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Message #14223
[Question #482687]: make doc error
New question #482687 on Yade:
https://answers.launchpad.net/yade/+question/482687
Hi Yaders,
After executing the order 'make install', installing yade by source code, I would like to build the documentation. But when I execute 'make doc', the errors come out. I would like to know how to solve it. And if it couldn't be solved, these errors have influence in using Yade?
This is the output in the terminal:
hjz@hjz-ubuntu:~/yade2017/build$ sudo make doc
Scanning dependencies of target doc
Welcome to Yade 2017.01a
TCP python prompt on localhost:9000, auth cookie `dakuse'
XMLRPC info provider on http://localhost:21000
Running script yadeSphinx.py
warning: unable to convert `\araa'
warning: unable to convert `\aj'
warning: reference `dec' undefined
warning: unable to convert `\aap'
warning: reference `aug' undefined
Running Sphinx v1.3.6
WARNING: the config value 'my_maketitle' is set to a string with non-ASCII characters; this can lead to Unicode errors occurring. Please use Unicode strings, e.g. u'Content'.
WARNING: extension 'youtube' has no setup() function; is it really a Sphinx extension module?
building [mo]: all of 0 po files
building [html]: all source files
updating environment: 39 added, 0 changed, 0 removed
reading sources... [ 33%] introduction
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 117
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
NameError: name 'yade' is not defined
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 321
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.bodies[100]
IndexError: Body id out of range.
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 327
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.bodies.append(s)
IndexError: Body already has id 0 set; appending such body (for the second time) is not allowed.
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 382
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.interactions[100,10111]
IndexError: No such interaction
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 399
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.forces.addF(0,Vector3(1,2,3))
NameError: name 'Vector3' is not defined
<<<-------------------------------------------------------------------------
reading sources... [ 38%] prog
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 405
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 Vector3(1,2,3).cross(Vector3(0,0,1))
NameError: name 'Vector3' is not defined
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 405
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 Quaternion(Vector3(0,0,1),pi/2)
NameError: name 'Quaternion' is not defined
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 434
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 Sphere().name ## getClassName()
AttributeError: 'Sphere' object has no attribute 'name'
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 562
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.engines=[GravityEngine(gravity=Vector3(0,0,-9.81))]
NameError: name 'Vector3' is not defined
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 1466
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.forces.addF(0,Vector3(1,2,3))
NameError: name 'Vector3' is not defined
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 1466
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.forces.f(100)
IndexError: Body id out of range.
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 1636
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 f1.force=Vector3(0,-1,-2)
NameError: name 'Vector3' is not defined
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 1646
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 f2=ForceEngine(ids=[0,4,5],force=Vector3(0,-1,-2))
NameError: name 'Vector3' is not defined
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 1646
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 print f2.dict()
NameError: name 'f2' is not defined
<<<-------------------------------------------------------------------------
reading sources... [ 58%] tutorial-hands-on
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/tutorial-hands-on.rst at block ending on line 197
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 a[3] # error
IndexError: list index out of range
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/tutorial-hands-on.rst at block ending on line 226
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 b[0]=4 # error
TypeError: 'tuple' object does not support item assignment
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/tutorial-hands-on.rst at block ending on line 383
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.bodies[1].shape.radius # radius of body #1 (will give error if not sphere, since only spheres have radius defined)
AttributeError: 'NoneType' object has no attribute 'shape'
<<<-------------------------------------------------------------------------
ERROR /home/hjz/yade2017/trunk/pkg/common/InsertionSortCollider.cpp:240 action: verletDist is set to 0 because no spheres were found. It will result in suboptimal performances, consider setting a positive verletDist in your script.
reading sources... [ 64%] user
>>>-------------------------------------------------------------------------
Warning in /home/hjz/yade2017/build/doc/sphinx/user.rst at block ending on line 887
Specify :okwarning: as an option in the ipython:: block to suppress this message
----------------------------------------------------------------------------
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/utils.py:60: UserWarning: Overwriting yade.params.ab which already exists.
if mark in yade.params.__dict__: warnings.warn('Overwriting yade.params.%s which already exists.'%mark)
<<<-------------------------------------------------------------------------
reading sources... [100%] yade.ymport
/home/hjz/yade2017/build/doc/sphinx/index-toctree-manuals.rst:6: WARNING: toctree contains reference to nonexisting document u'fullPublications'
/home/hjz/yade2017/build/doc/sphinx/index-toctree-reference.rst:5: WARNING: toctree contains reference to nonexisting document u'fullPublications'
/home/hjz/yade2017/build/doc/sphinx/index-toctree-theory.rst:5: WARNING: toctree contains reference to nonexisting document u'fullPublications'
/home/hjz/yade2017/build/doc/sphinx/publications.rst:127: WARNING: Inline emphasis start-string without end-string.
/home/hjz/yade2017/build/doc/sphinx/publications.rst:429: WARNING: Duplicate explicit target name: "maurin2015".
/home/hjz/yade2017/build/doc/sphinx/publications.rst:429: WARNING: duplicate citation Maurin2015, other instance in /home/hjz/yade2017/build/doc/sphinx/publications.rst
/home/hjz/yade2017/build/doc/sphinx/yade.wrapper.rst:1: WARNING: malformed hyperlink target.
looking for now-outdated files... none found
pickling environment... done
checking consistency... /home/hjz/yade2017/build/doc/sphinx/consulting.rst:: WARNING: document isn't included in any toctree
/home/hjz/yade2017/build/doc/sphinx/index-toctree-book.rst:: WARNING: document isn't included in any toctree
/home/hjz/yade2017/build/doc/sphinx/index-toctree_manuals.rst:: WARNING: document isn't included in any toctree
done
preparing documents... done
WARNING: LaTeX command 'latex' cannot be run (needed for math display), check the pngmath_latex setting
writing output... [100%] yade.ymport
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/utils.py:docstring of yade.utils.UnstructuredGrid:None: WARNING: more than one target found for cross-reference u'dict': yade.wrapper.Facet.dict, yade.wrapper.InsertionSortCollider.dict, yade.wrapper.ViscElCapMat.dict, yade.wrapper.LinearDragEngine.dict, yade.wrapper.Law2_ScGeom_JCFpmPhys_JointedCohesiveFrictionalPM.dict, yade.wrapper.CapillaryStressRecorder.dict, yade.wrapper.PFacet.dict, yade.wrapper.LawDispatcher.dict, yade.wrapper.FlowEngine_PeriodicInfo.dict, yade.wrapper.GridCoGridCoGeom.dict, yade.wrapper.CohesiveTriaxialTest.dict, yade.wrapper.NewtonIntegrator.dict, yade.wrapper.ViscElMat.dict, yade.wrapper.HydrodynamicsLawLBM.dict, yade.wrapper.CohFrictPhys.dict, yade.wrapper.Bo1_Polyhedra_Aabb.dict, yade.wrapper.Law2_ScGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.IPhys.dict, yade.wrapper.GlobalStiffnessTimeStepper.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom6D.dict, yade.wrapper.Ip2_FrictMat_CpmMat_FrictPhys.dict, yade.wrapper.TetraVolumetricLaw.dict, yade.wrapper.KinemCNSEngine.dict, yade.wrapper.Gl1_GridConnection.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_HertzWithLinearShear.dict, yade.wrapper.GridNodeGeom6D.dict, yade.wrapper.CohesiveDeformableElementMaterial.dict, yade.wrapper.KinemSimpleShearBox.dict, yade.wrapper.Law2_L6Geom_FrictPhys_Linear.dict, yade.wrapper.L6Geom.dict, yade.wrapper.GlIPhysDispatcher.dict, yade.wrapper.CohFrictMat.dict, yade.wrapper.Bo1_PFacet_Aabb.dict, yade.wrapper.SumIntrForcesCb.dict, yade.wrapper.MindlinPhys.dict, yade.wrapper.Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.dict, yade.wrapper.CpmStateUpdater.dict, yade.wrapper.Tetra.dict, yade.wrapper.Gl1_PolyhedraPhys.dict, yade.wrapper.HelixEngine.dict, yade.wrapper.ThreeDTriaxialEngine.dict, yade.wrapper.JCFpmState.dict, yade.wrapper.Bo1_Tetra_Aabb.dict, yade.wrapper.Law2_ScGeom_MortarPhys_Lourenco.dict, yade.wrapper.Ig2_Sphere_Sphere_L3Geom.dict, yade.wrapper.Box.dict, yade.wrapper.PolyhedraSplitter.dict, yade.wrapper.LinCohesiveStiffPropDampElastMat.dict, yade.wrapper.TimeStepper.dict, yade.wrapper.Gl1_Box.dict, yade.wrapper.Gl1_Tetra.dict, yade.wrapper.TriaxialTest.dict, yade.wrapper.PeriTriaxController.dict, yade.wrapper.InternalForceFunctor.dict, yade.wrapper.AxialGravityEngine.dict, yade.wrapper.Gl1_PolyhedraGeom.dict, yade.wrapper.VTKRecorder.dict, yade.wrapper.Bo1_ChainedCylinder_Aabb.dict, yade.wrapper.Ip2_2xNormalInelasticMat_NormalInelasticityPhys.dict, yade.wrapper.Bound.dict, yade.wrapper.BubbleMat.dict, yade.wrapper.KinematicEngine.dict, yade.wrapper.RotationEngine.dict, yade.wrapper.ResetRandomPosition.dict, yade.wrapper.Ip2_CpmMat_CpmMat_CpmPhys.dict, yade.wrapper.FrictPhys.dict, yade.wrapper.Law2_ScGeom_BubblePhys_Bubble.dict, yade.wrapper.FieldApplier.dict, yade.wrapper.Gl1_CpmPhys.dict, yade.wrapper.PeriodicEngine.dict, yade.wrapper.NormPhys.dict, yade.wrapper.GenericSpheresContact.dict, yade.wrapper.BicyclePedalEngine.dict, yade.wrapper.TTetraSimpleGeom.dict, yade.wrapper.Body.dict, yade.wrapper.WirePhys.dict, yade.wrapper.Gl1_PFacet.dict, yade.wrapper.Interaction.dict, yade.wrapper.DeformableCohesiveElement.dict, yade.wrapper.TTetraGeom.dict, yade.wrapper.CohesiveFrictionalContactLaw.dict, yade.wrapper.Law2_CylScGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.Collider.