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[Zixuan Xu <question252930@xxxxxxxxxxxxxxxxxxxxx>]

New question #252930 on Yade:
https://answers.launchpad.net/yade/+question/252930

Hi, all

I'm trying to install yade in redhat. I tried to compile it from source, and I installed all the necessary prerequisites (not optional). But there was an error when I tried to compile it. Please help. Thanks in advance. 

[root@node01 build]# cmake -DINSTALL_PREFIX=/root/Yade/Yade/install /root/Yade/Yade/trunk
-- The C compiler identification is GNU 4.4.6
-- The CXX compiler identification is GNU 4.4.6
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found PythonLibs: /usr/local/lib/libpython2.7.a (found version "2.7.8") 
-- Found PythonInterp: /usr/local/bin/python (found version "2.7.8") 
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp  
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found
-- Found Qt4: /usr/bin/qmake-qt4 (found version "4.5.3") 
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") 
-- Version is set to 2014-07-28.git-f4a1f2b
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib64/libX11.so
-- Found OpenGL: /usr/lib64/libGL.so  
-- GSL using pkgconfig
-- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig
-- PKGCONFIG() indicates that gts is not installed (install the package which contains gts.pc if you want to support this feature)
FindGTS.cmake: gts-config/pkg-config gts not found. Please set it manually. GTS_CONFIG=GTS_CONFIG-NOTFOUND
-- ERROR: GTS was not found.
-- Could NOT find GL2PS (missing:  GL2PS_LIBRARY GL2PS_INCLUDE_DIR) 
-- CGAL not found.
-- Found NumPy: version "1.8.1" /usr/local/lib/python2.7/site-packages/numpy/core/include
-- Found Loki: /usr/include  
-- Boost version: 1.56.0
-- Found the following Boost libraries:
--   python
--   thread
--   filesystem
--   iostreams
--   regex
--   serialization
--   system
--   date_time
--   Boost_VERSION: 105600
--   Boost_LIB_VERSION: 1_56
--   Boost_INCLUDE_DIRS: /usr/local/include
--   Boost_LIBRARIES: /usr/local/lib/libboost_python.so/usr/local/lib/libboost_thread.so/usr/local/lib/libboost_filesystem.so/usr/local/lib/libboost_iostreams.so/usr/local/lib/libboost_regex.so/usr/local/lib/libboost_serialization.so/usr/local/lib/libboost_system.so/usr/local/lib/libboost_date_time.so
-- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") 
-- Found BZip2: /usr/lib64/libbz2.so (found version "1.0.5") 
-- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so
-- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.3") 
-- Found Eigen3, version: 3.2.1
-- Disable vectorization
-- Found VTK
-- Found OpenMP
-- GSL using pkgconfig
-- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig
-- PKGCONFIG() indicates that gts is not installed (install the package which contains gts.pc if you want to support this feature)
FindGTS.cmake: gts-config/pkg-config gts not found. Please set it manually. GTS_CONFIG=GTS_CONFIG-NOTFOUND
-- ERROR: GTS was not found.
-- checking for one of the modules 'glib-2.0'
-- Found GLib2: glib-2.0 /usr/include/glib-2.0;/usr/lib64/glib-2.0/include
-- Looking for include file glib/gregex.h
-- Looking for include file glib/gregex.h - found
-- GTS NOT found
-- Found Qt4: /usr/bin/qmake-qt4 (found version "4.5.3") 
-- Found GLUT: /usr/local/lib/libglut.so  
-- Found QGLViewer: /usr/lib/libQGLViewer.so
-- Found GUI-LIBS
-- GMP libs: /usr/lib64/libgmp.so /usr/lib64/libgmpxx.so
-- Found GMP: /usr/include  
-- CGAL not found.
-- GMP libs: /usr/lib64/libgmp.so /usr/lib64/libgmpxx.so
-- CGAL NOT found
-- CGAL NOT found: PFVFLOW disabled
-- Could NOT find Cholmod (missing:  CHOLMOD_LIBRARIES CHOLMOD_INCLUDE_DIR AMD_LIBRARY CAMD_LIBRARY COLAMD_LIBRARY CCOLAMD_LIBRARY) 
-- Could NOT find OpenBlas (missing:  OPENBLAS_LIBRARY) 
-- Could NOT find Metis (missing:  METIS_INCLUDE_DIR METIS_LIBRARY) 
-- Missing dependency for LINSOLV, disabled
-- Could NOT find GL2PS (missing:  GL2PS_LIBRARY GL2PS_INCLUDE_DIR) 
-- GL2PS NOT found
LBMFLOW is still experimental, building and running LBM engine are at your own risk!
Yade will be installed to /root/Yade/Yade/install
-- Suffix is set to -2014-07-28.git-f4a1f2b
-- LIBRARY_OUTPUT_PATH is set to lib64
-- runtimePREFIX is set to /root/Yade/Yade/install
Traceback (most recent call last):
  File "/usr/bin/pyuic4", line 6, in <module>
    from PyQt4 import QtCore
ImportError: No module named PyQt4
-- Could NOT find minieigen (missing:  PY_minieigen) 
-- Use embedded version of minieigen. Please, consider installing the corresponding package
-- Found Tkinter: /usr/local/lib/python2.7/lib-tk/Tkinter.pyc  
-- VTK version 6 is found
-- ===========================================================
-- Yade configured with following features: Odeint VTK OpenMP GUI LBMFLOW
-- Disabled features: GTS CGAL PFVFLOW LINSOLV SPH LIQMIGRATION GL2PS MASK_ARBITRARY
-- Optimized build
-- ===========================================================
-- Configuring done
-- Generating done
-- Build files have been written to: /root/Yade/Yade/build


[root@node01 build]# make
[  1%] Generating qt4/moc_OpenGLManager.cxx
[  2%] Generating qt4/moc_GLViewer.cxx
Scanning dependencies of target _GLViewer
[  3%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/GLViewer.cpp.o
[  3%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/_GLViewer.cpp.o
[  4%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/OpenGLManager.cpp.o
[  5%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/GLViewerDisplay.cpp.o
[  6%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/GLViewerMouse.cpp.o
[  6%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/moc_GLViewer.cxx.o
[  7%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/moc_OpenGLManager.cxx.o
Linking CXX shared library lib64/_GLViewer.so
/usr/bin/ld: /usr/local/lib/libpython2.7.a(abstract.o): relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a shared object; recompile with -fPIC
/usr/local/lib/libpython2.7.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[2]: *** [gui/lib64/_GLViewer.so] Error 1
make[1]: *** [gui/CMakeFiles/_GLViewer.dir/all] Error 2
make: *** [all] Error 2

Zixuan Xu

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