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Message #11561
[Branch ~yade-pkg/yade/git-trunk] Rev 3500: Added examples for Ig2_Sphere_Polyhedra_ScGeom, added ymport.ele function
------------------------------------------------------------
revno: 3500
committer: Jan Stransky <jan.stransky@xxxxxxxxxxx>
timestamp: Wed 2014-10-22 12:13:18 +0200
message:
Added examples for Ig2_Sphere_Polyhedra_ScGeom, added ymport.ele function
added:
examples/polyhedra/clump.py
examples/polyhedra/horse.coarse.gts
examples/polyhedra/horse.ele
examples/polyhedra/horse.node
examples/polyhedra/horse.py
examples/polyhedra/sphere-interaction.py
modified:
py/ymport.py
--
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=== added file 'examples/polyhedra/clump.py'
--- examples/polyhedra/clump.py 1970-01-01 00:00:00 +0000
+++ examples/polyhedra/clump.py 2014-10-22 10:13:18 +0000
@@ -0,0 +1,49 @@
+
+def clumpPolyhedra(polyhedra):
+ clumpId,junk = O.bodies.appendClumped(polyhedra)
+ return
+ clump = O.bodies[clumpId]
+ clump.state.pos = sum((t.state.pos*t.state.mass for t in polyhedra),Vector3.Zero)/sum(t.state.mass for t in polyhedra)
+ print clump.state.pos
+ clump.state.mass = sum(t.state.mass for t in polyhedra)
+ clump.state.inertia = sum((t.state.inertia for t in polyhedra),Vector3.Zero)
+
+m = PolyhedraMat()
+m.density = 2600 #kg/m^3
+m.Ks = 20000
+m.Kn = 1E6 #Pa
+m.frictionAngle = 0.6 #rad
+O.materials.append(m)
+
+t1 = polyhedron(((0,0,0),(0,0,1),(0,1,0),(0,1,1),(1,0,0),(1,0,1),(1,1,0),(1,1,1)))
+t2 = polyhedron(((0,0,1),(0,0,2),(0,1,1),(0,1,2),(2,0,1),(2,0,2),(2,1,1),(2,1,2)))
+
+t1.state.mass = 1e-12
+t1.state.inertia = (1e-12,1e-12,1e-12)
+t1.state.pos = (0,.5,0)
+
+t2.state.ori = ((1,2,3),1)
+t2.state.pos = (sqrt(2),.5,-sqrt(2))
+
+clumpPolyhedra((t1,t2))
+
+
+O.engines=[
+ ForceResetter(),
+ InsertionSortCollider([Bo1_Polyhedra_Aabb(),Bo1_Wall_Aabb(),Bo1_Facet_Aabb()]),
+ InteractionLoop(
+ [Ig2_Polyhedra_Polyhedra_PolyhedraGeom()],
+ [Ip2_PolyhedraMat_PolyhedraMat_PolyhedraPhys()],
+ [Law2_PolyhedraGeom_PolyhedraPhys_Volumetric()]
+ ),
+ NewtonIntegrator()
+]
+
+O.dt=0.00025
+#O.step()
+
+try:
+ from yade import qt
+ qt.View()
+except:
+ pass
=== added file 'examples/polyhedra/horse.coarse.gts'
--- examples/polyhedra/horse.coarse.gts 1970-01-01 00:00:00 +0000
+++ examples/polyhedra/horse.coarse.gts 2014-10-22 10:13:18 +0000
@@ -0,0 +1,2007 @@
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=== added file 'examples/polyhedra/horse.ele'
--- examples/polyhedra/horse.ele 1970-01-01 00:00:00 +0000
+++ examples/polyhedra/horse.ele 2014-10-22 10:13:18 +0000
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=== added file 'examples/polyhedra/horse.node'
--- examples/polyhedra/horse.node 1970-01-01 00:00:00 +0000
+++ examples/polyhedra/horse.node 2014-10-22 10:13:18 +0000
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=== added file 'examples/polyhedra/horse.py'
--- examples/polyhedra/horse.py 1970-01-01 00:00:00 +0000
+++ examples/polyhedra/horse.py 2014-10-22 10:13:18 +0000
@@ -0,0 +1,36 @@
+# modified script yade/examples/gts-horse/horse.py
+from yade import pack,ymport
+import gts
+
+surf=gts.read(open('horse.coarse.gts'))
+pred=pack.inGtsSurface(surf)
+aabb=pred.aabb()
+dim0=aabb[1][0]-aabb[0][0]; radius=dim0/40.
+O.bodies.append(pack.regularHexa(pred,radius=radius,gap=radius/4.))
