yade-users team mailing list archive

Thread
Date
[Question #151388]: installation problem

To: yade-users@xxxxxxxxxxxxxxxxxxx
From: Ram Chand <question151388@xxxxxxxxxxxxxxxxxxxxx>
Date: Sat, 02 Apr 2011 10:30:56 -0000
Reply-to: question151388@xxxxxxxxxxxxxxxxxxxxx
Sender: bounces@xxxxxxxxxxxxx
New question #151388 on Yade:
https://answers.launchpad.net/yade/+question/151388

Hi,
I am using Fedora 13. I have installed YADE with following info in terminal. But how to run YADE? Is it final installation?


[ram@localhost yade]$ scons PREFIX=/home/username/YADE
scons: Reading SConscript files ...
@@@ Using profile default (scons.profile-default) @@@
Yade version is `unknown' (unknown), installed files will be suffixed with `-unknown'.
All intermediary files will be in `/home/ram/Desktop/tmp/build-unknown'.
Mkdir("/home/ram/Desktop/tmp/build-unknown")
Checking whether c++ compiler "g++" works...yes
Finding libstdc++ library... (cached) /usr/lib/libstdc++.so.6
Checking for pthread_exit(NULL) in C library pthread... yes
Checking for Python development files... ok
Checking for C++ header file numpy/ndarrayobject.h... yes
Checking for required python modules... (cached) all ok
Checking boost libraries... all ok
Checking for C++ header file boost/foreach.hpp... yes
Checking for C++ header file Eigen/Core... yes
Checking for C++ header file loki/NullType.h... yes
Checking for glutGetModifiers() in C++ library glut... yes
Checking for QGLViewer() in C++ library qglviewer-qt4... no
Checking for QGLViewer() in C++ library libQGLViewer... yes
Checking for vtkInstantiator::New() in C++ library vtkCommon... yes
Checking for gts_object_class() in C++ library gts... yes
Checking for log4cxx::Logger::getLogger("") in C++ library log4cxx... yes
Rebuilding combined files, since the md5 has changed.
scons: done reading SConscript files.
scons: Building targets ...
scons: *** [/home/username] /home/username: Permission denied
scons: building terminated because of errors.
[ram@localhost yade]$ scons PREFIX=/home/ram/YADE
scons: Reading SConscript files ...
@@@ Using profile default (scons.profile-default) @@@
Yade version is `unknown' (unknown), installed files will be suffixed with `-unknown'.
All intermediary files will be in `/home/ram/Desktop/tmp/build-unknown'.
Checking whether c++ compiler "g++" works...(cached) yes
Finding libstdc++ library... (cached) /usr/lib/libstdc++.so.6
Checking for pthread_exit(NULL) in C library pthread... (cached) yes
Checking for Python development files... (cached) ok
Checking for C++ header file numpy/ndarrayobject.h... (cached) yes
Checking for required python modules... (cached) all ok
Checking boost libraries... (cached) all ok
Checking for C++ header file boost/foreach.hpp... (cached) yes
Checking for C++ header file Eigen/Core... (cached) yes
Checking for C++ header file loki/NullType.h... (cached) yes
Checking for glutGetModifiers() in C++ library glut... (cached) yes
Checking for QGLViewer() in C++ library qglviewer-qt4... (cached) no
Checking for QGLViewer() in C++ library libQGLViewer... (cached) yes
Checking for vtkInstantiator::New() in C++ library vtkCommon... (cached) yes
Checking for gts_object_class() in C++ library gts... (cached) yes
Checking for log4cxx::Logger::getLogger("") in C++ library log4cxx... (cached) yes
scons: done reading SConscript files.
scons: Building targets ...