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_ScGeom.dict, yade.wrapper.Node.dict, yade.wrapper.PeriIsoCompressor.dict, yade.wrapper.LBMnode.dict, yade.wrapper.FrictViscoMat.dict, yade.wrapper.MicroMacroAnalyser.dict, yade.wrapper.Material.dict, yade.wrapper.GlBoundDispatcher.dict, yade.wrapper.Law2_ScGeom_ViscoFrictPhys_CundallStrack.dict, yade.wrapper.GridConnection.dict, yade.wrapper.GlExtra_OctreeCubes.dict, yade.wrapper.Gl1_Cylinder.dict, yade.wrapper.Ip2_ViscElCapMat_ViscElCapMat_ViscElCapPhys.dict, yade.wrapper.Law2_ScGeom_FrictViscoPhys_CundallStrackVisco.dict, yade.wrapper.GlStateDispatcher.dict, yade.wrapper.Shape.dict, yade.wrapper.OpenGLRenderer.dict, yade.wrapper.Ip2_ElastMat_ElastMat_NormShearPhys.dict, yade.wrapper.ChCylGeom6D.dict, yade.wrapper.PolyhedraGeom.dict, yade.wrapper.Ig2_Facet_Polyhedra_PolyhedraGeom.dict, yade.wrapper.NormalInelasticityPhys.dict, yade.wrapper.Ig2_Tetra_Tetra_TTetraSimpleGeom.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom.dict, yade.wrapper.CapillaryPhys.dict, yade.wrapper.LawTester.dict, yade.wrapper.Ig2_Sphere_Sphere_ScGeom.dict, yade.wrapper.ViscoFrictPhys.dict, yade.wrapper.GlobalEngine.dict, yade.wrapper.Gl1_NormPhys.dict, yade.wrapper.Clump.dict, yade.wrapper.IPhysFunctor.dict, yade.wrapper.Cylinder.dict, yade.wrapper.Ig2_GridNode_GridNode_GridNodeGeom6D.dict, yade.wrapper.SnapshotEngine.dict, yade.wrapper.TorqueRecorder.dict, yade.wrapper.ParallelEngine.dict, yade.wrapper.InelastCohFrictPhys.dict, yade.wrapper.Bo1_Box_Aabb.dict, yade.wrapper.FlowEngineT.dict, yade.wrapper.Ip2_ViscElMat_ViscElMat_ViscElPhys.dict, yade.wrapper.PersistentTriangulationCollider.dict, yade.wrapper.Bo1_Wall_Aabb.dict, yade.wrapper.Ig2_Wall_Sphere_L3Geom.dict, yade.wrapper.TriaxialStateRecorder.dict, yade.wrapper.Ig2_Facet_Sphere_ScGeom.dict, yade.wrapper.Law2_ScGeom6D_InelastCohFrictPhys_CohesionMoment.dict, yade.wrapper.Law2_ChCylGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.MortarMat.dict, yade.wrapper.Ig2_Wall_PFacet_ScGeom.dict, yade.wrapper.LudingMat.dict, yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement.dict, yade.wrapper.Gl1_Node.dict, yade.wrapper.Ip2_FrictMat_FrictMat_ViscoFrictPhys.dict, yade.wrapper.ZECollider.dict, yade.wrapper.Ip2_MortarMat_MortarMat_MortarPhys.dict, yade.wrapper.IntrCallback.dict, yade.wrapper.TesselationWrapper.dict, yade.wrapper.StepDisplacer.dict, yade.wrapper.ElasticContactLaw.dict, yade.wrapper.GlShapeDispatcher.dict, yade.wrapper.Ip2_FrictMat_FrictViscoMat_FrictViscoPhys.dict, yade.wrapper.Ip2_JCFpmMat_JCFpmMat_JCFpmPhys.dict, yade.wrapper.Lin4NodeTetra.dict, yade.wrapper.IGeom.dict, yade.wrapper.Ig2_ChainedCylinder_ChainedCylinder_ScGeom6D.dict, yade.wrapper.Dispatcher.dict, yade.wrapper.CombinedKinematicEngine.dict, yade.wrapper.LBMlink.dict, yade.wrapper.Law2_ScGeom_LudingPhys_Basic.dict, yade.wrapper.Ip2_WireMat_WireMat_WirePhys.dict, yade.wrapper.Law2_ScGeom_ViscElCapPhys_Basic.dict, yade.wrapper.SimpleShear.dict, yade.wrapper.Bo1_Sphere_Aabb.dict, yade.wrapper.Engine.dict, yade.wrapper.ScGeom6D.dict, yade.wrapper.LudingPhys.dict, yade.wrapper.LBMbody.dict, yade.wrapper.KinemCNLEngine.dict, yade.wrapper.KinemCNDEngine.dict, yade.wrapper.WireState.dict, yade.wrapper.DragEngine.dict, yade.wrapper.CircularFactory.dict, yade.wrapper.Gl1_Sphere.dict, yade.wrapper.Scene.dict, yade.wrapper.Ip2_ElastMat_ElastMat_NormPhys.dict, yade.wrapper.Gl1_Aabb.dict, yade.wrapper.GlShapeFunctor.dict, yade.wrapper.Ip2_PolyhedraMat_PolyhedraMat_PolyhedraPhys.dict, yade.wrapper.TriaxialStressController.dict, yade.wrapper.ChainedState.dict, yade.wrapper.Law2_GridCoGridCoGeom_FrictPhys_CundallStrack.dict, yade.wrapper.HarmonicMotionEngine.dict, yade.wrapper.Law2_ScGridCoGeom_CohFrictPhys_CundallStrack.dict, yade.wrapper.RadialForceEngine.dict, yade.wrapper.Functor.dict, yade.wrapper.GeneralIntegratorInsertionSortCollider.dict, yade.wrapper.ScGridCoGeom.dict, yade.wrapper.IGeomDispatcher.dict, yade.wrapper.ElastMat.dict, yade.wrapper.Law2_ScGeom_ViscElPhys_Basic.dict, yade.wrapper.MatchMaker.dict, yade.wrapper.ServoPIDController.dict, yade.wrapper.GlIGeomFunctor.dict, yade.wrapper.Law2_CylScGeom_FrictPhys_CundallStrack.dict, yade.wrapper.HdapsGravityEngine.dict, yade.wrapper.CylScGeom6D.dict, yade.wrapper.Ig2_Sphere_GridConnection_ScGridCoGeom.dict, yade.wrapper.Cell.dict, yade.wrapper.JCFpmPhys.dict, yade.wrapper.WireMat.dict, yade.wrapper.Serializable.dict, yade.wrapper.NormShearPhys.dict, yade.wrapper.SpheresFactory.dict, yade.wrapper.Law2_ScGeom_CpmPhys_Cpm.dict, yade.wrapper.Bo1_Facet_Aabb.dict, yade.wrapper.GravityEngine.dict, yade.wrapper.Ip2_FrictViscoMat_FrictViscoMat_FrictViscoPhys.dict, yade.wrapper.KinemCTDEngine.dict, yade.wrapper.BubblePhys.dict, yade.wrapper.Ip2_FrictMat_FrictMat_MindlinPhys.dict, yade.wrapper.BoundDispatcher.dict, yade.wrapper.InterpolatingHelixEngine.dict, yade.wrapper.Law2_ScGeom_FrictPhys_CundallStrack.dict, yade.wrapper.Bo1_GridConnection_Aabb.dict, yade.wrapper.Ip2_BubbleMat_BubbleMat_BubblePhys.dict, yade.wrapper.BoundFunctor.dict, yade.wrapper.Bo1_Cylinder_Aabb.dict, yade.wrapper.Law2_TTetraSimpleGeom_NormPhys_Simple.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_PolyhedraGeomOrScGeom.dict, yade.wrapper.Integrator.dict, yade.wrapper.MindlinCapillaryPhys.dict, yade.wrapper.Gl1_Polyhedra.dict, yade.wrapper.IPhysDispatcher.dict, yade.wrapper.Ip2_FrictMat_FrictMat_FrictPhys.dict, yade.wrapper.If2_2xLin4NodeTetra_LinCohesiveStiffPropDampElastMat.dict, yade.wrapper.NormalInelasticMat.dict, yade.wrapper.FacetTopologyAnalyzer.dict, yade.wrapper.GlIPhysFunctor.dict, yade.wrapper.Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.dict, yade.wrapper.SpatialQuickSortCollider.dict, yade.wrapper.Gl1_L3Geom.dict, yade.wrapper.PeriodicFlowEngine.dict, yade.wrapper.Law2_L3Geom_FrictPhys_ElPerfPl.dict, yade.wrapper.TriaxialCompressionEngine.dict, yade.wrapper.Disp2DPropLoadEngine.dict, yade.wrapper.JCFpmMat.dict, yade.wrapper.PolyhedraMat.dict, yade.wrapper.RungeKuttaCashKarp54Integrator.dict, yade.wrapper.GlStateFunctor.dict, yade.wrapper.Bo1_DeformableElement_Aabb.dict, yade.wrapper.BoundaryController.dict, yade.wrapper.TranslationEngine.dict, yade.wrapper.InelastCohFrictMat.dict, yade.wrapper.Law2_ScGridCoGeom_FrictPhys_CundallStrack.dict, yade.wrapper.DeformableElementMaterial.dict, yade.wrapper.GlIGeomDispatcher.dict, yade.wrapper.TorqueEngine.dict, yade.wrapper.FrictViscoPhys.dict, yade.wrapper.Recorder.dict, yade.wrapper.ChainedCylinder.dict, yade.wrapper.Polyhedra.dict, yade.wrapper.Ig2_Tetra_Tetra_TTetraGeom.dict, yade.wrapper.FEInternalForceEngine.dict, yade.wrapper.Ip2_FrictMat_PolyhedraMat_FrictPhys.dict, yade.wrapper.Gl1_Wall.dict, yade.wrapper.CpmMat.dict, yade.wrapper.LawFunctor.dict, yade.wrapper.CpmState.dict, yade.wrapper.Sphere.dict, yade.wrapper.LinCohesiveElasticMaterial.dict, yade.wrapper.Gl1_L6Geom.dict, yade.wrapper.LinIsoRayleighDampElastMat.dict, yade.wrapper.BoxFactory.dict, yade.wrapper.Law2_ScGeom_CapillaryPhys_Capillarity.dict, yade.wrapper.Ig2_Wall_Polyhedra_PolyhedraGeom.dict, yade.wrapper.FlowEngine.dict, yade.wrapper.Wall.dict, yade.wrapper.PolyhedraPhys.dict, yade.wrapper.Gl1_DeformableElement.dict, yade.wrapper.Ig2_Facet_Sphere_ScGeom6D.dict, yade.wrapper.InteractionLoop.dict, yade.wrapper.Ig2_Sphere_PFacet_ScGridCoGeom.dict, yade.wrapper.CapillaryTriaxialTest.dict, yade.wrapper.MortarPhys.dict, yade.wrapper.Gl1_Facet.dict, yade.wrapper.PyRunner.dict, yade.wrapper.Ig2_Sphere_Sphere_ScGeom6D.dict, yade.wrapper.CentralGravityEngine.dict, yade.wrapper.UniaxialStrainer.dict, yade.wrapper.FrictMat.dict, yade.wrapper.CylScGeom.dict, yade.wrapper.GlExtra_LawTester.dict, yade.wrapper.Law2_ScGeom_WirePhys_WirePM.dict, yade.wrapper.InternalForceDispatcher.dict, yade.wrapper.Ig2_Sphere_Sphere_L6Geom.dict, yade.wrapper.Law2_PolyhedraGeom_PolyhedraPhys_Volumetric.dict, yade.wrapper.GridNode.dict, yade.wrapper.FileGenerator.dict, yade.wrapper.Ig2_Sphere_ChainedCylinder_CylScGeom6D.dict, yade.wrapper.Ig2_PFacet_PFacet_ScGeom.dict, yade.wrapper.CpmPhys.dict, yade.wrapper.Ig2_Facet_Sphere_L3Geom.dict, yade.wrapper.ForceResetter.dict, yade.wrapper.Ip2_FrictMat_FrictMat_CapillaryPhys.dict, yade.wrapper.ViscElPhys.dict, yade.wrapper.EnergyTracker.dict, yade.wrapper.Ig2_Sphere_ChainedCylinder_CylScGeom.dict, yade.wrapper.Ig2_GridConnection_GridConnection_GridCoGridCoGeom.dict, yade.wrapper.Aabb.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_MindlinDeresiewitz.dict, yade.wrapper.GlBoundFunctor.dict, yade.wrapper.State.dict, yade.wrapper.ScGeom.dict, yade.wrapper.Peri3dController.dict, yade.wrapper.InterpolatingDirectedForceEngine.dict, yade.wrapper.ForceRecorder.dict, yade.wrapper.Ig2_GridConnection_PFacet_ScGeom.dict, yade.wrapper.PartialEngine.dict, yade.wrapper.ViscElCapPhys.dict, yade.wrapper.L3Geom.dict, yade.wrapper.FlatGridCollider.dict, yade.wrapper.DeformableElement.dict, yade.wrapper.Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.dict, yade.wrapper.Ip2_LudingMat_LudingMat_LudingPhys.dict, yade.wrapper.LinIsoElastMat.dict, yade.wrapper.HarmonicRotationEngine.dict, yade.wrapper.Law2_ScGeom6D_NormalInelasticityPhys_NormalInelasticity.dict, yade.wrapper.ForceEngine.dict, yade.wrapper.Bo1_Node_Aabb.dict, yade.wrapper.Ig2_Sphere_Polyhedra_ScGeom.dict, yade.wrapper.IGeomFunctor.dict, yade.wrapper.Ig2_Wall_Sphere_ScGeom.dict, yade.wrapper.DomainLimiter.dict, yade.wrapper.Gl1_ChainedCylinder.dict, yade.wrapper.If2_Lin4NodeTetra_LinIsoRayleighDampElast.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_PolyhedraGeom.dict, yade.wrapper.GlExtraDrawer.dict, yade.wrapper.HydroForceEngine.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_Mindlin.dict