+
+tetras = ymport.ele('horse.node','horse.ele',shift=(0,0,-1*(aabb[1][2]-aabb[0][2])),wire=False,color=(0,1,1),fixed=True)
+O.bodies.append(tetras)
+
+O.engines=[
+ ForceResetter(),
+ InsertionSortCollider([Bo1_Sphere_Aabb(),Bo1_Polyhedra_Aabb()]),
+ InteractionLoop(
+ [Ig2_Sphere_Sphere_ScGeom(),Ig2_Sphere_Polyhedra_ScGeom(edgeCoeff=.1,vertexCoeff=.05)],
+ [Ip2_FrictMat_FrictMat_FrictPhys()],
+ [Law2_ScGeom_FrictPhys_CundallStrack()],
+ ),
+ NewtonIntegrator(damping=.1,gravity=(0,0,-5000)),
+ PyRunner(iterPeriod=10,command='addPlotData()')
+]
+
+O.dt=.4*PWaveTimeStep()
+O.saveTmp()
+O.timingEnabled=True
+O.trackEnergy=True
+from yade import plot
+plot.plots={'i':('total',O.energy.keys,)}
+def addPlotData(): plot.addData(i=O.iter,total=O.energy.total(),**O.energy)
+plot.plot(subPlots=False)
+
+from yade import qt
+qt.View()
=== added file 'examples/polyhedra/sphere-interaction.py'
--- examples/polyhedra/sphere-interaction.py 1970-01-01 00:00:00 +0000
+++ examples/polyhedra/sphere-interaction.py 2014-10-22 10:13:18 +0000
@@ -0,0 +1,40 @@
+from yade import polyhedra_utils
+import random
+
+polyMat = PolyhedraMat(young=1e10,poisson=.05)
+frictMat = FrictMat(young=1e9,poisson=.2)
+
+O.materials.append((polyMat,frictMat))
+
+poly = polyhedra_utils.polyhedra(polyMat,(1,2,3)); poly.wire=False
+sph1 = sphere((2,2,2),.5,material=frictMat)
+sph2 = sphere((-2,0,0),.5,material=frictMat)
+sph3 = sphere((0,-2,0),.5,material=frictMat)
+O.bodies.append((
+ poly,
+ sph1,
+ sph2,
+ sph3
+))
+
+O.engines=[
+ ForceResetter(),
+ InsertionSortCollider([Bo1_Polyhedra_Aabb(),Bo1_Sphere_Aabb()]),
+ InteractionLoop(
+ [Ig2_Sphere_Polyhedra_ScGeom()],
+ [Ip2_FrictMat_PolyhedraMat_FrictPhys()],
+ [Law2_ScGeom_FrictPhys_CundallStrack()],
+ ),
+ NewtonIntegrator(),
+]
+
+O.dt = 1e-7
+O.step()
+
+poly.state.blockedDOFs = 'xyzXYZ'
+for s in (sph1,sph2,sph3):
+ r=random.random
+ s.state.vel = -10*(s.state.pos+Vector3(r(),r(),r()))
+
+from yade import qt
+qt.View()
=== modified file 'py/ymport.py'
--- py/ymport.py 2014-06-25 12:54:16 +0000
+++ py/ymport.py 2014-10-22 10:13:18 +0000
@@ -396,3 +396,48 @@
if returnConnectivityTable:
return facets, nodes, elems
return facets
+
+def ele(nodeFileName,eleFileName,shift=(0,0,0),scale=1.0,**kw):
+ """ Import tetrahedral mesh from .ele file, return list of created tetrahedrons.
+
+ :param string nodeFileName: name of .node file
+ :param string eleFileName: name of .ele file
+ :param (float,float,float)|Vector3 shift: (X,Y,Z) parameter moves the specimen.
+ :param float scale: factor scales the given data.
+ :param \*\*kw: (unused keyword arguments) is passed to :yref:`yade.utils.polyhedron`
+ """
+ f = open(nodeFileName)
+ line = f.readline()
+ while line.startswith('#'):
+ line = f.readline()
+ ls = line.split()
+ nVertices = int(ls[0])
+ if int(ls[1])!=3:
+ raise RuntimeError, "wrong .node file, number of dimensions should be 3"
+ vertices = [None for i in xrange(nVertices)]
+ shift = Vector3(shift)
+ for i in xrange(nVertices):
+ line = f.readline()
+ while line.startswith('#'):
+ line = f.readline()
+ ls = line.split()
+ if not ls:
+ continue
+ v = shift + scale*Vector3(tuple(float(ls[j]) for j in (1,2,3)))
+ vertices[int(ls[0])-1] = v
+ f.close()
+ #
+ f = open(eleFileName)
+ line = f.readline()
+ while line.startswith('#'):
+ line = f.readline()
+ ls = line.split()
+ if int(ls[1])!=4:
+ raise RuntimeError, "wrong .ele file, unsupported tetrahedra's number of nodes"
+ nTetras = int(ls[0])
+ tetras = [None for i in xrange(nTetras)]
+ for i in xrange(nTetras):
+ ls = f.readline().split()
+ tetras[int(ls[0])-1] = utils.polyhedron([vertices[int(ls[j])-1] for j in (1,2,3,4)],**kw)
+ f.close()
+ return tetras