> /home/ram/YADE/bin/yade-unknown
Chmod("/home/ram/YADE/bin/yade-unknown", 0755)
> /home/ram/YADE/bin/yade-unknown-batch
Chmod("/home/ram/YADE/bin/yade-unknown-batch", 0755)
C py/3rd-party/pygts-0.3.1/cleanup.c
C py/3rd-party/pygts-0.3.1/edge.c
In file included from /usr/include/python2.6/pyconfig.h:4,
                 from /usr/include/python2.6/Python.h:8,
                 from py/3rd-party/pygts-0.3.1/pygts.h:39,
                 from py/3rd-party/pygts-0.3.1/cleanup.c:36:
/usr/include/python2.6/pyconfig-32.h:1070:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdlib.h:25,
                 from py/3rd-party/pygts-0.3.1/pygts.h:35,
                 from py/3rd-party/pygts-0.3.1/cleanup.c:36:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
In file included from /usr/include/python2.6/pyconfig.h:4,
                 from /usr/include/python2.6/Python.h:8,
                 from py/3rd-party/pygts-0.3.1/pygts.h:39,
                 from py/3rd-party/pygts-0.3.1/edge.c:28:
/usr/include/python2.6/pyconfig-32.h:1070:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdlib.h:25,
                 from py/3rd-party/pygts-0.3.1/pygts.h:35,
                 from py/3rd-party/pygts-0.3.1/edge.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
C py/3rd-party/pygts-0.3.1/face.c
C py/3rd-party/pygts-0.3.1/object.c
In file included from /usr/include/python2.6/pyconfig.h:4,
                 from /usr/include/python2.6/Python.h:8,
                 from py/3rd-party/pygts-0.3.1/pygts.h:39,
                 from py/3rd-party/pygts-0.3.1/face.c:28:
/usr/include/python2.6/pyconfig-32.h:1070:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdlib.h:25,
                 from py/3rd-party/pygts-0.3.1/pygts.h:35,
                 from py/3rd-party/pygts-0.3.1/face.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
In file included from /usr/include/python2.6/pyconfig.h:4,
                 from /usr/include/python2.6/Python.h:8,
                 from py/3rd-party/pygts-0.3.1/pygts.h:39,
                 from py/3rd-party/pygts-0.3.1/object.c:28:
/usr/include/python2.6/pyconfig-32.h:1070:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdlib.h:25,
                 from py/3rd-party/pygts-0.3.1/pygts.h:35,
                 from py/3rd-party/pygts-0.3.1/object.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
C py/3rd-party/pygts-0.3.1/point.c
C py/3rd-party/pygts-0.3.1/vertex.c
In file included from /usr/include/python2.6/pyconfig.h:4,
                 from /usr/include/python2.6/Python.h:8,
                 from py/3rd-party/pygts-0.3.1/pygts.h:39,
                 from py/3rd-party/pygts-0.3.1/point.c:28:
/usr/include/python2.6/pyconfig-32.h:1070:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdlib.h:25,
                 from py/3rd-party/pygts-0.3.1/pygts.h:35,
                 from py/3rd-party/pygts-0.3.1/point.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
In file included from /usr/include/python2.6/pyconfig.h:4,
                 from /usr/include/python2.6/Python.h:8,
                 from py/3rd-party/pygts-0.3.1/pygts.h:39,
                 from py/3rd-party/pygts-0.3.1/vertex.c:28:
/usr/include/python2.6/pyconfig-32.h:1070:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdlib.h:25,
                 from py/3rd-party/pygts-0.3.1/pygts.h:35,
                 from py/3rd-party/pygts-0.3.1/vertex.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
C py/3rd-party/pygts-0.3.1/pygts.c
C py/3rd-party/pygts-0.3.1/segment.c
In file included from /usr/include/python2.6/pyconfig.h:4,
                 from /usr/include/python2.6/Python.h:8,
                 from py/3rd-party/pygts-0.3.1/pygts.h:39,
                 from py/3rd-party/pygts-0.3.1/pygts.c:28:
/usr/include/python2.6/pyconfig-32.h:1070:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdlib.h:25,
