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Message #08826
Re: [Question #241137]: Memory error in plotDirections()
Question #241137 on Yade changed:
https://answers.launchpad.net/yade/+question/241137
Status: Open => Answered
Bruno Chareyre proposed the following answer:
Working script is below (note the additional line "key=table.key", I just fixed that in trunk), does it crash for you?
Bruno
_____
from yade import pack
nRead=readParamsFromTable(
num_spheres=1000,# number of spheres
compFricDegree = 30, # contact friction during the confining phase
key='_triax_base_', # put you simulation's name here
unknownOk=True
)
from yade.params import table
key=table.key
num_spheres=table.num_spheres# number of spheres
targetPorosity = 0.43 #the porosity we want for the packing
compFricDegree = table.compFricDegree # initial contact friction during the confining phase (will be decreased during the REFD compaction process)
finalFricDegree = 30 # contact friction during the deviatoric loading
rate=0.02 # loading rate (strain rate)
damp=0.2 # damping coefficient
stabilityThreshold=0.01 # we test unbalancedForce against this value in different loops (see below)
young=5e6 # contact stiffness
mn,mx=Vector3(0,0,0),Vector3(1,1,1) # corners of the initial packing
## create materials for spheres and plates
O.materials.append(FrictMat(young=young,poisson=0.5,frictionAngle=radians(compFricDegree),density=2600,label='spheres'))
O.materials.append(FrictMat(young=young,poisson=0.5,frictionAngle=0,density=0,label='walls'))
## create walls around the packing
walls=aabbWalls([mn,mx],thickness=0,material='walls')
wallIds=O.bodies.append(walls)
sp=pack.SpherePack()
clumps=False #turn this true for the same example with clumps
if clumps:
volume = (mx[0]-mn[0])*(mx[1]-mn[1])*(mx[2]-mn[2])
mean_rad = pow(0.09*volume/num_spheres,0.3333)
c1=pack.SpherePack([((-0.2*mean_rad,0,0),0.5*mean_rad),((0.2*mean_rad,0,0),0.5*mean_rad)])
sp.makeClumpCloud(mn,mx,[c1],periodic=False)
sp.toSimulation(material='spheres')
else:
sp.makeCloud(mn,mx,-1,0.3333,num_spheres,False, 0.95,seed=1) #"seed" make the "random" generation always the same
O.bodies.append([sphere(center,rad,material='spheres') for center,rad in sp])
triax=TriaxialStressController(
maxMultiplier=1.+2e4/young, # spheres growing factor (fast growth)
finalMaxMultiplier=1.+2e3/young, # spheres growing factor (slow growth)
thickness = 0,
stressMask = 7,
internalCompaction=True, # If true the confining pressure is generated by growing particles
)
newton=NewtonIntegrator(damping=damp)
O.engines=[
ForceResetter(),
InsertionSortCollider([Bo1_Sphere_Aabb(),Bo1_Box_Aabb()]),
InteractionLoop(
[Ig2_Sphere_Sphere_ScGeom(),Ig2_Box_Sphere_ScGeom()],
[Ip2_FrictMat_FrictMat_FrictPhys()],
[Law2_ScGeom_FrictPhys_CundallStrack()]
),
## We will use the global stiffness of each body to determine an optimal timestep (see https://yade-dem.org/w/images/1/1b/Chareyre&Villard2005_licensed.pdf)
GlobalStiffnessTimeStepper(active=1,timeStepUpdateInterval=100,timestepSafetyCoefficient=0.8),
triax,
TriaxialStateRecorder(iterPeriod=100,file='WallStresses'+table.key),
newton
]
#Display spheres with 2 colors for seeing rotations better
Gl1_Sphere.stripes=0
if nRead==0: yade.qt.Controller(), yade.qt.View()
triax.goal1=triax.goal2=triax.goal3=10000
while 1:
O.run(1000, True)
#the global unbalanced force on dynamic bodies, thus excluding boundaries, which are not at equilibrium
unb=unbalancedForce()
print 'unbalanced force:',unb,' mean stress: ',triax.meanStress
if unb<stabilityThreshold and abs(10000-triax.meanStress)/10000<0.001:
break
O.save('confinedState'+key+'.yade.gz')
print "### Isotropic state saved ###"
yade.utils.plotDirections()
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