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/utils.py:docstring of yade.utils.UnstructuredGrid:None: WARNING: more than one target found for cross-reference u'dict': yade.wrapper.Facet.dict, yade.wrapper.InsertionSortCollider.dict, yade.wrapper.ViscElCapMat.dict, yade.wrapper.LinearDragEngine.dict, yade.wrapper.Law2_ScGeom_JCFpmPhys_JointedCohesiveFrictionalPM.dict, yade.wrapper.CapillaryStressRecorder.dict, yade.wrapper.PFacet.dict, yade.wrapper.LawDispatcher.dict, yade.wrapper.FlowEngine_PeriodicInfo.dict, yade.wrapper.GridCoGridCoGeom.dict, yade.wrapper.CohesiveTriaxialTest.dict, yade.wrapper.NewtonIntegrator.dict, yade.wrapper.ViscElMat.dict, yade.wrapper.HydrodynamicsLawLBM.dict, yade.wrapper.CohFrictPhys.dict, yade.wrapper.Bo1_Polyhedra_Aabb.dict, yade.wrapper.Law2_ScGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.IPhys.dict, yade.wrapper.GlobalStiffnessTimeStepper.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom6D.dict, yade.wrapper.Ip2_FrictMat_CpmMat_FrictPhys.dict, yade.wrapper.TetraVolumetricLaw.dict, yade.wrapper.KinemCNSEngine.dict, yade.wrapper.Gl1_GridConnection.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_HertzWithLinearShear.dict, yade.wrapper.GridNodeGeom6D.dict, yade.wrapper.CohesiveDeformableElementMaterial.dict, yade.wrapper.KinemSimpleShearBox.dict, yade.wrapper.Law2_L6Geom_FrictPhys_Linear.dict, yade.wrapper.L6Geom.dict, yade.wrapper.GlIPhysDispatcher.dict, yade.wrapper.CohFrictMat.dict, yade.wrapper.Bo1_PFacet_Aabb.dict, yade.wrapper.SumIntrForcesCb.dict, yade.wrapper.MindlinPhys.dict, yade.wrapper.Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.dict, yade.wrapper.CpmStateUpdater.dict, yade.wrapper.Tetra.dict, yade.wrapper.Gl1_PolyhedraPhys.dict, yade.wrapper.HelixEngine.dict, yade.wrapper.ThreeDTriaxialEngine.dict, yade.wrapper.JCFpmState.dict, yade.wrapper.Bo1_Tetra_Aabb.dict, yade.wrapper.Law2_ScGeom_MortarPhys_Lourenco.dict, yade.wrapper.Ig2_Sphere_Sphere_L3Geom.dict, yade.wrapper.Box.dict, yade.wrapper.PolyhedraSplitter.dict, yade.wrapper.LinCohesiveStiffPropDampElastMat.dict, yade.wrapper.TimeStepper.dict, yade.wrapper.Gl1_Box.dict, yade.wrapper.Gl1_Tetra.dict, yade.wrapper.TriaxialTest.dict, yade.wrapper.PeriTriaxController.dict, yade.wrapper.InternalForceFunctor.dict, yade.wrapper.AxialGravityEngine.dict, yade.wrapper.Gl1_PolyhedraGeom.dict, yade.wrapper.VTKRecorder.dict, yade.wrapper.Bo1_ChainedCylinder_Aabb.dict, yade.wrapper.Ip2_2xNormalInelasticMat_NormalInelasticityPhys.dict, yade.wrapper.Bound.dict, yade.wrapper.BubbleMat.dict, yade.wrapper.KinematicEngine.dict, yade.wrapper.RotationEngine.dict, yade.wrapper.ResetRandomPosition.dict, yade.wrapper.Ip2_CpmMat_CpmMat_CpmPhys.dict, yade.wrapper.FrictPhys.dict, yade.wrapper.Law2_ScGeom_BubblePhys_Bubble.dict, yade.wrapper.FieldApplier.dict, yade.wrapper.Gl1_CpmPhys.dict, yade.wrapper.PeriodicEngine.dict, yade.wrapper.NormPhys.dict, yade.wrapper.GenericSpheresContact.dict, yade.wrapper.BicyclePedalEngine.dict, yade.wrapper.TTetraSimpleGeom.dict, yade.wrapper.Body.dict, yade.wrapper.WirePhys.dict, yade.wrapper.Gl1_PFacet.dict, yade.wrapper.Interaction.dict, yade.wrapper.DeformableCohesiveElement.dict, yade.wrapper.TTetraGeom.dict, yade.wrapper.CohesiveFrictionalContactLaw.dict, yade.wrapper.Law2_CylScGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.Collider.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_ScGeom.dict, yade.wrapper.Node.dict, yade.wrapper.PeriIsoCompressor.dict, yade.wrapper.LBMnode.dict, yade.wrapper.FrictViscoMat.dict, yade.wrapper.MicroMacroAnalyser.dict, yade.wrapper.Material.dict, yade.wrapper.GlBoundDispatcher.dict, yade.wrapper.Law2_ScGeom_ViscoFrictPhys_CundallStrack.dict, yade.wrapper.GridConnection.dict, yade.wrapper.GlExtra_OctreeCubes.dict, yade.wrapper.Gl1_Cylinder.dict, yade.wrapper.Ip2_ViscElCapMat_ViscElCapMat_ViscElCapPhys.dict, yade.wrapper.Law2_ScGeom_FrictViscoPhys_CundallStrackVisco.dict, yade.wrapper.GlStateDispatcher.dict, yade.wrapper.Shape.dict, yade.wrapper.OpenGLRenderer.dict, yade.wrapper.Ip2_ElastMat_ElastMat_NormShearPhys.dict, yade.wrapper.ChCylGeom6D.dict, yade.wrapper.PolyhedraGeom.dict, yade.wrapper.Ig2_Facet_Polyhedra_PolyhedraGeom.dict, yade.wrapper.NormalInelasticityPhys.dict, yade.wrapper.Ig2_Tetra_Tetra_TTetraSimpleGeom.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom.dict, yade.wrapper.CapillaryPhys.dict, yade.wrapper.LawTester.dict, yade.wrapper.Ig2_Sphere_Sphere_ScGeom.dict, yade.wrapper.ViscoFrictPhys.dict, yade.wrapper.GlobalEngine.dict, yade.wrapper.Gl1_NormPhys.dict, yade.wrapper.Clump.dict, yade.wrapper.IPhysFunctor.dict, yade.wrapper.Cylinder.dict, yade.wrapper.Ig2_GridNode_GridNode_GridNodeGeom6D.dict, yade.wrapper.SnapshotEngine.dict, yade.wrapper.TorqueRecorder.dict, yade.wrapper.ParallelEngine.dict, yade.wrapper.InelastCohFrictPhys.dict, yade.wrapper.Bo1_Box_Aabb.dict, yade.wrapper.FlowEngineT.dict, yade.wrapper.Ip2_ViscElMat_ViscElMat_ViscElPhys.dict, yade.wrapper.PersistentTriangulationCollider.dict, yade.wrapper.Bo1_Wall_Aabb.dict, yade.wrapper.Ig2_Wall_Sphere_L3Geom.dict, yade.wrapper.TriaxialStateRecorder.dict, yade.wrapper.Ig2_Facet_Sphere_ScGeom.dict, yade.wrapper.Law2_ScGeom6D_InelastCohFrictPhys_CohesionMoment.dict, yade.wrapper.Law2_ChCylGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.MortarMat.dict, yade.wrapper.Ig2_Wall_PFacet_ScGeom.dict, yade.wrapper.LudingMat.dict, yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement.dict, yade.wrapper.Gl1_Node.dict, yade.wrapper.Ip2_FrictMat_FrictMat_ViscoFrictPhys.dict, yade.wrapper.ZECollider.dict, yade.wrapper.Ip2_MortarMat_MortarMat_MortarPhys.dict, yade.wrapper.IntrCallback.dict, yade.wrapper.TesselationWrapper.dict, yade.wrapper.StepDisplacer.dict, yade.wrapper.ElasticContactLaw.dict, yade.wrapper.GlShapeDispatcher.dict, yade.wrapper.Ip2_FrictMat_FrictViscoMat_FrictViscoPhys.dict, yade.wrapper.Ip2_JCFpmMat_JCFpmMat_JCFpmPhys.dict, yade.wrapper.Lin4NodeTetra.dict, yade.wrapper.IGeom.dict, yade.wrapper.Ig2_ChainedCylinder_ChainedCylinder_ScGeom6D.dict, yade.wrapper.Dispatcher.dict, yade.wrapper.CombinedKinematicEngine.dict, yade.wrapper.LBMlink.dict, yade.wrapper.Law2_ScGeom_LudingPhys_Basic.dict, yade.wrapper.Ip2_WireMat_WireMat_WirePhys.dict, yade.wrapper.Law2_ScGeom_ViscElCapPhys_Basic.dict, yade.wrapper.SimpleShear.dict, yade.wrapper.Bo1_Sphere_Aabb.dict, yade.wrapper.Engine.dict, yade.wrapper.ScGeom6D.dict, yade.wrapper.LudingPhys.dict, yade.wrapper.LBMbody.dict, yade.wrapper.KinemCNLEngine.dict, yade.wrapper.KinemCNDEngine.dict, yade.wrapper.WireState.dict, yade.wrapper.DragEngine.dict, yade.wrapper.CircularFactory.dict, yade.wrapper.Gl1_Sphere.dict, yade.wrapper.Scene.dict, yade.wrapper.Ip2_ElastMat_ElastMat_NormPhys.dict, yade.wrapper.Gl1_Aabb.dict, yade.wrapper.GlShapeFunctor.dict, yade.wrapper.Ip2_PolyhedraMat_PolyhedraMat_PolyhedraPhys.dict, yade.wrapper.TriaxialStressController.dict, yade.wrapper.ChainedState.dict, yade.wrapper.Law2_GridCoGridCoGeom_FrictPhys_CundallStrack.dict, yade.wrapper.HarmonicMotionEngine.dict, yade.wrapper.Law2_ScGridCoGeom_CohFrictPhys_CundallStrack.dict, yade.wrapper.RadialForceEngine.dict, yade.wrapper.Functor.dict, yade.wrapper.GeneralIntegratorInsertionSortCollider.dict, yade.wrapper.ScGridCoGeom.dict, yade.wrapper.IGeomDispatcher.dict, yade.wrapper.ElastMat.dict, yade.wrapper.Law2_ScGeom_ViscElPhys_Basic.dict, yade.wrapper.MatchMaker.dict, yade.wrapper.ServoPIDController.dict, yade.wrapper.GlIGeomFunctor.dict, yade.wrapper.Law2_CylScGeom_FrictPhys_CundallStrack.dict, yade.wrapper.HdapsGravityEngine.dict, yade.wrapper.CylScGeom6D.dict, yade.wrapper.Ig2_Sphere_GridConnection_ScGridCoGeom.dict, yade.wrapper.Cell.dict, yade.wrapper.JCFpmPhys.dict, yade.wrapper.WireMat.dict, yade.wrapper.Serializable.dict, yade.wrapper.NormShearPhys.dict, yade.wrapper.SpheresFactory.dict, yade.wrapper.Law2_ScGeom_CpmPhys_Cpm.dict, yade.wrapper.Bo1_Facet_Aabb.dict, yade.wrapper.GravityEngine.dict, yade.wrapper.Ip2_FrictViscoMat_FrictViscoMat_FrictViscoPhys.dict, yade.wrapper.KinemCTDEngine.dict, yade.wrapper.BubblePhys.dict, yade.wrapper.Ip2_FrictMat_FrictMat_MindlinPhys.dict, yade.wrapper.BoundDispatcher.dict, yade.wrapper.InterpolatingHelixEngine.dict, yade.wrapper.Law2_ScGeom_FrictPhys_CundallStrack.dict, yade.wrapper.Bo1_GridConnection_Aabb.dict, yade.wrapper.Ip2_BubbleMat_BubbleMat_BubblePhys.dict, yade.wrapper.BoundFunctor.dict, yade.wrapper.Bo1_Cylinder_Aabb.dict, yade.wrapper.Law2_TTetraSimpleGeom_NormPhys_Simple.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_PolyhedraGeomOrScGeom.dict, yade.wrapper.Integrator.dict, yade.wrapper.MindlinCapillaryPhys.dict, yade.wrapper.Gl1_Polyhedra.dict, yade.wrapper.IPhysDispatcher.dict, yade.wrapper.Ip2_FrictMat_FrictMat_FrictPhys.dict, yade.wrapper.If2_2xLin4NodeTetra_LinCohesiveStiffPropDampElastMat.dict, yade.wrapper.NormalInelasticMat.dict, yade.wrapper.FacetTopologyAnalyzer.dict, yade.wrapper.GlIPhysFunctor.dict, yade.wrapper.Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.dict, yade.wrapper.SpatialQuickSortCollider.dict, yade.wrapper.Gl1_L3Geom.dict, yade.wrapper.PeriodicFlowEngine.dict, yade.wrapper.Law2_L3Geom_FrictPhys_ElPerfPl.dict, yade.wrapper.TriaxialCompressionEngine.dict, yade.wrapper.Disp2DPropLoadEngine.dict, yade.wrapper.JCFpmMat.dict, yade.wrapper.PolyhedraMat.dict, yade.wrapper.RungeKuttaCashKarp54Integrator.dict, yade.wrapper.GlStateFunctor.dict, yade.wrapper.Bo1_DeformableElement_Aabb.dict, yade.wrapper.BoundaryController.dict, yade.wrapper.TranslationEngine.dict, yade.wrapper.InelastCohFrictMat.dict, yade.wrapper.Law2_ScGridCoGeom_FrictPhys_CundallStrack.dict, yade.wrapper.DeformableElementMaterial.dict, yade.wrapper.GlIGeomDispatcher.dict, yade.wrapper.TorqueEngine.dict, yade.wrapper.FrictViscoPhys.dict, yade.wrapper.Recorder.dict, yade.wrapper.ChainedCylinder.dict, yade.wrapper.Polyhedra.dict, yade.wrapper.Ig2_Tetra_Tetra_TTetraGeom.dict, yade.wrapper.FEInternalForceEngine.dict, yade.wrapper.Ip2_FrictMat_PolyhedraMat_FrictPhys.dict, yade.wrapper.Gl1_Wall.dict, yade.wrapper.CpmMat.dict, yade.wrapper.LawFunctor.dict, yade.wrapper.CpmState.dict, yade.wrapper.Sphere.dict, yade.wrapper.LinCohesiveElasticMaterial.dict, yade.wrapper.Gl1_L6Geom.dict, yade.wrapper.LinIsoRayleighDampElastMat.dict, yade.wrapper.BoxFactory.dict, yade.wrapper.Law2_ScGeom_CapillaryPhys_Capillarity.dict, yade.wrapper.Ig2_Wall_Polyhedra_PolyhedraGeom.dict, yade.wrapper.FlowEngine.dict, yade.wrapper.Wall.dict, yade.wrapper.PolyhedraPhys.dict, yade.wrapper.Gl1_DeformableElement.dict, yade.wrapper.Ig2_Facet_Sphere_ScGeom6D.dict, yade.wrapper.InteractionLoop.dict, yade.wrapper.Ig2_Sphere_PFacet_ScGridCoGeom.dict, yade.wrapper.CapillaryTriaxialTest.dict, yade.wrapper.MortarPhys.dict, yade.wrapper.Gl1_Facet.dict, yade.wrapper.PyRunner.dict, yade.wrapper.Ig2_Sphere_Sphere_ScGeom6D.dict, yade.wrapper.CentralGravityEngine.dict, yade.wrapper.UniaxialStrainer.dict, yade.wrapper.FrictMat.dict, yade.wrapper.CylScGeom.dict, yade.wrapper.GlExtra_LawTester.dict, yade.wrapper.Law2_ScGeom_WirePhys_WirePM.dict, yade.wrapper.InternalForceDispatcher.dict, yade.wrapper.Ig2_Sphere_Sphere_L6Geom.dict, yade.wrapper.Law2_PolyhedraGeom_PolyhedraPhys_Volumetric.dict, yade.wrapper.GridNode.dict, yade.wrapper.FileGenerator.dict, yade.wrapper.Ig2_Sphere_ChainedCylinder_CylScGeom6D.dict, yade.wrapper.Ig2_PFacet_PFacet_ScGeom.dict, yade.wrapper.CpmPhys.dict, yade.wrapper.Ig2_Facet_Sphere_L3Geom.dict, yade.wrapper.ForceResetter.dict, yade.wrapper.Ip2_FrictMat_FrictMat_CapillaryPhys.dict, yade.wrapper.ViscElPhys.dict, yade.wrapper.EnergyTracker.dict, yade.wrapper.Ig2_Sphere_ChainedCylinder_CylScGeom.dict, yade.wrapper.Ig2_GridConnection_GridConnection_GridCoGridCoGeom.dict, yade.wrapper.Aabb.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_MindlinDeresiewitz.dict, yade.wrapper.GlBoundFunctor.dict, yade.wrapper.State.dict, yade.wrapper.ScGeom.dict, yade.wrapper.Peri3dController.dict, yade.wrapper.InterpolatingDirectedForceEngine.dict, yade.wrapper.ForceRecorder.dict, yade.wrapper.Ig2_GridConnection_PFacet_ScGeom.dict, yade.wrapper.PartialEngine.dict, yade.wrapper.ViscElCapPhys.dict, yade.wrapper.L3Geom.dict, yade.wrapper.FlatGridCollider.dict, yade.wrapper.DeformableElement.dict, yade.wrapper.Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.dict, yade.wrapper.Ip2_LudingMat_LudingMat_LudingPhys.dict, yade.wrapper.LinIsoElastMat.dict, yade.wrapper.HarmonicRotationEngine.dict, yade.wrapper.Law2_ScGeom6D_NormalInelasticityPhys_NormalInelasticity.dict, yade.wrapper.ForceEngine.dict, yade.wrapper.Bo1_Node_Aabb.dict, yade.wrapper.Ig2_Sphere_Polyhedra_ScGeom.dict, yade.wrapper.IGeomFunctor.dict, yade.wrapper.Ig2_Wall_Sphere_ScGeom.dict, yade.wrapper.DomainLimiter.dict, yade.wrapper.Gl1_ChainedCylinder.dict, yade.wrapper.If2_Lin4NodeTetra_LinIsoRayleighDampElast.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_PolyhedraGeom.dict, yade.wrapper.GlExtraDrawer.dict, yade.wrapper.HydroForceEngine.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_Mindlin.dict
docstring of yade.wrapper.Ip2_JCFpmMat_JCFpmMat_JCFpmPhys:1: WARNING: citation not found: Duriez2016
generating indices... genindex py-modindex
highlighting module code... [ 10%] Law2_ScGeom6D_InelastCohFrictPhys_CohesionMomhighlighting module code... [100%] yade._packSpheres
writing additional pages... index search
copying images... [100%] fig/simple-scene-plot-3.png
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 16 warnings.
Running Sphinx v1.3.6
WARNING: the config value 'my_maketitle' is set to a string with non-ASCII characters; this can lead to Unicode errors occurring. Please use Unicode strings, e.g. u'Content'.
WARNING: extension 'youtube' has no setup() function; is it really a Sphinx extension module?
building [mo]: all of 0 po files
building [latex]: all source files
updating environment: 39 added, 0 changed, 0 removed
reading sources... [ 33%] introduction
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 321
Specify :okexcept: as an option in the ipython:: block to suppress this message
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IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.bodies[100]
IndexError: Body id out of range.
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 327
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.bodies.append(s)
IndexError: Body already has id 0 set; appending such body (for the second time) is not allowed.
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 382
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.interactions[100,10111]
IndexError: No such interaction
<<<-------------------------------------------------------------------------
reading sources... [ 38%] prog
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 434
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 Sphere().name ## getClassName()
AttributeError: 'Sphere' object has no attribute 'name'
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 1466
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.forces.f(100)
IndexError: Body id out of range.
<<<-------------------------------------------------------------------------
reading sources... [ 58%] tutorial-hands-on
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/tutorial-hands-on.rst at block ending on line 197
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 a[3] # error
IndexError: list index out of range
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/tutorial-hands-on.rst at block ending on line 226
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 b[0]=4 # error
TypeError: 'tuple' object does not support item assignment
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/tutorial-hands-on.rst at block ending on line 383
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.bodies[1].shape.radius # radius of body #1 (will give error if not sphere, since only spheres have radius defined)
AttributeError: 'NoneType' object has no attribute 'shape'
<<<-------------------------------------------------------------------------
ERROR /home/hjz/yade2017/trunk/pkg/common/InsertionSortCollider.cpp:240 action: verletDist is set to 0 because no spheres were found. It will result in suboptimal performances, consider setting a positive verletDist in your script.
reading sources... [100%] yade.ymport
/home/hjz/yade2017/build/doc/sphinx/index-toctree-manuals.rst:6: WARNING: toctree contains reference to nonexisting document u'fullPublications'
/home/hjz/yade2017/build/doc/sphinx/index-toctree-reference.rst:5: WARNING: toctree contains reference to nonexisting document u'fullPublications'
/home/hjz/yade2017/build/doc/sphinx/index-toctree-theory.rst:5: WARNING: toctree contains reference to nonexisting document u'fullPublications'
/home/hjz/yade2017/build/doc/sphinx/publications.rst:127: WARNING: Inline emphasis start-string without end-string.
/home/hjz/yade2017/build/doc/sphinx/publications.rst:429: WARNING: Duplicate explicit target name: "maurin2015".
/home/hjz/yade2017/build/doc/sphinx/publications.rst:429: WARNING: duplicate citation Maurin2015, other instance in /home/hjz/yade2017/build/doc/sphinx/publications.rst
/home/hjz/yade2017/build/doc/sphinx/yade.wrapper.rst:1: WARNING: malformed hyperlink target.
looking for now-outdated files... none found
pickling environment... done
checking consistency... /home/hjz/yade2017/build/doc/sphinx/consulting.rst:: WARNING: document isn't included in any toctree
/home/hjz/yade2017/build/doc/sphinx/index-toctree-book.rst:: WARNING: document isn't included in any toctree
/home/hjz/yade2017/build/doc/sphinx/index-toctree_manuals.rst:: WARNING: document isn't included in any toctree
done
processing Yade.tex... index-toctree introduction tutorial tutorial-introduction tutorial-hands-on tutorial-data-mining tutorial-geo tutorial-advanced tutorial-examples user prog installation github formulation yade.wrapper modules yade.bodiesHandling yade.export yade.geom yade.gridpfacet yade.linterpolation yade.pack yade.plot yade.polyhedra_utils yade.post2d yade.qt yade.timing yade.utils yade.ymport FEMxDEM citing publications references
resolving references...
docstring of yade.wrapper.Ip2_JCFpmMat_JCFpmMat_JCFpmPhys:1: WARNING: citation not found: Duriez2016
