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Re: [Question #248457]: Problem with installing yade from source

To: yade-users@xxxxxxxxxxxxxxxxxxx
From: Anton Gladky <question248457@xxxxxxxxxxxxxxxxxxxxx>
Date: Fri, 09 May 2014 16:51:23 -0000
Reply-to: question248457@xxxxxxxxxxxxxxxxxxxxx
Sender: bounces@xxxxxxxxxxxxx
Question #248457 on Yade changed:
https://answers.launchpad.net/yade/+question/248457

    Status: Open => Answered

Anton Gladky proposed the following answer:
Do you install 1.07 or current git-version?

Anton


2014-05-09 18:06 GMT+02:00 Jiadun Liu <question248457@xxxxxxxxxxxxxxxxxxxxx>:
> New question #248457 on Yade:
> https://answers.launchpad.net/yade/+question/248457
>
> Dear All,
>
> I attempted to install yade from source.
>
> The following results were got.
>
> [  4%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/moc_OpenGLManager.cxx.o
> Linking CXX shared library lib/x86_64-linux-gnu/_GLViewer.so
> [  5%] Built target _GLViewer
> Scanning dependencies of target yade
> [  5%] Building CXX object CMakeFiles/yade.dir/core/Cell.cpp.o
>
> [ 38%] Building CXX object CMakeFiles/yade.dir/pkg/dem/VTKRecorder.cpp.o
> In file included from /usr/include/c++/4.8/backward/strstream:51:0,
>                  from /usr/include/vtk-5.8/vtkIOStream.h:112,
>                  from /usr/include/vtk-5.8/vtkSystemIncludes.h:40,
>                  from /usr/include/vtk-5.8/vtkIndent.h:24,
>                  from /usr/include/vtk-5.8/vtkObjectBase.h:43,
>                  from /usr/include/vtk-5.8/vtkObject.h:41,
>                  from /usr/include/vtk-5.8/vtkCell.h:40,
>                  from /usr/include/vtk-5.8/vtkQuad.h:25,
>                  from /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/VTKRecorder.hpp:3,
>                  from /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/VTKRecorder.cpp:3:
> /usr/include/c++/4.8/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
>  #warning \
> [ 38%] Building CXX object CMakeFiles/yade.dir/pkg/dem/LudingPM.cpp.o
>
> [ 51%] Building CXX object CMakeFiles/yade.dir/pkg/dem/FlowEngine.cpp.o
> In file included from /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/FlowEngine.cpp:28:0:
> /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/FlowEngine.hpp: In member function ‘void FlowEngine::cholmodStats()’:
> /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/FlowEngine.hpp:199:91: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
>       cerr << cholmod_print_common("PFV Cholmod factorization",&(solver->eSolver.cholmod()))<<endl;
>                                                                                            ^
> [ 52%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp.o
>
> [ 61%] Building CXX object CMakeFiles/yade.dir/pkg/dem/STLImporter.cpp.o
> In file included from /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/STLImporter.cpp:10:0:
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp: In member function ‘bool STLReader::open_ascii(const char*, OutV, OutE, OutF, OutN) [with OutV = std::back_insert_iterator<std::vector<double> >; OutE = std::back_insert_iterator<std::vector<int> >; OutF = std::back_insert_iterator<std::vector<int> >; OutN = std::back_insert_iterator<std::vector<double> >]’:
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:120:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
>   fscanf(fp, "%*s %*s %f %f %f\n", &n[0], &n[1], &n[2]);
>   ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:121:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
>   fscanf(fp, "%*s %*s");
>   ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:122:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
>   fscanf(fp, "%*s %f %f %f\n", &v[0][0],  &v[0][1],  &v[0][2]);
>   ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:123:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
>   fscanf(fp, "%*s %f %f %f\n", &v[1][0],  &v[1][1],  &v[1][2]);
>   ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:124:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
>   fscanf(fp, "%*s %f %f %f\n", &v[2][0],  &v[2][1],  &v[2][2]);
>   ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:125:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
>   fscanf(fp, "%*s"); // end loop
>   ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:126:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
>   fscanf(fp, "%*s"); // end facet
>   ^
> [ 62%] Building CXX object CMakeFiles/yade.dir/pkg/common/PyRunner.cpp.o
>
> [ 95%] Building CXX object CMakeFiles/yade.dir/lib/triangulation/TriaxialState.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/libyade.so
> [ 95%] Built target yade
