yade-users team mailing list archive

[Jan Stránský <question443228@xxxxxxxxxxxxxxxxxxxxx>]

Question #443228 on Yade changed:
https://answers.launchpad.net/yade/+question/443228

Jan Stránský posted a new comment:
Strange, I tried it now and also got segmentation fault, too..

below see valgrind output in case it help for somebody. The error occurs
at the beginning of the last O.run command

cheers
Jan

#####################
==7339== Thread 8:
==7339== Invalid write of size 8
==7339==    at 0x8E295F0: ScGeom6D::initRotations(State const&, State const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x9064E4C: Ip2_CohFrictMat_CohFrictMat_CohFrictPhys::go(boost::shared_ptr<Material> const&, boost::shared_ptr<Material> const&, boost::shared_ptr<Interaction> const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x927C77B: InteractionLoop::action() [clone ._omp_fn.0] (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xDD81CBE: GOMP_parallel (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7339==    by 0x927D3BA: InteractionLoop::action() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B97BC1: Scene::moveToNextTimeStep() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B9B2C2: SimulationFlow::singleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8A85645: ThreadWorker::callSingleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93B90: ThreadRunner::call() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93E77: ThreadRunner::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B95A71: boost::detail::thread_data<boost::function0<void> >::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xAF0E5D4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.58.0)
==7339==  Address 0x2f87db10 is 0 bytes after a block of size 176 alloc'd
==7339==    at 0x4C2E0EF: operator new(unsigned long) (in /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
==7339==    by 0x8C3698B: Ig2_Box_Sphere_ScGeom::go(boost::shared_ptr<Shape> const&, boost::shared_ptr<Shape> const&, State const&, State const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, bool const&, boost::shared_ptr<Interaction> const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x927C624: InteractionLoop::action() [clone ._omp_fn.0] (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xDD81CBE: GOMP_parallel (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7339==    by 0x927D3BA: InteractionLoop::action() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B97BC1: Scene::moveToNextTimeStep() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B9B2C2: SimulationFlow::singleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8A85645: ThreadWorker::callSingleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93B90: ThreadRunner::call() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93E77: ThreadRunner::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B95A71: boost::detail::thread_data<boost::function0<void> >::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xAF0E5D4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.58.0)
==7339== 
==7339== Invalid write of size 8
==7339==    at 0x8E295FD: ScGeom6D::initRotations(State const&, State const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x9064E4C: Ip2_CohFrictMat_CohFrictMat_CohFrictPhys::go(boost::shared_ptr<Material> const&, boost::shared_ptr<Material> const&, boost::shared_ptr<Interaction> const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x927C77B: InteractionLoop::action() [clone ._omp_fn.0] (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xDD81CBE: GOMP_parallel (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7339==    by 0x927D3BA: InteractionLoop::action() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B97BC1: Scene::moveToNextTimeStep() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B9B2C2: SimulationFlow::singleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8A85645: ThreadWorker::callSingleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93B90: ThreadRunner::call() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93E77: ThreadRunner::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B95A71: boost::detail::thread_data<boost::function0<void> >::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xAF0E5D4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.58.0)
==7339==  Address 0x2f87db18 is 8 bytes after a block of size 176 alloc'd
==7339==    at 0x4C2E0EF: operator new(unsigned long) (in /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
==7339==    by 0x8C3698B: Ig2_Box_Sphere_ScGeom::go(boost::shared_ptr<Shape> const&, boost::shared_ptr<Shape> const&, State const&, State const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, bool const&, boost::shared_ptr<Interaction> const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x927C624: InteractionLoop::action() [clone ._omp_fn.0] (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xDD81CBE: GOMP_parallel (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7339==    by 0x927D3BA: InteractionLoop::action() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B97BC1: Scene::moveToNextTimeStep() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B9B2C2: SimulationFlow::singleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8A85645: ThreadWorker::callSingleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93B90: ThreadRunner::call() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93E77: ThreadRunner::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B95A71: boost::detail::thread_data<boost::function0<void> >::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xAF0E5D4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.58.0)
==7339== 
==7339== Invalid write of size 8
==7339==    at 0x8E2960A: ScGeom6D::initRotations(State const&, State const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x9064E4C: Ip2_CohFrictMat_CohFrictMat_CohFrictPhys::go(boost::shared_ptr<Material> const&, boost::shared_ptr<Material> const&, boost::shared_ptr<Interaction> const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x927C77B: InteractionLoop::action() [clone ._omp_fn.0] (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xDD81CBE: GOMP_parallel (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7339==    by 0x927D3BA: InteractionLoop::action() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B97BC1: Scene::moveToNextTimeStep() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B9B2C2: SimulationFlow::singleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8A85645: ThreadWorker::callSingleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93B90: ThreadRunner::call() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93E77: ThreadRunner::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B95A71: boost::detail::thread_data<boost::function0<void> >::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xAF0E5D4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.58.0)
==7339==  Address 0x2f87db20 is 16 bytes after a block of size 176 alloc'd
==7339==    at 0x4C2E0EF: operator new(unsigned long) (in /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
==7339==    by 0x8C3698B: Ig2_Box_Sphere_ScGeom::go(boost::shared_ptr<Shape> const&, boost::shared_ptr<Shape> const&, State const&, State const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, bool const&, boost::shared_ptr<Interaction> const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x927C624: InteractionLoop::action() [clone ._omp_fn.0] (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xDD81CBE: GOMP_parallel (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7339==    by 0x927D3BA: InteractionLoop::action() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B97BC1: Scene::moveToNextTimeStep() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B9B2C2: SimulationFlow::singleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8A85645: ThreadWorker::callSingleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93B90: ThreadRunner::call() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93E77: ThreadRunner::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B95A71: boost::detail::thread_data<boost::function0<void> >::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xAF0E5D4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.58.0)
==7339== 
==7339== Invalid write of size 8
==7339==    at 0x8E2961B: ScGeom6D::initRotations(State const&, State const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x9064E4C: Ip2_CohFrictMat_CohFrictMat_CohFrictPhys::go(boost::shared_ptr<Material> const&, boost::shared_ptr<Material> const&, boost::shared_ptr<Interaction> const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x927C77B: InteractionLoop::action() [clone ._omp_fn.0] (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xDD81CBE: GOMP_parallel (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7339==    by 0x927D3BA: InteractionLoop::action() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B97BC1: Scene::moveToNextTimeStep() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B9B2C2: SimulationFlow::singleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8A85645: ThreadWorker::callSingleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93B90: ThreadRunner::call() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93E77: ThreadRunner::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B95A71: boost::detail::thread_data<boost::function0<void> >::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xAF0E5D4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.58.0)
==7339==  Address 0x2f87db28 is 24 bytes after a block of size 176 in arena "client"
==7339== 