                 from py/3rd-party/pygts-0.3.1/pygts.h:35,
                 from py/3rd-party/pygts-0.3.1/pygts.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
In file included from /usr/include/python2.6/pyconfig.h:4,
                 from /usr/include/python2.6/Python.h:8,
                 from py/3rd-party/pygts-0.3.1/pygts.h:39,
                 from py/3rd-party/pygts-0.3.1/segment.c:28:
/usr/include/python2.6/pyconfig-32.h:1070:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdlib.h:25,
                 from py/3rd-party/pygts-0.3.1/pygts.h:35,
                 from py/3rd-party/pygts-0.3.1/segment.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
C py/3rd-party/pygts-0.3.1/surface.c
In file included from /usr/include/python2.6/pyconfig.h:4,
                 from /usr/include/python2.6/Python.h:8,
                 from py/3rd-party/pygts-0.3.1/pygts.h:39,
                 from py/3rd-party/pygts-0.3.1/surface.c:28:
/usr/include/python2.6/pyconfig-32.h:1070:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdlib.h:25,
                 from py/3rd-party/pygts-0.3.1/pygts.h:35,
                 from py/3rd-party/pygts-0.3.1/surface.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
C py/3rd-party/pygts-0.3.1/triangle.c
In file included from /usr/include/python2.6/pyconfig.h:4,
                 from /usr/include/python2.6/Python.h:8,
                 from py/3rd-party/pygts-0.3.1/pygts.h:39,
                 from py/3rd-party/pygts-0.3.1/triangle.c:28:
/usr/include/python2.6/pyconfig-32.h:1070:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdlib.h:25,
                 from py/3rd-party/pygts-0.3.1/pygts.h:35,
                 from py/3rd-party/pygts-0.3.1/triangle.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
> /home/ram/Desktop/tmp/build-unknown/lib/yade-support.cpp
> /home/ram/Desktop/tmp/build-unknown/core/core.cpp
C /home/ram/Desktop/tmp/build-unknown/lib/yade-support.cpp
C /home/ram/Desktop/tmp/build-unknown/core/core.cpp
In file included from /usr/include/boost/python/object/function_handle.hpp:10,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:19,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:12,
                 from /usr/include/boost/python/args.hpp:25,
                 from /usr/include/boost/python.hpp:11,
                 from /home/ram/Desktop/tmp/yade/lib/serialization/Serializable.hpp:23,
                 from /home/ram/Desktop/tmp/yade/lib/serialization/Serializable.cpp:11,
                 from /home/ram/Desktop/tmp/build-unknown/lib/yade-support.cpp:5:
/home/ram/Desktop/tmp/yade/lib/serialization/Serializable.hpp: In member function 'PyObject* boost::python::objects::caller_py_function_impl<Caller>::operator()(PyObject*, PyObject*) [with Caller = boost::python::detail::caller<PyObject* (*)(Serializable&, const Serializable&), boost::python::default_call_policies, boost::mpl::vector3<PyObject*, Serializable&, const Serializable&> >]':
/home/ram/Desktop/tmp/yade/lib/serialization/Serializable.hpp:262: warning: dereferencing pointer 'p.2715' does break strict-aliasing rules
/usr/include/boost/python/detail/destroy.hpp:90: note: initialized from here
/home/ram/Desktop/tmp/build-unknown/include/yade/lib/factory/Factorable.hpp:63: warning: dereferencing pointer 'this.701' does break strict-aliasing rules
/home/ram/Desktop/tmp/yade/lib/serialization/Serializable.hpp:262: note: initialized from here
/home/ram/Desktop/tmp/yade/lib/serialization/Serializable.hpp:262: warning: dereferencing pointer 'p.2715' does break strict-aliasing rules
/usr/include/boost/python/detail/destroy.hpp:90: note: initialized from here
/home/ram/Desktop/tmp/build-unknown/include/yade/lib/factory/Factorable.hpp:63: warning: dereferencing pointer 'this.701' does break strict-aliasing rules
/home/ram/Desktop/tmp/yade/lib/serialization/Serializable.hpp:262: note: initialized from here