> Scanning dependencies of target boot
> [ 95%] Building CXX object CMakeFiles/boot.dir/core/main/pyboot.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/boot.so
> [ 95%] Built target boot
> Scanning dependencies of target WeightedAverage2d
> [ 95%] Building CXX object py/CMakeFiles/WeightedAverage2d.dir/WeightedAverage2d.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/WeightedAverage2d.so
> [ 95%] Built target WeightedAverage2d
> Scanning dependencies of target _customConverters
> [ 96%] Building CXX object py/CMakeFiles/_customConverters.dir/wrapper/customConverters.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/_customConverters.so
> [ 96%] Built target _customConverters
> Scanning dependencies of target _packObb
> [ 96%] Building CXX object py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/_packObb.so
> [ 96%] Built target _packObb
> Scanning dependencies of target _packPredicates
> [ 97%] Building CXX object py/CMakeFiles/_packPredicates.dir/pack/_packPredicates.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/_packPredicates.so
> [ 97%] Built target _packPredicates
> Scanning dependencies of target _packSpheres
> [ 98%] Building CXX object py/CMakeFiles/_packSpheres.dir/pack/_packSpheres.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/_packSpheres.so
> [ 98%] Built target _packSpheres
> Scanning dependencies of target _polyhedra_utils
> [ 98%] Building CXX object py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o
> In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
>                  from /home/jiadun/myYade/trunk/trunk-1.07.0/py/_polyhedra_utils.cpp:17:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it by " \
>   ^
> Linking CXX shared library lib/x86_64-linux-gnu/_polyhedra_utils.so
> [ 98%] Built target _polyhedra_utils
> Scanning dependencies of target _utils
> [ 99%] Building CXX object py/CMakeFiles/_utils.dir/_utils.cpp.o
> In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
>                  from /home/jiadun/myYade/trunk/trunk-1.07.0/py/_utils.cpp:18:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it by " \
>   ^
> Linking CXX shared library lib/x86_64-linux-gnu/_utils.so
> [ 99%] Built target _utils
> Scanning dependencies of target wrapper
> [100%] Building CXX object py/CMakeFiles/wrapper.dir/wrapper/yadeWrapper.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/wrapper.so
> [100%] Built target wrapper
>
> make doc
> Scanning dependencies of target doc
> Welcome to Yade 1.07.0
> TCP python prompt on localhost:9000, auth cookie `sdacyk'
> XMLRPC info provider on http://localhost:21000
> Running script yadeSphinx.py
> Running Sphinx v1.2.2
>
> Exception occurred:
>   File "/home/jiadun/myYade/build/doc/sphinx/ipython_directive.py", line 83, in <module>
>     from IPython.Shell import MatplotlibShell
> ImportError: No module named Shell
> The full traceback has been saved in /tmp/sphinx-err-6ZrDDH.log, if you want to report the issue to the developers.
> Please also report this if it was a user error, so that a better error message can be provided next time.
> A bug report can be filed in the tracker at <https://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks!
> Traceback (most recent call last):
>   File "/home/jiadun/myYade/trunk/install/bin/yade-1.07.0", line 178, in runScript
>     execfile(script,globals())
>   File "yadeSphinx.py", line 222, in <module>
>     makeBaseClassesClickable((outDir+'/html/yade.wrapper.html'),writer)
>   File "yadeSphinx.py", line 154, in makeBaseClassesClickable
>     for l in open(f):
> IOError: [Errno 2] No such file or directory: '_build/html/yade.wrapper.html'
> Traceback (most recent call last):
>   File "/home/jiadun/myYade/trunk/install/bin/yade-1.07.0", line 273, in <module>
>     userSession(qt4=True,qapp=qapp)
>   File "/home/jiadun/myYade/trunk/install/bin/yade-1.07.0", line 208, in userSession
>     from IPython.Shell import IPShellEmbed
> ImportError: No module named Shell
> make[3]: *** [doc] Error 1
> make[2]: *** [CMakeFiles/doc.dir/all] Error 2
> make[1]: *** [CMakeFiles/doc.dir/rule] Error 2
> make: *** [doc] Error 2
>
> jiadun@jiadun-Lenovo-IdeaPad-Z500:~/myYade/trunk/install/bin$ ./yade-1.07.0
> Welcome to Yade 1.07.0
> TCP python prompt on localhost:9000, auth cookie `cysaek'
> XMLRPC info provider on http://localhost:21000
> Traceback (most recent call last):
>   File "./yade-1.07.0", line 273, in <module>
>     userSession(qt4=True,qapp=qapp)
>   File "./yade-1.07.0", line 208, in userSession
>     from IPython.Shell import IPShellEmbed
> ImportError: No module named Shell
>
> Best regards,
> Jiadun
>
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