valgrind: m_mallocfree.c:303 (get_bszB_as_is): Assertion 'bszB_lo == bszB_hi' failed.
valgrind: Heap block lo/hi size mismatch: lo = 240, hi = 4607182418800017408.
This is probably caused by your program erroneously writing past the
end of a heap block and corrupting heap metadata.  If you fix any
invalid writes reported by Memcheck, this assertion failure will
probably go away.  Please try that before reporting this as a bug.


host stacktrace:
==7339==    at 0x38083F48: ??? (in /usr/lib/valgrind/memcheck-amd64-linux)
==7339==    by 0x38084064: ??? (in /usr/lib/valgrind/memcheck-amd64-linux)
==7339==    by 0x380841F1: ??? (in /usr/lib/valgrind/memcheck-amd64-linux)
==7339==    by 0x38091A9C: ??? (in /usr/lib/valgrind/memcheck-amd64-linux)
==7339==    by 0x3807D673: ??? (in /usr/lib/valgrind/memcheck-amd64-linux)
==7339==    by 0x3807BF03: ??? (in /usr/lib/valgrind/memcheck-amd64-linux)
==7339==    by 0x380800DA: ??? (in /usr/lib/valgrind/memcheck-amd64-linux)
==7339==    by 0x3807B49A: ??? (in /usr/lib/valgrind/memcheck-amd64-linux)
==7339==    by 0x8195C771B: ???
==7339==    by 0x8161FFF1F: ???
==7339==    by 0x80201472F: ???
==7339==    by 0x8E295DF: ??? (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x80201472F: ???
==7339==    by 0xDFFF: ???
==7339==    by 0xACEA73: ???
==7339==    by 0x818DA7FFF: ???
==7339==    by 0x13E36: ???