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/utils.py:docstring of yade.utils.UnstructuredGrid:None: WARNING: more than one target found for cross-reference u'dict': yade.wrapper.Facet.dict, yade.wrapper.InsertionSortCollider.dict, yade.wrapper.ViscElCapMat.dict, yade.wrapper.LinearDragEngine.dict, yade.wrapper.Law2_ScGeom_JCFpmPhys_JointedCohesiveFrictionalPM.dict, yade.wrapper.CapillaryStressRecorder.dict, yade.wrapper.PFacet.dict, yade.wrapper.LawDispatcher.dict, yade.wrapper.FlowEngine_PeriodicInfo.dict, yade.wrapper.GridCoGridCoGeom.dict, yade.wrapper.CohesiveTriaxialTest.dict, yade.wrapper.NewtonIntegrator.dict, yade.wrapper.ViscElMat.dict, yade.wrapper.HydrodynamicsLawLBM.dict, yade.wrapper.CohFrictPhys.dict, yade.wrapper.Bo1_Polyhedra_Aabb.dict, yade.wrapper.IPhys.dict, yade.wrapper.GlobalStiffnessTimeStepper.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom6D.dict, yade.wrapper.Ip2_FrictMat_CpmMat_FrictPhys.dict, yade.wrapper.TetraVolumetricLaw.dict, yade.wrapper.KinemCNSEngine.dict, yade.wrapper.Gl1_GridConnection.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_HertzWithLinearShear.dict, yade.wrapper.GridNodeGeom6D.dict, yade.wrapper.CohesiveDeformableElementMaterial.dict, yade.wrapper.KinemSimpleShearBox.dict, yade.wrapper.Law2_L6Geom_FrictPhys_Linear.dict, yade.wrapper.L6Geom.dict, yade.wrapper.GlIPhysDispatcher.dict, yade.wrapper.CohFrictMat.dict, yade.wrapper.Bo1_PFacet_Aabb.dict, yade.wrapper.SumIntrForcesCb.dict, yade.wrapper.MindlinPhys.dict, yade.wrapper.Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.dict, yade.wrapper.CpmStateUpdater.dict, yade.wrapper.Tetra.dict, yade.wrapper.Gl1_PolyhedraPhys.dict, yade.wrapper.ThreeDTriaxialEngine.dict, yade.wrapper.JCFpmState.dict, yade.wrapper.Bo1_Tetra_Aabb.dict, yade.wrapper.RungeKuttaCashKarp54Integrator.dict, yade.wrapper.Law2_ScGeom_MortarPhys_Lourenco.dict, yade.wrapper.Ig2_Sphere_Sphere_L3Geom.dict, yade.wrapper.Box.dict, yade.wrapper.PolyhedraSplitter.dict, yade.wrapper.LinCohesiveStiffPropDampElastMat.dict, yade.wrapper.TimeStepper.dict, yade.wrapper.Gl1_Box.dict, yade.wrapper.ForceResetter.dict, yade.wrapper.Gl1_Tetra.dict, yade.wrapper.TriaxialTest.dict, yade.wrapper.PeriTriaxController.dict, yade.wrapper.PeriodicEngine.dict, yade.wrapper.InternalForceFunctor.dict, yade.wrapper.Gl1_PolyhedraGeom.dict, yade.wrapper.VTKRecorder.dict, yade.wrapper.Bo1_ChainedCylinder_Aabb.dict, yade.wrapper.Ip2_2xNormalInelasticMat_NormalInelasticityPhys.dict, yade.wrapper.Bound.dict, yade.wrapper.BubbleMat.dict, yade.wrapper.KinematicEngine.dict, yade.wrapper.RotationEngine.dict, yade.wrapper.ResetRandomPosition.dict, yade.wrapper.Law2_ScGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.Law2_CylScGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.FrictPhys.dict, yade.wrapper.Law2_ScGeom_BubblePhys_Bubble.dict, yade.wrapper.Gl1_CpmPhys.dict, yade.wrapper.GlobalEngine.dict, yade.wrapper.AxialGravityEngine.dict, yade.wrapper.NormPhys.dict, yade.wrapper.GenericSpheresContact.dict, yade.wrapper.BicyclePedalEngine.dict, yade.wrapper.TTetraSimpleGeom.dict, yade.wrapper.Body.dict, yade.wrapper.WirePhys.dict, yade.wrapper.Gl1_PFacet.dict, yade.wrapper.Interaction.dict, yade.wrapper.DeformableCohesiveElement.dict, yade.wrapper.TTetraGeom.dict, yade.wrapper.CohesiveFrictionalContactLaw.dict, yade.wrapper.Collider.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_ScGeom.dict, yade.wrapper.Ip2_ViscElMat_ViscElMat_ViscElPhys.dict, yade.wrapper.Node.dict, yade.wrapper.PeriIsoCompressor.dict, yade.wrapper.LBMnode.dict, yade.wrapper.FrictViscoMat.dict, yade.wrapper.MicroMacroAnalyser.dict, yade.wrapper.Material.dict, yade.wrapper.GlBoundDispatcher.dict, yade.wrapper.Law2_ScGeom_ViscoFrictPhys_CundallStrack.dict, yade.wrapper.GridConnection.dict, yade.wrapper.GlExtra_OctreeCubes.dict, yade.wrapper.Gl1_Cylinder.dict, yade.wrapper.Ip2_ViscElCapMat_ViscElCapMat_ViscElCapPhys.dict, yade.wrapper.Law2_ScGeom_FrictViscoPhys_CundallStrackVisco.dict, yade.wrapper.GlStateDispatcher.dict, yade.wrapper.Shape.dict, yade.wrapper.OpenGLRenderer.dict, yade.wrapper.Ip2_ElastMat_ElastMat_NormShearPhys.dict, yade.wrapper.ChCylGeom6D.dict, yade.wrapper.PolyhedraGeom.dict, yade.wrapper.Ig2_Facet_Polyhedra_PolyhedraGeom.dict, yade.wrapper.NormalInelasticityPhys.dict, yade.wrapper.Ig2_Tetra_Tetra_TTetraSimpleGeom.dict, yade.wrapper.HelixEngine.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom.dict, yade.wrapper.CapillaryPhys.dict, yade.wrapper.LawTester.dict, yade.wrapper.Ig2_Sphere_Sphere_ScGeom.dict, yade.wrapper.ViscoFrictPhys.dict, yade.wrapper.Gl1_NormPhys.dict, yade.wrapper.Clump.dict, yade.wrapper.IPhysFunctor.dict, yade.wrapper.Ig2_Sphere_ChainedCylinder_CylScGeom.dict, yade.wrapper.Cylinder.dict, yade.wrapper.Ig2_GridNode_GridNode_GridNodeGeom6D.dict, yade.wrapper.SnapshotEngine.dict, yade.wrapper.TorqueRecorder.dict, yade.wrapper.ParallelEngine.dict, yade.wrapper.InelastCohFrictPhys.dict, yade.wrapper.Bo1_Box_Aabb.dict, yade.wrapper.FlowEngineT.dict, yade.wrapper.WireMat.dict, yade.wrapper.PersistentTriangulationCollider.dict, yade.wrapper.Integrator.dict, yade.wrapper.Bo1_Wall_Aabb.dict, yade.wrapper.TriaxialStateRecorder.dict, yade.wrapper.Ig2_Facet_Sphere_ScGeom.dict, yade.wrapper.Law2_ScGeom6D_InelastCohFrictPhys_CohesionMoment.dict, yade.wrapper.Law2_ChCylGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.MortarMat.dict, yade.wrapper.Ig2_Wall_PFacet_ScGeom.dict, yade.wrapper.LudingMat.dict, yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement.dict, yade.wrapper.Gl1_Node.dict, yade.wrapper.Ip2_FrictMat_FrictMat_ViscoFrictPhys.dict, yade.wrapper.Ip2_MortarMat_MortarMat_MortarPhys.dict, yade.wrapper.IntrCallback.dict, yade.wrapper.TesselationWrapper.dict, yade.wrapper.StepDisplacer.dict, yade.wrapper.ElasticContactLaw.dict, yade.wrapper.GlShapeDispatcher.dict, yade.wrapper.Ip2_FrictMat_FrictViscoMat_FrictViscoPhys.dict, yade.wrapper.Ip2_JCFpmMat_JCFpmMat_JCFpmPhys.dict, yade.wrapper.Lin4NodeTetra.dict, yade.wrapper.IGeom.dict, yade.wrapper.Ig2_ChainedCylinder_ChainedCylinder_ScGeom6D.dict, yade.wrapper.Dispatcher.dict, yade.wrapper.CombinedKinematicEngine.dict, yade.wrapper.LBMlink.dict, yade.wrapper.Law2_ScGeom_LudingPhys_Basic.dict, yade.wrapper.Ip2_WireMat_WireMat_WirePhys.dict, yade.wrapper.Law2_ScGeom_ViscElCapPhys_Basic.dict, yade.wrapper.SimpleShear.dict, yade.wrapper.Bo1_Sphere_Aabb.dict, yade.wrapper.Engine.dict, yade.wrapper.ScGeom6D.dict, yade.wrapper.LudingPhys.dict, yade.wrapper.LBMbody.dict, yade.wrapper.KinemCNLEngine.dict, yade.wrapper.KinemCNDEngine.dict, yade.wrapper.WireState.dict, yade.wrapper.DragEngine.dict, yade.wrapper.CircularFactory.dict, yade.wrapper.Gl1_Sphere.dict, yade.wrapper.Scene.dict, yade.wrapper.Ip2_ElastMat_ElastMat_NormPhys.dict, yade.wrapper.Gl1_Aabb.dict, yade.wrapper.GlShapeFunctor.dict, yade.wrapper.Ip2_PolyhedraMat_PolyhedraMat_PolyhedraPhys.dict, yade.wrapper.TriaxialStressController.dict, yade.wrapper.Ig2_Wall_Sphere_L3Geom.dict, yade.wrapper.ChainedState.dict, yade.wrapper.Law2_GridCoGridCoGeom_FrictPhys_CundallStrack.dict, yade.wrapper.HarmonicMotionEngine.dict, yade.wrapper.Law2_ScGridCoGeom_CohFrictPhys_CundallStrack.dict, yade.wrapper.RadialForceEngine.dict, yade.wrapper.Functor.dict, yade.wrapper.GeneralIntegratorInsertionSortCollider.dict, yade.wrapper.ScGridCoGeom.dict, yade.wrapper.IGeomDispatcher.dict, yade.wrapper.ElastMat.dict, yade.wrapper.Law2_ScGeom_ViscElPhys_Basic.dict, yade.wrapper.MatchMaker.dict, yade.wrapper.ServoPIDController.dict, yade.wrapper.GlIGeomFunctor.dict, yade.wrapper.L3Geom.dict, yade.wrapper.Law2_CylScGeom_FrictPhys_CundallStrack.dict, yade.wrapper.HdapsGravityEngine.dict, yade.wrapper.CylScGeom6D.dict, yade.wrapper.Ig2_Sphere_GridConnection_ScGridCoGeom.dict, yade.wrapper.Cell.dict, yade.wrapper.JCFpmPhys.dict, yade.wrapper.NormShearPhys.dict, yade.wrapper.SpheresFactory.dict, yade.wrapper.Law2_ScGeom_CpmPhys_Cpm.dict, yade.wrapper.Bo1_Facet_Aabb.dict, yade.wrapper.GravityEngine.dict, yade.wrapper.Ip2_FrictViscoMat_FrictViscoMat_FrictViscoPhys.dict, yade.wrapper.KinemCTDEngine.dict, yade.wrapper.BubblePhys.dict, yade.wrapper.Ip2_FrictMat_FrictMat_MindlinPhys.dict, yade.wrapper.BoundDispatcher.dict, yade.wrapper.InterpolatingHelixEngine.dict, yade.wrapper.Law2_ScGeom_FrictPhys_CundallStrack.dict, yade.wrapper.Bo1_GridConnection_Aabb.dict, yade.wrapper.Ip2_BubbleMat_BubbleMat_BubblePhys.dict, yade.wrapper.BoundFunctor.dict, yade.wrapper.Bo1_Cylinder_Aabb.dict, yade.wrapper.Law2_TTetraSimpleGeom_NormPhys_Simple.dict, yade.wrapper.MindlinCapillaryPhys.dict, yade.wrapper.Gl1_Polyhedra.dict, yade.wrapper.IPhysDispatcher.dict, yade.wrapper.Ip2_FrictMat_FrictMat_FrictPhys.dict, yade.wrapper.If2_2xLin4NodeTetra_LinCohesiveStiffPropDampElastMat.dict, yade.wrapper.NormalInelasticMat.dict, yade.wrapper.FacetTopologyAnalyzer.dict, yade.wrapper.GlIPhysFunctor.dict, yade.wrapper.Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.dict, yade.wrapper.SpatialQuickSortCollider.dict, yade.wrapper.Gl1_L3Geom.dict, yade.wrapper.PeriodicFlowEngine.dict, yade.wrapper.Ip2_CpmMat_CpmMat_CpmPhys.dict, yade.wrapper.Law2_L3Geom_FrictPhys_ElPerfPl.dict, yade.wrapper.TriaxialCompressionEngine.dict, yade.wrapper.Disp2DPropLoadEngine.dict, yade.wrapper.JCFpmMat.dict, yade.wrapper.PolyhedraMat.dict, yade.wrapper.Serializable.dict, yade.wrapper.GlStateFunctor.dict, yade.wrapper.Bo1_DeformableElement_Aabb.dict, yade.wrapper.BoundaryController.dict, yade.wrapper.TranslationEngine.dict, yade.wrapper.InelastCohFrictMat.dict, yade.wrapper.Law2_ScGridCoGeom_FrictPhys_CundallStrack.dict, yade.wrapper.DeformableElementMaterial.dict, yade.wrapper.GlIGeomDispatcher.dict, yade.wrapper.ZECollider.dict, yade.wrapper.TorqueEngine.dict, yade.wrapper.FrictViscoPhys.dict, yade.wrapper.Recorder.dict, yade.wrapper.ChainedCylinder.dict, yade.wrapper.Polyhedra.dict, yade.wrapper.ForceEngine.dict, yade.wrapper.Ig2_Tetra_Tetra_TTetraGeom.dict, yade.wrapper.FEInternalForceEngine.dict, yade.wrapper.Ip2_FrictMat_PolyhedraMat_FrictPhys.dict, yade.wrapper.Gl1_Wall.dict, yade.wrapper.LawFunctor.dict, yade.wrapper.CpmState.dict, yade.wrapper.Sphere.dict, yade.wrapper.Bo1_Node_Aabb.dict, yade.wrapper.LinCohesiveElasticMaterial.dict, yade.wrapper.Gl1_L6Geom.dict, yade.wrapper.LinIsoRayleighDampElastMat.dict, yade.wrapper.BoxFactory.dict, yade.wrapper.Law2_ScGeom_CapillaryPhys_Capillarity.dict, yade.wrapper.CpmMat.dict, yade.wrapper.Ig2_Wall_Polyhedra_PolyhedraGeom.dict, yade.wrapper.FlowEngine.dict, yade.wrapper.Wall.dict, yade.wrapper.PolyhedraPhys.dict, yade.wrapper.Gl1_DeformableElement.dict, yade.wrapper.Ig2_Facet_Sphere_ScGeom6D.dict, yade.wrapper.InteractionLoop.dict, yade.wrapper.Ig2_Sphere_PFacet_ScGridCoGeom.dict, yade.wrapper.Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.dict, yade.wrapper.MortarPhys.dict, yade.wrapper.Gl1_Facet.dict, yade.wrapper.PyRunner.dict, yade.wrapper.Ig2_Sphere_Sphere_ScGeom6D.dict, yade.wrapper.CentralGravityEngine.dict, yade.wrapper.UniaxialStrainer.dict, yade.wrapper.FrictMat.dict, yade.wrapper.CylScGeom.dict, yade.wrapper.GlExtra_LawTester.dict, yade.wrapper.Law2_ScGeom_WirePhys_WirePM.dict, yade.wrapper.InternalForceDispatcher.dict, yade.wrapper.Ig2_Sphere_Sphere_L6Geom.dict, yade.wrapper.Law2_PolyhedraGeom_PolyhedraPhys_Volumetric.dict, yade.wrapper.GridNode.dict, yade.wrapper.FileGenerator.dict, yade.wrapper.Ig2_Sphere_ChainedCylinder_CylScGeom6D.dict, yade.wrapper.Ig2_PFacet_PFacet_ScGeom.dict, yade.wrapper.CpmPhys.dict, yade.wrapper.Ig2_Facet_Sphere_L3Geom.dict, yade.wrapper.Ip2_FrictMat_FrictMat_CapillaryPhys.dict, yade.wrapper.ViscElPhys.dict, yade.wrapper.EnergyTracker.dict, yade.wrapper.Ig2_GridConnection_GridConnection_GridCoGridCoGeom.dict, yade.wrapper.Aabb.dict, yade.wrapper.FieldApplier.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_MindlinDeresiewitz.dict, yade.wrapper.GlBoundFunctor.dict, yade.wrapper.State.dict, yade.wrapper.ScGeom.dict, yade.wrapper.Peri3dController.dict, yade.wrapper.InterpolatingDirectedForceEngine.dict, yade.wrapper.ForceRecorder.dict, yade.wrapper.Ig2_GridConnection_PFacet_ScGeom.dict, yade.wrapper.PartialEngine.dict, yade.wrapper.ViscElCapPhys.dict, yade.wrapper.FlatGridCollider.dict, yade.wrapper.DeformableElement.dict, yade.wrapper.CapillaryTriaxialTest.dict, yade.wrapper.Ip2_LudingMat_LudingMat_LudingPhys.dict, yade.wrapper.LinIsoElastMat.dict, yade.wrapper.HarmonicRotationEngine.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_PolyhedraGeomOrScGeom.dict, yade.wrapper.Law2_ScGeom6D_NormalInelasticityPhys_NormalInelasticity.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_Mindlin.dict, yade.wrapper.Ig2_Sphere_Polyhedra_ScGeom.dict, yade.wrapper.IGeomFunctor.dict, yade.wrapper.Ig2_Wall_Sphere_ScGeom.dict, yade.wrapper.DomainLimiter.dict, yade.wrapper.Gl1_ChainedCylinder.dict, yade.wrapper.If2_Lin4NodeTetra_LinIsoRayleighDampElast.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_PolyhedraGeom.dict, yade.wrapper.GlExtraDrawer.dict, yade.wrapper.HydroForceEngine.dict
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/utils.py:docstring of yade.utils.UnstructuredGrid:None: WARNING: more than one target found for cross-reference u'dict': yade.wrapper.Facet.dict, yade.wrapper.InsertionSortCollider.dict, yade.wrapper.ViscElCapMat.dict, yade.wrapper.LinearDragEngine.dict, yade.wrapper.Law2_ScGeom_JCFpmPhys_JointedCohesiveFrictionalPM.dict, yade.wrapper.CapillaryStressRecorder.dict, yade.wrapper.PFacet.dict, yade.wrapper.LawDispatcher.dict, yade.wrapper.FlowEngine_PeriodicInfo.dict, yade.wrapper.GridCoGridCoGeom.dict, yade.wrapper.CohesiveTriaxialTest.dict, yade.wrapper.NewtonIntegrator.dict, yade.wrapper.ViscElMat.dict, yade.wrapper.HydrodynamicsLawLBM.dict, yade.wrapper.CohFrictPhys.dict, yade.wrapper.Bo1_Polyhedra_Aabb.dict, yade.wrapper.IPhys.dict, yade.wrapper.GlobalStiffnessTimeStepper.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom6D.dict, yade.wrapper.Ip2_FrictMat_CpmMat_FrictPhys.dict, yade.wrapper.TetraVolumetricLaw.dict, yade.wrapper.KinemCNSEngine.dict, yade.wrapper.Gl1_GridConnection.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_HertzWithLinearShear.dict, yade.wrapper.GridNodeGeom6D.dict, yade.wrapper.CohesiveDeformableElementMaterial.dict, yade.wrapper.KinemSimpleShearBox.dict, yade.wrapper.Law2_L6Geom_FrictPhys_Linear.dict, yade.wrapper.L6Geom.dict, yade.wrapper.GlIPhysDispatcher.dict, yade.wrapper.CohFrictMat.dict, yade.wrapper.Bo1_PFacet_Aabb.dict, yade.wrapper.SumIntrForcesCb.dict, yade.wrapper.MindlinPhys.dict, yade.wrapper.Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.dict, yade.wrapper.CpmStateUpdater.dict, yade.wrapper.Tetra.dict, yade.wrapper.Gl1_PolyhedraPhys.dict, yade.wrapper.ThreeDTriaxialEngine.dict, yade.wrapper.JCFpmState.dict, yade.wrapper.Bo1_Tetra_Aabb.dict, yade.wrapper.RungeKuttaCashKarp54Integrator.dict, yade.wrapper.Law2_ScGeom_MortarPhys_Lourenco.dict, yade.wrapper.Ig2_Sphere_Sphere_L3Geom.dict, yade.wrapper.Box.dict, yade.wrapper.PolyhedraSplitter.dict, yade.wrapper.LinCohesiveStiffPropDampElastMat.dict, yade.wrapper.TimeStepper.dict, yade.wrapper.Gl1_Box.dict, yade.wrapper.ForceResetter.dict, yade.wrapper.Gl1_Tetra.dict, yade.wrapper.TriaxialTest.dict, yade.wrapper.PeriTriaxController.dict, yade.wrapper.PeriodicEngine.dict, yade.wrapper.InternalForceFunctor.dict, yade.wrapper.Gl1_PolyhedraGeom.dict, yade.wrapper.VTKRecorder.dict, yade.wrapper.Bo1_ChainedCylinder_Aabb.dict, yade.wrapper.Ip2_2xNormalInelasticMat_NormalInelasticityPhys.dict, yade.wrapper.Bound.dict, yade.wrapper.BubbleMat.dict, yade.wrapper.KinematicEngine.dict, yade.wrapper.RotationEngine.dict, yade.wrapper.ResetRandomPosition.dict, yade.wrapper.Law2_ScGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.Law2_CylScGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.FrictPhys.dict, yade.wrapper.Law2_ScGeom_BubblePhys_Bubble.dict, yade.wrapper.Gl1_CpmPhys.dict, yade.wrapper.GlobalEngine.dict, yade.wrapper.AxialGravityEngine.dict, yade.wrapper.NormPhys.dict, yade.wrapper.GenericSpheresContact.dict, yade.wrapper.BicyclePedalEngine.dict, yade.wrapper.TTetraSimpleGeom.dict, yade.wrapper.Body.dict, yade.wrapper.WirePhys.dict, yade.wrapper.Gl1_PFacet.dict, yade.wrapper.Interaction.dict, yade.wrapper.DeformableCohesiveElement.dict, yade.wrapper.TTetraGeom.dict, yade.wrapper.CohesiveFrictionalContactLaw.dict, yade.wrapper.Collider.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_ScGeom.dict, yade.wrapper.Ip2_ViscElMat_ViscElMat_ViscElPhys.dict, yade.wrapper.Node.dict, yade.wrapper.PeriIsoCompressor.dict, yade.wrapper.LBMnode.dict, yade.wrapper.FrictViscoMat.dict, yade.wrapper.MicroMacroAnalyser.dict, yade.wrapper.Material.dict, yade.wrapper.GlBoundDispatcher.dict, yade.wrapper.Law2_ScGeom_ViscoFrictPhys_CundallStrack.dict, yade.wrapper.GridConnection.dict, yade.wrapper.GlExtra_OctreeCubes.dict, yade.wrapper.Gl1_Cylinder.dict, yade.wrapper.Ip2_ViscElCapMat_ViscElCapMat_ViscElCapPhys.dict, yade.wrapper.Law2_ScGeom_FrictViscoPhys_CundallStrackVisco.dict, yade.wrapper.GlStateDispatcher.dict, yade.wrapper.Shape.dict, yade.wrapper.OpenGLRenderer.dict, yade.wrapper.Ip2_ElastMat_ElastMat_NormShearPhys.dict, yade.wrapper.ChCylGeom6D.dict, yade.wrapper.PolyhedraGeom.dict, yade.wrapper.Ig2_Facet_Polyhedra_PolyhedraGeom.dict, yade.wrapper.NormalInelasticityPhys.dict, yade.wrapper.Ig2_Tetra_Tetra_TTetraSimpleGeom.dict, yade.wrapper.HelixEngine.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom.dict, yade.wrapper.CapillaryPhys.dict, yade.wrapper.LawTester.dict, yade.wrapper.Ig2_Sphere_Sphere_ScGeom.dict, yade.wrapper.ViscoFrictPhys.dict, yade.wrapper.Gl1_NormPhys.dict, yade.wrapper.Clump.dict, yade.wrapper.IPhysFunctor.dict, yade.wrapper.Ig2_Sphere_ChainedCylinder_CylScGeom.dict, yade.wrapper.Cylinder.dict, yade.wrapper.Ig2_GridNode_GridNode_GridNodeGeom6D.dict, yade.wrapper.SnapshotEngine.dict, yade.wrapper.TorqueRecorder.dict, yade.wrapper.ParallelEngine.dict, yade.wrapper.InelastCohFrictPhys.dict, yade.wrapper.Bo1_Box_Aabb.dict, yade.wrapper.FlowEngineT.dict, yade.wrapper.WireMat.dict, yade.wrapper.PersistentTriangulationCollider.dict, yade.wrapper.Integrator.dict, yade.wrapper.Bo1_Wall_Aabb.dict, yade.wrapper.TriaxialStateRecorder.dict, yade.wrapper.Ig2_Facet_Sphere_ScGeom.dict, yade.wrapper.Law2_ScGeom6D_InelastCohFrictPhys_CohesionMoment.dict, yade.wrapper.Law2_ChCylGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.MortarMat.dict, yade.wrapper.Ig2_Wall_PFacet_ScGeom.dict, yade.wrapper.LudingMat.dict, yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement.dict, yade.wrapper.Gl1_Node.dict, yade.wrapper.Ip2_FrictMat_FrictMat_ViscoFrictPhys.dict, yade.wrapper.Ip2_MortarMat_MortarMat_MortarPhys.dict, yade.wrapper.IntrCallback.dict, yade.wrapper.TesselationWrapper.dict, yade.wrapper.StepDisplacer.dict, yade.wrapper.ElasticContactLaw.dict, yade.wrapper.GlShapeDispatcher.dict, yade.wrapper.Ip2_FrictMat_FrictViscoMat_FrictViscoPhys.dict, yade.wrapper.Ip2_JCFpmMat_JCFpmMat_JCFpmPhys.dict, yade.wrapper.Lin4NodeTetra.dict, yade.wrapper.IGeom.dict, yade.wrapper.Ig2_ChainedCylinder_ChainedCylinder_ScGeom6D.dict, yade.wrapper.Dispatcher.dict, yade.wrapper.CombinedKinematicEngine.dict, yade.wrapper.LBMlink.dict, yade.wrapper.Law2_ScGeom_LudingPhys_Basic.dict, yade.wrapper.Ip2_WireMat_WireMat_WirePhys.dict, yade.wrapper.Law2_ScGeom_ViscElCapPhys_Basic.dict, yade.wrapper.SimpleShear.dict, yade.wrapper.Bo1_Sphere_Aabb.dict, yade.wrapper.Engine.dict, yade.wrapper.ScGeom6D.dict, yade.wrapper.LudingPhys.dict, yade.wrapper.LBMbody.dict, yade.wrapper.KinemCNLEngine.dict, yade.wrapper.KinemCNDEngine.dict, yade.wrapper.WireState.dict, yade.wrapper.DragEngine.dict, yade.wrapper.CircularFactory.dict, yade.wrapper.Gl1_Sphere.dict, yade.wrapper.Scene.dict, yade.wrapper.Ip2_ElastMat_ElastMat_NormPhys.dict, yade.wrapper.Gl1_Aabb.dict, yade.wrapper.GlShapeFunctor.dict, yade.wrapper.Ip2_PolyhedraMat_PolyhedraMat_PolyhedraPhys.dict, yade.wrapper.TriaxialStressController.dict, yade.wrapper.Ig2_Wall_Sphere_L3Geom.dict, yade.wrapper.ChainedState.dict, yade.wrapper.Law2_GridCoGridCoGeom_FrictPhys_CundallStrack.dict, yade.wrapper.HarmonicMotionEngine.dict, yade.wrapper.Law2_ScGridCoGeom_CohFrictPhys_CundallStrack.dict, yade.wrapper.RadialForceEngine.dict, yade.wrapper.Functor.dict, yade.wrapper.GeneralIntegratorInsertionSortCollider.dict, yade.wrapper.ScGridCoGeom.dict, yade.wrapper.IGeomDispatcher.dict, yade.wrapper.ElastMat.dict, yade.wrapper.Law2_ScGeom_ViscElPhys_Basic.dict, yade.wrapper.MatchMaker.dict, yade.wrapper.ServoPIDController.dict, yade.wrapper.GlIGeomFunctor.dict, yade.wrapper.L3Geom.dict, yade.wrapper.Law2_CylScGeom_FrictPhys_CundallStrack.dict, yade.wrapper.HdapsGravityEngine.dict, yade.wrapper.CylScGeom6D.dict, yade.wrapper.Ig2_Sphere_GridConnection_ScGridCoGeom.dict, yade.wrapper.Cell.dict, yade.wrapper.JCFpmPhys.dict, yade.wrapper.NormShearPhys.dict, yade.wrapper.SpheresFactory.dict, yade.wrapper.Law2_ScGeom_CpmPhys_Cpm.dict, yade.wrapper.Bo1_Facet_Aabb.dict, yade.wrapper.GravityEngine.dict, yade.wrapper.Ip2_FrictViscoMat_FrictViscoMat_FrictViscoPhys.dict, yade.wrapper.KinemCTDEngine.dict, yade.wrapper.BubblePhys.dict, yade.wrapper.Ip2_FrictMat_FrictMat_MindlinPhys.dict, yade.wrapper.BoundDispatcher.dict, yade.wrapper.InterpolatingHelixEngine.dict, yade.wrapper.Law2_ScGeom_FrictPhys_CundallStrack.dict, yade.wrapper.Bo1_GridConnection_Aabb.dict, yade.wrapper.Ip2_BubbleMat_BubbleMat_BubblePhys.dict, yade.wrapper.BoundFunctor.dict, yade.wrapper.Bo1_Cylinder_Aabb.dict, yade.wrapper.Law2_TTetraSimpleGeom_NormPhys_Simple.dict, yade.wrapper.MindlinCapillaryPhys.dict, yade.wrapper.Gl1_Polyhedra.dict, yade.wrapper.IPhysDispatcher.dict, yade.wrapper.Ip2_FrictMat_FrictMat_FrictPhys.dict, yade.wrapper.If2_2xLin4NodeTetra_LinCohesiveStiffPropDampElastMat.dict, yade.wrapper.NormalInelasticMat.dict, yade.wrapper.FacetTopologyAnalyzer.dict, yade.wrapper.GlIPhysFunctor.dict, yade.wrapper.Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.dict, yade.wrapper.SpatialQuickSortCollider.dict, yade.wrapper.Gl1_L3Geom.dict, yade.wrapper.PeriodicFlowEngine.dict, yade.wrapper.Ip2_CpmMat_CpmMat_CpmPhys.dict, yade.wrapper.Law2_L3Geom_FrictPhys_ElPerfPl.dict, yade.wrapper.TriaxialCompressionEngine.dict, yade.wrapper.Disp2DPropLoadEngine.dict, yade.wrapper.JCFpmMat.dict, yade.wrapper.PolyhedraMat.dict, yade.wrapper.Serializable.dict, yade.wrapper.GlStateFunctor.dict, yade.wrapper.Bo1_DeformableElement_Aabb.dict, yade.wrapper.BoundaryController.dict, yade.wrapper.TranslationEngine.dict, yade.wrapper.InelastCohFrictMat.dict, yade.wrapper.Law2_ScGridCoGeom_FrictPhys_CundallStrack.dict, yade.wrapper.DeformableElementMaterial.dict, yade.wrapper.GlIGeomDispatcher.dict, yade.wrapper.ZECollider.dict, yade.wrapper.TorqueEngine.dict, yade.wrapper.FrictViscoPhys.dict, yade.wrapper.Recorder.dict, yade.wrapper.ChainedCylinder.dict, yade.wrapper.Polyhedra.dict, yade.wrapper.ForceEngine.dict, yade.wrapper.Ig2_Tetra_Tetra_TTetraGeom.dict, yade.wrapper.FEInternalForceEngine.dict, yade.wrapper.Ip2_FrictMat_PolyhedraMat_FrictPhys.dict, yade.wrapper.Gl1_Wall.dict, yade.wrapper.LawFunctor.dict, yade.wrapper.CpmState.dict, yade.wrapper.Sphere.dict, yade.wrapper.Bo1_Node_Aabb.dict, yade.wrapper.LinCohesiveElasticMaterial.dict, yade.wrapper.Gl1_L6Geom.dict, yade.wrapper.LinIsoRayleighDampElastMat.dict, yade.wrapper.BoxFactory.dict, yade.wrapper.Law2_ScGeom_CapillaryPhys_Capillarity.dict, yade.wrapper.CpmMat.dict, yade.wrapper.Ig2_Wall_Polyhedra_PolyhedraGeom.dict, yade.wrapper.FlowEngine.dict, yade.wrapper.Wall.dict, yade.wrapper.PolyhedraPhys.dict, yade.wrapper.Gl1_DeformableElement.dict, yade.wrapper.Ig2_Facet_Sphere_ScGeom6D.dict, yade.wrapper.InteractionLoop.dict, yade.wrapper.Ig2_Sphere_PFacet_ScGridCoGeom.dict, yade.wrapper.Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.dict, yade.wrapper.MortarPhys.dict, yade.wrapper.Gl1_Facet.dict, yade.wrapper.PyRunner.dict, yade.wrapper.Ig2_Sphere_Sphere_ScGeom6D.dict, yade.wrapper.CentralGravityEngine.dict, yade.wrapper.UniaxialStrainer.dict, yade.wrapper.FrictMat.dict, yade.wrapper.CylScGeom.dict, yade.wrapper.GlExtra_LawTester.dict, yade.wrapper.Law2_ScGeom_WirePhys_WirePM.dict, yade.wrapper.InternalForceDispatcher.dict, yade.wrapper.Ig2_Sphere_Sphere_L6Geom.dict, yade.wrapper.Law2_PolyhedraGeom_PolyhedraPhys_Volumetric.dict, yade.wrapper.GridNode.dict, yade.wrapper.FileGenerator.dict, yade.wrapper.Ig2_Sphere_ChainedCylinder_CylScGeom6D.dict, yade.wrapper.Ig2_PFacet_PFacet_ScGeom.dict, yade.wrapper.CpmPhys.dict, yade.wrapper.Ig2_Facet_Sphere_L3Geom.dict, yade.wrapper.Ip2_FrictMat_FrictMat_CapillaryPhys.dict, yade.wrapper.ViscElPhys.dict, yade.wrapper.EnergyTracker.dict, yade.wrapper.Ig2_GridConnection_GridConnection_GridCoGridCoGeom.dict, yade.wrapper.Aabb.dict, yade.wrapper.FieldApplier.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_MindlinDeresiewitz.dict, yade.wrapper.GlBoundFunctor.dict, yade.wrapper.State.dict, yade.wrapper.ScGeom.dict, yade.wrapper.Peri3dController.dict, yade.wrapper.InterpolatingDirectedForceEngine.dict, yade.wrapper.ForceRecorder.dict, yade.wrapper.Ig2_GridConnection_PFacet_ScGeom.dict, yade.wrapper.PartialEngine.dict, yade.wrapper.ViscElCapPhys.dict, yade.wrapper.FlatGridCollider.dict, yade.wrapper.DeformableElement.dict, yade.wrapper.CapillaryTriaxialTest.dict, yade.wrapper.Ip2_LudingMat_LudingMat_LudingPhys.dict, yade.wrapper.LinIsoElastMat.dict, yade.wrapper.HarmonicRotationEngine.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_PolyhedraGeomOrScGeom.dict, yade.wrapper.Law2_ScGeom6D_NormalInelasticityPhys_NormalInelasticity.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_Mindlin.dict, yade.wrapper.Ig2_Sphere_Polyhedra_ScGeom.dict, yade.wrapper.IGeomFunctor.dict, yade.wrapper.Ig2_Wall_Sphere_ScGeom.dict, yade.wrapper.DomainLimiter.dict, yade.wrapper.Gl1_ChainedCylinder.dict, yade.wrapper.If2_Lin4NodeTetra_LinIsoRayleighDampElast.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_PolyhedraGeom.dict, yade.wrapper.GlExtraDrawer.dict, yade.wrapper.HydroForceEngine.dict
writing... /home/hjz/yade2017/build/doc/sphinx/publications.rst:: WARNING: unusable reference target found: citing.html
/home/hjz/yade2017/build/doc/sphinx/publications.rst:: WARNING: unusable reference target found: citing.html
done
processing YadeManuals.tex... index-toctree_manuals introduction tutorial tutorial-introduction tutorial-hands-on tutorial-data-mining tutorial-geo tutorial-advanced tutorial-examples user prog installation github citing
resolving references...
writing... done
copying images... fig/qt-gui.png fig/yade-multi-summary.pdf fig/simple-scene-plot-4.pdf fig/simple-scene-plot-1.pdf fig/sweep-and-prune.pdf fig/yade-multi-gnuplot-merged.pdf fig/localstrain.png fig/predicate-difference.png fig/paraview-rendering-apply.png fig/spheres-contact-stiffness.pdf fig/yade-multi-gnuplot-single.pdf fig/funnel.pdf fig/paraview-glyph-icon.png fig/horse.png fig/cell-shear-aabb.pdf fig/yade-iter-loop.pdf fig/dispatch-loop.pdf fig/paraview-open-files.png fig/sphere-sphere.pdf fig/simple-scene-plot-3.pdf fig/hyperboloid.png fig/shear-2d.pdf fig/micro-domains.png fig/cell-flip.pdf fig/spheres-dofs.pdf fig/simple-scene-plot-2.pdf
copying TeX support files...
done
build succeeded, 17 warnings.
Running Sphinx v1.3.6
making output directory...
WARNING: the config value 'my_maketitle' is set to a string with non-ASCII characters; this can lead to Unicode errors occurring. Please use Unicode strings, e.g. u'Content'.
WARNING: extension 'youtube' has no setup() function; is it really a Sphinx extension module?
building [mo]: all of 0 po files
building [epub]: all source files
updating environment: 39 added, 0 changed, 0 removed
reading sources... [ 33%] introduction
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 321
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.bodies[100]
IndexError: Body id out of range.
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 327
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.bodies.append(s)
IndexError: Body already has id 0 set; appending such body (for the second time) is not allowed.
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/introduction.rst at block ending on line 382
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.interactions[100,10111]
IndexError: No such interaction
<<<-------------------------------------------------------------------------
reading sources... [ 38%] prog
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 434
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 Sphere().name ## getClassName()
AttributeError: 'Sphere' object has no attribute 'name'
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/prog.rst at block ending on line 1466
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.forces.f(100)
IndexError: Body id out of range.
<<<-------------------------------------------------------------------------
reading sources... [ 58%] tutorial-hands-on
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/tutorial-hands-on.rst at block ending on line 197
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 a[3] # error
IndexError: list index out of range
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/tutorial-hands-on.rst at block ending on line 226
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 b[0]=4 # error
TypeError: 'tuple' object does not support item assignment
<<<-------------------------------------------------------------------------
>>>-------------------------------------------------------------------------
Exception in /home/hjz/yade2017/build/doc/sphinx/tutorial-hands-on.rst at block ending on line 383
Specify :okexcept: as an option in the ipython:: block to suppress this message
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/__init__.py in <module>()
----> 1 O.bodies[1].shape.radius # radius of body #1 (will give error if not sphere, since only spheres have radius defined)
AttributeError: 'NoneType' object has no attribute 'shape'
<<<-------------------------------------------------------------------------
ERROR /home/hjz/yade2017/trunk/pkg/common/InsertionSortCollider.cpp:240 action: verletDist is set to 0 because no spheres were found. It will result in suboptimal performances, consider setting a positive verletDist in your script.
reading sources... [100%] yade.ymport
/home/hjz/yade2017/build/doc/sphinx/index-toctree-manuals.rst:6: WARNING: toctree contains reference to nonexisting document u'fullPublications'
/home/hjz/yade2017/build/doc/sphinx/index-toctree-reference.rst:5: WARNING: toctree contains reference to nonexisting document u'fullPublications'
/home/hjz/yade2017/build/doc/sphinx/index-toctree-theory.rst:5: WARNING: toctree contains reference to nonexisting document u'fullPublications'
/home/hjz/yade2017/build/doc/sphinx/publications.rst:127: WARNING: Inline emphasis start-string without end-string.
/home/hjz/yade2017/build/doc/sphinx/publications.rst:429: WARNING: Duplicate explicit target name: "maurin2015".