L libyade-support.so
> /home/ram/YADE/lib/yade-unknown/lib/libyade-support.so
L _gts.so
> /home/ram/YADE/lib/yade-unknown/py/gts/_gts.so
ln -s -f ../py/gts/_gts.so /home/ram/YADE/lib/yade-unknown/lib/lib_gts__python-module.so
> /home/ram/Desktop/tmp/build-unknown/plugins9.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins9.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins0.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins0.cpp
L libcore.so
> /home/ram/YADE/lib/yade-unknown/lib/libcore.so
> /home/ram/Desktop/tmp/build-unknown/plugins1.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins1.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins2.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins2.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins8.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins8.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins3.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins3.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins4.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins4.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins5.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins5.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins6.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins6.cpp
In file included from /usr/lib/gcc/i686-redhat-linux/4.4.5/../../../../include/c++/4.4.5/backward/strstream:47,
                 from /usr/include/vtk/vtkIOStream.h:112,
                 from /usr/include/vtk/vtkSystemIncludes.h:40,
                 from /usr/include/vtk/vtkIndent.h:24,
                 from /usr/include/vtk/vtkObjectBase.h:43,
                 from /usr/include/vtk/vtkObject.h:41,
                 from /usr/include/vtk/vtkCellArray.h:35,
                 from /home/ram/Desktop/tmp/yade/pkg/dem/VTKRecorder.cpp:7,
                 from /home/ram/Desktop/tmp/build-unknown/plugins6.cpp:3:
/usr/lib/gcc/i686-redhat-linux/4.4.5/../../../../include/c++/4.4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
> /home/ram/Desktop/tmp/build-unknown/plugins7.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins7.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins10.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins10.cpp
In file included from /home/ram/Desktop/tmp/build-unknown/plugins10.cpp:1:
/home/ram/Desktop/tmp/yade/pkg/dem/DomainLimiter.cpp: In member function 'virtual void LawTester::action()':
/home/ram/Desktop/tmp/yade/pkg/dem/DomainLimiter.cpp:218: warning: comparison between signed and unsigned integer expressions
> /home/ram/Desktop/tmp/build-unknown/plugins11.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins11.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins12.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins12.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins13.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins13.cpp
> /home/ram/Desktop/tmp/build-unknown/plugins14.cpp
C /home/ram/Desktop/tmp/build-unknown/plugins14.cpp
In file included from /usr/include/boost/python/object/function_handle.hpp:10,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:19,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:12,
                 from /usr/include/boost/python/args.hpp:25,
                 from /usr/include/boost/python.hpp:11,
                 from /home/ram/Desktop/tmp/build-unknown/include/yade/lib/serialization/Serializable.hpp:23,
                 from /home/ram/Desktop/tmp/build-unknown/include/yade/lib/multimethods/FunctorWrapper.hpp:12,
                 from /home/ram/Desktop/tmp/build-unknown/include/yade/pkg/common/GLDrawFunctors.hpp:6,
                 from /home/ram/Desktop/tmp/build-unknown/include/yade/pkg/common/Gl1_Facet.hpp:11,
                 from /home/ram/Desktop/tmp/yade/pkg/common/Gl1_Facet.cpp:11,