sched status:
  running_tid=8

Thread 1: status = VgTs_WaitSys (lwpid 7339)
==7339==    at 0x4E4AC1D: ??? (syscall-template.S:84)
==7339==    by 0x168F267A: pyOmega::run(long, bool) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/wrapper.so)
==7339==    by 0x168EB322: boost::python::objects::caller_py_function_impl<boost::python::detail::caller<void (pyOmega::*)(long, bool), boost::python::default_call_policies, boost::mpl::vector4<void, pyOmega&, long, bool> > >::operator()(_object*, _object*) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/py/yade/wrapper.so)
==7339==    by 0x9FB05CC: boost::python::objects::function::call(_object*, _object*) const (in /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0)
==7339==    by 0x9FB07C7: ??? (in /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0)
==7339==    by 0x9FB8612: boost::python::handle_exception_impl(boost::function0<void>) (in /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0)
==7339==    by 0x9FAD998: ??? (in /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0)
==7339==    by 0x4B0CB2: PyObject_Call (in /usr/bin/python2.7)
==7339==    by 0x4C9FAE: PyEval_EvalFrameEx (in /usr/bin/python2.7)
==7339==    by 0x4C2764: PyEval_EvalCodeEx (in /usr/bin/python2.7)
==7339==    by 0x4C2508: PyEval_EvalCode (in /usr/bin/python2.7)
==7339==    by 0x4F1DEE: ??? (in /usr/bin/python2.7)
==7339==    by 0x4EC651: PyRun_FileExFlags (in /usr/bin/python2.7)
==7339==    by 0x555039: ??? (in /usr/bin/python2.7)
==7339==    by 0x4C4689: PyEval_EvalFrameEx (in /usr/bin/python2.7)
==7339==    by 0x4C2764: PyEval_EvalCodeEx (in /usr/bin/python2.7)
==7339==    by 0x4CA8D0: PyEval_EvalFrameEx (in /usr/bin/python2.7)
==7339==    by 0x4C2764: PyEval_EvalCodeEx (in /usr/bin/python2.7)
==7339==    by 0x4CA098: PyEval_EvalFrameEx (in /usr/bin/python2.7)
==7339==    by 0x4C2764: PyEval_EvalCodeEx (in /usr/bin/python2.7)
==7339==    by 0x4C2508: PyEval_EvalCode (in /usr/bin/python2.7)
==7339==    by 0x4F1DEE: ??? (in /usr/bin/python2.7)
==7339==    by 0x4EC651: PyRun_FileExFlags (in /usr/bin/python2.7)
==7339==    by 0x4EAE30: PyRun_SimpleFileExFlags (in /usr/bin/python2.7)
==7339==    by 0x49E149: Py_Main (in /usr/bin/python2.7)
==7339==    by 0x507782F: (below main) (libc-start.c:291)

Thread 2: status = VgTs_WaitSys (lwpid 7359)
==7339==    at 0x51539E3: ??? (syscall-template.S:84)
==7339==    by 0x598801: ??? (in /usr/bin/python2.7)
==7339==    by 0x4CB45D: PyEval_EvalFrameEx (in /usr/bin/python2.7)
==7339==    by 0x4C2764: PyEval_EvalCodeEx (in /usr/bin/python2.7)
==7339==    by 0x4CA8D0: PyEval_EvalFrameEx (in /usr/bin/python2.7)
==7339==    by 0x4C2764: PyEval_EvalCodeEx (in /usr/bin/python2.7)
==7339==    by 0x4CA098: PyEval_EvalFrameEx (in /usr/bin/python2.7)
==7339==    by 0x4C2764: PyEval_EvalCodeEx (in /usr/bin/python2.7)
==7339==    by 0x4DE6FD: ??? (in /usr/bin/python2.7)
==7339==    by 0x4B0CB2: PyObject_Call (in /usr/bin/python2.7)
==7339==    by 0x4F492D: ??? (in /usr/bin/python2.7)
==7339==    by 0x4B0CB2: PyObject_Call (in /usr/bin/python2.7)
==7339==    by 0x4CE5CF: PyEval_CallObjectWithKeywords (in /usr/bin/python2.7)
==7339==    by 0x20E2CE43: ??? (in /usr/lib/python2.7/dist-packages/sip.x86_64-linux-gnu.so)
==7339==    by 0x20A686FF: ??? (in /usr/lib/python2.7/dist-packages/PyQt5/QtCore.x86_64-linux-gnu.so)
==7339==    by 0x20B2A1B2: ??? (in /usr/lib/python2.7/dist-packages/PyQt5/QtCore.x86_64-linux-gnu.so)
==7339==    by 0xD4627BD: ??? (in /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.5.1)
==7339==    by 0x4E416B9: start_thread (pthread_create.c:333)

