection time (CPU time needed to detect all couples close to each other) proportional to Nln(N) (where N is the total number of separate bodies) reported in recent years. In this work a contact detection algorithm with total detection time proportional to N is reported. The algorithm is termed NBS, which stands for no binary search. In other words, the proposed algorithm involves no binary search at any stage. In addition the performance of the algorithm in terms of total detection time is not influenced by packing density, while memory requirements are insignificant. The only limitation of the algorithm is its applicability to the systems comprising bodies of similar size.}
-}
-
-@Article{Verlet1967,
- title = {Computer ``Experiments'' on Classical Fluids. I. Thermodynamical Properties of Lennard-Jones Molecules},
- author = {Verlet, Loup },
- journal = {Phys. Rev.},
- volume = {159},
- number = {1},
- pages = {98},
- year = {1967},
- month = {Jul},
- doi = {10.1103/PhysRev.159.98},
- publisher = {American Physical Society}
-}
-
-@inproceedings{Luding2008,
- author={Stefan Luding},
- title={Introduction to discrete element methods},
- booktitle={European Journal of Environmental and Civil Engineering},
- publisher={Lavoisier},
- year={2008},
- isbn={978-2-7462-2258-8},
- pages={785--826},
- editor={F\'elix Darve and Jean-Pierre Ollivier},
-}
-
-@article{Wang2009,
- title = {A new algorithm to model the dynamics of 3-D bonded rigid bodies with rotations},
- author = {Yucang Wang},
- journal = {Acta Geotechnica},
- publisher = {Springer Berlin / Heidelberg},
- issn = {1861-1125 (Print) 1861-1133 (Online)},
- url = {http://www.springerlink.com/content/l2306412v1004871/},
- abstract = {In this paper we propose a new algorithm to simulate the dynamics of 3-D interacting rigid bodies. Six degrees of freedom are introduced to describe a single 3-D body or particle, and six relative motions and interactions are permitted between bonded bodies. We develop a new decomposition technique for 3-D rotation and pay particular attention to the fact that an arbitrary relative rotation between two coordinate systems or two rigid bodies can not be decomposed into three mutually independent rotations around three orthogonal axes. However, it can be decomposed into two rotations, one pure axial rotation around the line between the centers of two bodies, and another rotation on a specified plane controlled by another parameter. These two rotations, corresponding to the relative axial twisting and bending in our model, are sequence-independent. Therefore all interactions due to the relative translational and rotational motions between linked bodies can be uniquely determined using such a two-step decomposition technique. A complete algorithm for one such simulation is presented. Compared with existing methods, this algorithm is physically more reliable and has greater numerical accuracy.},
- number = {2},
- pages = {117--127},
- volume = {4},
- doi = {10.1007/s11440-008-0072-1},
- year = {2009},
- keywords = {Bonded rigid-bodies - Decomposition of 3-D finite rotations - Quaternion},
- month = {July},
-}
-
-@article{Omelyan1999,
- title={A New Leapfrog Integrator of Rotational Motion. The Revised Angular-Momentum Approach},
- author={Igor P. Omelyan},
- journal={Molecular Simulation},
- volume={22},
- number={3},
- year={1999},
- doi={10.1080/08927029908022097},
- url={http://arxiv.org/pdf/physics/9901025}
-}
-
-@article{Neto2006,
- author = "Natale Neto and Luca Bellucci",
- title = "A new algorithm for rigid body molecular dynamics",
- journal = "Chemical Physics",
- volume = "328",
- number = "1--3",
- pages = "259--268",
- year = "2006",
- issn = "0301-0104",
- doi = "10.1016/j.chemphys.2006.07.009",
-}
-
-@article{Johnson2008,
- author={Scott M. Johnson and John R. Williams and Benjamin K. Cook},
- title={Quaternion-based rigid body rotation integration algorithms for use in particle methods},
- journal={International Journal for Numerical Methods in Engineering},
- volume={74},
- number={8},
- pages={1303--1313},
- year={2008},
- doi={10.1002/nme.2210},
-}
-
-@inproceedings{Addetta2001,
- author = {{D'Addetta}, G.~A. and {Kun}, F. and {Ramm}, E. and {Herrmann}, H.~J.},
- title = "{From solids to granulates - Discrete element simulations of fracture and fragmentation processes in geomaterials.}",
- booktitle = {Continuous and Discontinuous Modelling of Cohesive-Frictional Materials},
- year = 2001,
- series = {Lecture Notes in Physics, Berlin Springer Verlag},
- volume = 568,
- editor = "{P.~A.~Vermeer, S.~Diebels, W.~Ehlers, H.~J.~Herrmann, S.~Luding, \& E.~Ramm}",
- pages = {231-+},
- url={http://www.comphys.ethz.ch/hans/p/267.pdf}
-}
-
-@book{Pfc3dManual30,
- author={ICG},
- title={PFC3D (Particle Flow Code in 3D) Theory and Background Manual, version 3.0},
- publisher={Itasca Consulting Group},
- year={2003}
-}
-
-@phdthesis{Hentz2003,
- Author = {Hentz, Séebastien},
- Title = {Modélisation d'une Structure en Béton Armé Soumise à un Choc par la méthode des Eléments Discrets},
- School = {Université Grenoble 1 -- Joseph Fourier},
- Year = {2003},
- Month = {October},
-}
-
-@inproceedings{Price2007,
- Author = { Mathew Price and Vasile Murariu and Garry Morrison},
- title= {Sphere clump generation and trajectory comparison for real particles},
- booktitle = {Proceedings of Discrete Element Modelling 2007},
- year = {2007},
- url={http://www.cogency.co.za/images/info/dem2007_sphereclump.pdf},
-}
-
-@inproceedings{Kuhl2001,
- title = {Microplane modelling and particle modelling of cohesive-frictional materials},
- author = {E. Kuhl and G. A. D'Addetta and M. Leukart and E. Ramm},
- booktitle = {Continuous and Discontinuous Modelling of Cohesive-Frictional Materials},
- publisher = {Springer Berlin / Heidelberg},
- issn = {1616-6361},
- isbn = {978-3-540-41525-1},
- url = {http://www.springerlink.com/content/e50544266r506615},
- abstract = {This paper aims at comparing the microplane model as a particular representative of the class of continuous material models with a discrete particle model which is of discontinuous nature. Thereby, the constitutive equations of both approaches will be based onVoigtshypothesis defining the strain state on the individual microplanes as well as the relative particle displacements. Through an appropriate constitutive assumption, the microplane stresses and the contact forces can be determined. In both cases, the equivalence of microscopic and macroscopic virtual work yields the overall stress strain relation. An elastic and an elasto-plastic material characterization of the microplane model and the particle model are derived and similarities of both approaches are illustrated.},
- volume = {568},
- series = {Lecture Notes in Physics},
- year = {2001},
- pages = {31--46},
- doi = {10.1007/3-540-44424-6_3},
-}
-
-@article{Zhou1999536,
- title = "Rolling friction in the dynamic simulation of sandpile formation ",
- journal = "Physica A: Statistical Mechanics and its Applications ",
- volume = "269",
- number = "2–4",
- pages = "536 - 553",
- year = "1999",
- note = "",
- issn = "0378-4371",
- doi = "10.1016/S0378-4371(99)00183-1",
- url = "http://www.sciencedirect.com/science/article/pii/S0378437199001831";,
- author = "Y.C. Zhou and B.D. Wright and R.Y. Yang and B.H. Xu and A.B. Yu",
-}
-