/home/hjz/yade2017/build/doc/sphinx/publications.rst:429: WARNING: duplicate citation Maurin2015, other instance in /home/hjz/yade2017/build/doc/sphinx/publications.rst
/home/hjz/yade2017/build/doc/sphinx/yade.wrapper.rst:1: WARNING: malformed hyperlink target.
looking for now-outdated files... none found
pickling environment... done
checking consistency... /home/hjz/yade2017/build/doc/sphinx/consulting.rst:: WARNING: document isn't included in any toctree
/home/hjz/yade2017/build/doc/sphinx/index-toctree-book.rst:: WARNING: document isn't included in any toctree
/home/hjz/yade2017/build/doc/sphinx/index-toctree_manuals.rst:: WARNING: document isn't included in any toctree
done
preparing documents... done
WARNING: LaTeX command 'latex' cannot be run (needed for math display), check the pngmath_latex setting
writing output... [100%] yade.ymport
/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/utils.py:docstring of yade.utils.UnstructuredGrid:None: WARNING: more than one target found for cross-reference u'dict': yade.wrapper.Facet.dict, yade.wrapper.InsertionSortCollider.dict, yade.wrapper.ViscElCapMat.dict, yade.wrapper.LinearDragEngine.dict, yade.wrapper.Law2_ScGeom_JCFpmPhys_JointedCohesiveFrictionalPM.dict, yade.wrapper.CapillaryStressRecorder.dict, yade.wrapper.PFacet.dict, yade.wrapper.LawDispatcher.dict, yade.wrapper.FlowEngine_PeriodicInfo.dict, yade.wrapper.GridCoGridCoGeom.dict, yade.wrapper.CohesiveTriaxialTest.dict, yade.wrapper.NewtonIntegrator.dict, yade.wrapper.ViscElMat.dict, yade.wrapper.HydrodynamicsLawLBM.dict, yade.wrapper.CohFrictPhys.dict, yade.wrapper.Bo1_Polyhedra_Aabb.dict, yade.wrapper.IPhys.dict, yade.wrapper.GlobalStiffnessTimeStepper.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom6D.dict, yade.wrapper.Ip2_FrictMat_CpmMat_FrictPhys.dict, yade.wrapper.TetraVolumetricLaw.dict, yade.wrapper.KinemCNSEngine.dict, yade.wrapper.Gl1_GridConnection.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_HertzWithLinearShear.dict, yade.wrapper.GridNodeGeom6D.dict, yade.wrapper.CohesiveDeformableElementMaterial.dict, yade.wrapper.KinemSimpleShearBox.dict, yade.wrapper.Law2_L6Geom_FrictPhys_Linear.dict, yade.wrapper.L6Geom.dict, yade.wrapper.GlIPhysDispatcher.dict, yade.wrapper.CohFrictMat.dict, yade.wrapper.Bo1_PFacet_Aabb.dict, yade.wrapper.SumIntrForcesCb.dict, yade.wrapper.MindlinPhys.dict, yade.wrapper.Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.dict, yade.wrapper.CpmStateUpdater.dict, yade.wrapper.Tetra.dict, yade.wrapper.Gl1_PolyhedraPhys.dict, yade.wrapper.ThreeDTriaxialEngine.dict, yade.wrapper.JCFpmState.dict, yade.wrapper.Bo1_Tetra_Aabb.dict, yade.wrapper.RungeKuttaCashKarp54Integrator.dict, yade.wrapper.Law2_ScGeom_MortarPhys_Lourenco.dict, yade.wrapper.Ig2_Sphere_Sphere_L3Geom.dict, yade.wrapper.Box.dict, yade.wrapper.PolyhedraSplitter.dict, yade.wrapper.LinCohesiveStiffPropDampElastMat.dict, yade.wrapper.TimeStepper.dict, yade.wrapper.Gl1_Box.dict, yade.wrapper.ForceResetter.dict, yade.wrapper.Gl1_Tetra.dict, yade.wrapper.TriaxialTest.dict, yade.wrapper.PeriTriaxController.dict, yade.wrapper.PeriodicEngine.dict, yade.wrapper.InternalForceFunctor.dict, yade.wrapper.Gl1_PolyhedraGeom.dict, yade.wrapper.VTKRecorder.dict, yade.wrapper.Bo1_ChainedCylinder_Aabb.dict, yade.wrapper.Ip2_2xNormalInelasticMat_NormalInelasticityPhys.dict, yade.wrapper.Bound.dict, yade.wrapper.BubbleMat.dict, yade.wrapper.KinematicEngine.dict, yade.wrapper.RotationEngine.dict, yade.wrapper.ResetRandomPosition.dict, yade.wrapper.Law2_ScGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.Law2_CylScGeom6D_CohFrictPhys_CohesionMoment.dict, yade.wrapper.FrictPhys.dict, yade.wrapper.Law2_ScGeom_BubblePhys_Bubble.dict, yade.wrapper.Gl1_CpmPhys.dict, yade.wrapper.GlobalEngine.dict, yade.wrapper.AxialGravityEngine.dict, yade.wrapper.NormPhys.dict, 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yade.wrapper.GlStateDispatcher.dict, yade.wrapper.Shape.dict, yade.wrapper.OpenGLRenderer.dict, yade.wrapper.Ip2_ElastMat_ElastMat_NormShearPhys.dict, yade.wrapper.ChCylGeom6D.dict, yade.wrapper.PolyhedraGeom.dict, yade.wrapper.Ig2_Facet_Polyhedra_PolyhedraGeom.dict, yade.wrapper.NormalInelasticityPhys.dict, yade.wrapper.Ig2_Tetra_Tetra_TTetraSimpleGeom.dict, yade.wrapper.HelixEngine.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom.dict, yade.wrapper.CapillaryPhys.dict, yade.wrapper.LawTester.dict, yade.wrapper.Ig2_Sphere_Sphere_ScGeom.dict, yade.wrapper.ViscoFrictPhys.dict, yade.wrapper.Gl1_NormPhys.dict, yade.wrapper.Clump.dict, yade.wrapper.IPhysFunctor.dict, yade.wrapper.Ig2_Sphere_ChainedCylinder_CylScGeom.dict, yade.wrapper.Cylinder.dict, yade.wrapper.Ig2_GridNode_GridNode_GridNodeGeom6D.dict, yade.wrapper.SnapshotEngine.dict, yade.wrapper.TorqueRecorder.dict, yade.wrapper.ParallelEngine.dict, yade.wrapper.InelastCohFrictPhys.dict, yade.wrapper.Bo1_Box_Aabb.dict, 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yade.wrapper.Bo1_Facet_Aabb.dict, yade.wrapper.GravityEngine.dict, yade.wrapper.Ip2_FrictViscoMat_FrictViscoMat_FrictViscoPhys.dict, yade.wrapper.KinemCTDEngine.dict, yade.wrapper.BubblePhys.dict, yade.wrapper.Ip2_FrictMat_FrictMat_MindlinPhys.dict, yade.wrapper.BoundDispatcher.dict, yade.wrapper.InterpolatingHelixEngine.dict, yade.wrapper.Law2_ScGeom_FrictPhys_CundallStrack.dict, yade.wrapper.Bo1_GridConnection_Aabb.dict, yade.wrapper.Ip2_BubbleMat_BubbleMat_BubblePhys.dict, yade.wrapper.BoundFunctor.dict, yade.wrapper.Bo1_Cylinder_Aabb.dict, yade.wrapper.Law2_TTetraSimpleGeom_NormPhys_Simple.dict, yade.wrapper.MindlinCapillaryPhys.dict, yade.wrapper.Gl1_Polyhedra.dict, yade.wrapper.IPhysDispatcher.dict, yade.wrapper.Ip2_FrictMat_FrictMat_FrictPhys.dict, yade.wrapper.If2_2xLin4NodeTetra_LinCohesiveStiffPropDampElastMat.dict, yade.wrapper.NormalInelasticMat.dict, yade.wrapper.FacetTopologyAnalyzer.dict, yade.wrapper.GlIPhysFunctor.dict, 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yade.wrapper.Ig2_Sphere_Sphere_ScGeom6D.dict, yade.wrapper.CentralGravityEngine.dict, yade.wrapper.UniaxialStrainer.dict, yade.wrapper.FrictMat.dict, yade.wrapper.CylScGeom.dict, yade.wrapper.GlExtra_LawTester.dict, yade.wrapper.Law2_ScGeom_WirePhys_WirePM.dict, yade.wrapper.InternalForceDispatcher.dict, yade.wrapper.Ig2_Sphere_Sphere_L6Geom.dict, yade.wrapper.Law2_PolyhedraGeom_PolyhedraPhys_Volumetric.dict, yade.wrapper.GridNode.dict, yade.wrapper.FileGenerator.dict, yade.wrapper.Ig2_Sphere_ChainedCylinder_CylScGeom6D.dict, yade.wrapper.Ig2_PFacet_PFacet_ScGeom.dict, yade.wrapper.CpmPhys.dict, yade.wrapper.Ig2_Facet_Sphere_L3Geom.dict, yade.wrapper.Ip2_FrictMat_FrictMat_CapillaryPhys.dict, yade.wrapper.ViscElPhys.dict, yade.wrapper.EnergyTracker.dict, yade.wrapper.Ig2_GridConnection_GridConnection_GridCoGridCoGeom.dict, yade.wrapper.Aabb.dict, yade.wrapper.FieldApplier.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_MindlinDeresiewitz.dict, yade.wrapper.GlBoundFunctor.dict, yade.wrapper.State.dict, yade.wrapper.ScGeom.dict, yade.wrapper.Peri3dController.dict, yade.wrapper.InterpolatingDirectedForceEngine.dict, yade.wrapper.ForceRecorder.dict, yade.wrapper.Ig2_GridConnection_PFacet_ScGeom.dict, yade.wrapper.PartialEngine.dict, yade.wrapper.ViscElCapPhys.dict, yade.wrapper.FlatGridCollider.dict, yade.wrapper.DeformableElement.dict, yade.wrapper.CapillaryTriaxialTest.dict, yade.wrapper.Ip2_LudingMat_LudingMat_LudingPhys.dict, yade.wrapper.LinIsoElastMat.dict, yade.wrapper.HarmonicRotationEngine.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_PolyhedraGeomOrScGeom.dict, yade.wrapper.Law2_ScGeom6D_NormalInelasticityPhys_NormalInelasticity.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_Mindlin.dict, yade.wrapper.Ig2_Sphere_Polyhedra_ScGeom.dict, yade.wrapper.IGeomFunctor.dict, yade.wrapper.Ig2_Wall_Sphere_ScGeom.dict, yade.wrapper.DomainLimiter.dict, yade.wrapper.Gl1_ChainedCylinder.dict, yade.wrapper.If2_Lin4NodeTetra_LinIsoRayleighDampElast.dict, 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/home/hjz/yade2017/install/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/utils.py:docstring of yade.utils.UnstructuredGrid:None: WARNING: more than one target found for cross-reference u'dict': yade.wrapper.Facet.dict, yade.wrapper.InsertionSortCollider.dict, yade.wrapper.ViscElCapMat.dict, yade.wrapper.LinearDragEngine.dict, yade.wrapper.Law2_ScGeom_JCFpmPhys_JointedCohesiveFrictionalPM.dict, yade.wrapper.CapillaryStressRecorder.dict, yade.wrapper.PFacet.dict, yade.wrapper.LawDispatcher.dict, yade.wrapper.FlowEngine_PeriodicInfo.dict, yade.wrapper.GridCoGridCoGeom.dict, yade.wrapper.CohesiveTriaxialTest.dict, yade.wrapper.NewtonIntegrator.dict, yade.wrapper.ViscElMat.dict, yade.wrapper.HydrodynamicsLawLBM.dict, yade.wrapper.CohFrictPhys.dict, yade.wrapper.Bo1_Polyhedra_Aabb.dict, yade.wrapper.IPhys.dict, yade.wrapper.GlobalStiffnessTimeStepper.dict, yade.wrapper.Ig2_Box_Sphere_ScGeom6D.dict, yade.wrapper.Ip2_FrictMat_CpmMat_FrictPhys.dict, yade.wrapper.TetraVolumetricLaw.dict, 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yade.wrapper.State.dict, yade.wrapper.ScGeom.dict, yade.wrapper.Peri3dController.dict, yade.wrapper.InterpolatingDirectedForceEngine.dict, yade.wrapper.ForceRecorder.dict, yade.wrapper.Ig2_GridConnection_PFacet_ScGeom.dict, yade.wrapper.PartialEngine.dict, yade.wrapper.ViscElCapPhys.dict, yade.wrapper.FlatGridCollider.dict, yade.wrapper.DeformableElement.dict, yade.wrapper.CapillaryTriaxialTest.dict, yade.wrapper.Ip2_LudingMat_LudingMat_LudingPhys.dict, yade.wrapper.LinIsoElastMat.dict, yade.wrapper.HarmonicRotationEngine.dict, yade.wrapper.Ig2_Polyhedra_Polyhedra_PolyhedraGeomOrScGeom.dict, yade.wrapper.Law2_ScGeom6D_NormalInelasticityPhys_NormalInelasticity.dict, yade.wrapper.Law2_ScGeom_MindlinPhys_Mindlin.dict, yade.wrapper.Ig2_Sphere_Polyhedra_ScGeom.dict, yade.wrapper.IGeomFunctor.dict, yade.wrapper.Ig2_Wall_Sphere_ScGeom.dict, yade.wrapper.DomainLimiter.dict, yade.wrapper.Gl1_ChainedCylinder.dict, yade.wrapper.If2_Lin4NodeTetra_LinIsoRayleighDampElast.dict, 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docstring of yade.wrapper.Ip2_JCFpmMat_JCFpmMat_JCFpmPhys:1: WARNING: citation not found: Duriez2016
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