                 from /home/ram/Desktop/tmp/build-unknown/plugins13.cpp:1:
/home/ram/Desktop/tmp/build-unknown/include/yade/lib/base/openmp-accu.hpp: In member function 'PyObject* boost::python::objects::caller_py_function_impl<Caller>::operator()(PyObject*, PyObject*) [with Caller = boost::python::detail::caller<boost::python::detail::member<OpenMPAccumulator<double>, Law2_ScGeom_MindlinPhys_Mindlin>, 
-
-
-
--
-
-
L log.so
> /home/ram/YADE/lib/yade-unknown/py/yade/log.so
> /home/ram/YADE/lib/yade-unknown/py/yade/manpage.py
> /home/ram/YADE/lib/yade-unknown/py/yade/pack.py
> /home/ram/YADE/lib/yade-unknown/py/yade/params.py
> /home/ram/YADE/lib/yade-unknown/py/yade/plot.py
> /home/ram/YADE/lib/yade-unknown/py/yade/post2d.py
> /home/ram/YADE/lib/yade-unknown/py/yade/qt/Inspector.py
> /home/ram/YADE/lib/yade-unknown/py/yade/qt/SerializableEditor.py
C gui/qt4/_GLViewer.cpp
L _utils.so
> /home/ram/YADE/lib/yade-unknown/py/yade/_utils.so
C gui/qt4/OpenGLManager.cpp
C gui/qt4/GLViewer.cpp
moc-qt4 -DQT_GUI_LIB -DQT_CORE_LIB -DQT_XML_LIB -DQT_OPENGL_LIB -DQT_SHARED -DPYGTS_HAS_NUMPY -DYADE_GTS -DYADE_LOG4CXX -DYADE_OPENGL -DYADE_OPENMP -DYADE_QT4 -DYADE_VTK -DYADE_OPENMP -DYADE_CAST=static_cast -DYADE_PTR_CAST=static_pointer_cast -DNDEBUG -I/usr/include/vtk-5.0 -I/usr/include/vtk-5.2 -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/eigen2 -I/usr/include/vtk -I/home/ram/Desktop/tmp/build-unknown/include -Iinclude -I/usr/include/python2.6 -I/usr/include/QtGui -I/usr/include/QtCore -I/usr/include/QtXml -I/usr/include/QtOpenGL -o /home/ram/Desktop/tmp/build-unknown/gui/qt4/moc_GLViewer.cc gui/qt4/GLViewer.hpp
C /home/ram/Desktop/tmp/build-unknown/gui/qt4/moc_GLViewer.cc
moc-qt4 -DQT_GUI_LIB -DQT_CORE_LIB -DQT_XML_LIB -DQT_OPENGL_LIB -DQT_SHARED -DPYGTS_HAS_NUMPY -DYADE_GTS -DYADE_LOG4CXX -DYADE_OPENGL -DYADE_OPENMP -DYADE_QT4 -DYADE_VTK -DYADE_OPENMP -DYADE_CAST=static_cast -DYADE_PTR_CAST=static_pointer_cast -DNDEBUG -I/usr/include/vtk-5.0 -I/usr/include/vtk-5.2 -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/eigen2 -I/usr/include/vtk -I/home/ram/Desktop/tmp/build-unknown/include -Iinclude -I/usr/include/python2.6 -I/usr/include/QtGui -I/usr/include/QtCore -I/usr/include/QtXml -I/usr/include/QtOpenGL -o /home/ram/Desktop/tmp/build-unknown/gui/qt4/moc_OpenGLManager.cc gui/qt4/OpenGLManager.hpp
C /home/ram/Desktop/tmp/build-unknown/gui/qt4/moc_OpenGLManager.cc
> /home/ram/YADE/lib/yade-unknown/py/yade/qt/__init__.py
pyrcc4 -o /home/ram/Desktop/tmp/build-unknown/gui/qt4/img_rc.py gui/qt4/img.qrc
> /home/ram/YADE/lib/yade-unknown/py/yade/qt/img_rc.py
pyuic4 -o /home/ram/Desktop/tmp/build-unknown/gui/qt4/ui_controller.py gui/qt4/controller.ui
> /home/ram/YADE/lib/yade-unknown/py/yade/qt/ui_controller.py
> /home/ram/YADE/lib/yade-unknown/py/yade/remote.py
> /home/ram/YADE/lib/yade-unknown/py/yade/runtime.py
> /home/ram/YADE/lib/yade-unknown/py/yade/system.py
> /home/ram/YADE/lib/yade-unknown/py/yade/tests/__init__.py
> /home/ram/YADE/lib/yade-unknown/py/yade/tests/clump.py
> /home/ram/YADE/lib/yade-unknown/py/yade/tests/cohesive-chain.py
> /home/ram/YADE/lib/yade-unknown/py/yade/tests/core.py
> /home/ram/YADE/lib/yade-unknown/py/yade/tests/engines.py
> /home/ram/YADE/lib/yade-unknown/py/yade/tests/pbc.py
> /home/ram/YADE/lib/yade-unknown/py/yade/tests/wrapper.py
> /home/ram/YADE/lib/yade-unknown/py/yade/timing.py
> /home/ram/YADE/lib/yade-unknown/py/yade/utils.py
C py/wrapper/yadeWrapper.cpp
L _GLViewer.so
> /home/ram/YADE/lib/yade-unknown/py/yade/qt/_GLViewer.so
> /home/ram/YADE/lib/yade-unknown/py/yade/ymport.py
L wrapper.so
> /home/ram/YADE/lib/yade-unknown/py/yade/wrapper.so
scons: done building targets.

Thanks,
Ram

-- 
You received this question notification because you are a member of
yade-users, which is an answer contact for Yade.
Follow ups

Re: [Question #151388]: installation problem
From: Sergei D., 2011-04-02