Thread 3: status = VgTs_WaitSys (lwpid 7360)
==7339==    at 0x51539E3: ??? (syscall-template.S:84)
==7339==    by 0x598801: ??? (in /usr/bin/python2.7)
==7339==    by 0x4CB45D: PyEval_EvalFrameEx (in /usr/bin/python2.7)
==7339==    by 0x4C2764: PyEval_EvalCodeEx (in /usr/bin/python2.7)
==7339==    by 0x4CA8D0: PyEval_EvalFrameEx (in /usr/bin/python2.7)
==7339==    by 0x4C2764: PyEval_EvalCodeEx (in /usr/bin/python2.7)
==7339==    by 0x4CA098: PyEval_EvalFrameEx (in /usr/bin/python2.7)
==7339==    by 0x4C2764: PyEval_EvalCodeEx (in /usr/bin/python2.7)
==7339==    by 0x4DE6FD: ??? (in /usr/bin/python2.7)
==7339==    by 0x4B0CB2: PyObject_Call (in /usr/bin/python2.7)
==7339==    by 0x4F492D: ??? (in /usr/bin/python2.7)
==7339==    by 0x4B0CB2: PyObject_Call (in /usr/bin/python2.7)
==7339==    by 0x4CE5CF: PyEval_CallObjectWithKeywords (in /usr/bin/python2.7)
==7339==    by 0x20E2CE43: ??? (in /usr/lib/python2.7/dist-packages/sip.x86_64-linux-gnu.so)
==7339==    by 0x20A686FF: ??? (in /usr/lib/python2.7/dist-packages/PyQt5/QtCore.x86_64-linux-gnu.so)
==7339==    by 0x20B2A1B2: ??? (in /usr/lib/python2.7/dist-packages/PyQt5/QtCore.x86_64-linux-gnu.so)
==7339==    by 0xD4627BD: ??? (in /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.5.1)
==7339==    by 0x4E416B9: start_thread (pthread_create.c:333)

Thread 4: status = VgTs_WaitSys (lwpid 7362)
==7339==    at 0x5151B5D: ??? (syscall-template.S:84)
==7339==    by 0x12DABC61: ??? (in /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0)
==7339==    by 0x12DAD8D6: xcb_wait_for_event (in /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0)
==7339==    by 0x2910E628: ??? (in /usr/lib/x86_64-linux-gnu/libQt5XcbQpa.so.5.5.1)
==7339==    by 0xD4627BD: ??? (in /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.5.1)
==7339==    by 0x4E416B9: start_thread (pthread_create.c:333)

Thread 5: status = VgTs_WaitSys (lwpid 7363)
==7339==    at 0x5151B5D: ??? (syscall-template.S:84)
==7339==    by 0x1123838B: ??? (in /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2)
==7339==    by 0x1123849B: g_main_context_iteration (in /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2)
==7339==    by 0x31E6428C: ??? (in /usr/lib/x86_64-linux-gnu/gio/modules/libdconfsettings.so)
==7339==    by 0x1125EBB4: ??? (in /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2)
==7339==    by 0x4E416B9: start_thread (pthread_create.c:333)

Thread 6: status = VgTs_WaitSys (lwpid 7365)
==7339==    at 0x5151B5D: ??? (syscall-template.S:84)
==7339==    by 0x1123838B: ??? (in /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2)
==7339==    by 0x1123849B: g_main_context_iteration (in /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2)
==7339==    by 0x112384D8: ??? (in /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2)
==7339==    by 0x1125EBB4: ??? (in /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2)
==7339==    by 0x4E416B9: start_thread (pthread_create.c:333)

Thread 7: status = VgTs_WaitSys (lwpid 7366)
==7339==    at 0x5151B5D: ??? (syscall-template.S:84)
==7339==    by 0x1123838B: ??? (in /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2)
==7339==    by 0x11238711: g_main_loop_run (in /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2)
==7339==    by 0x2E10F9D5: ??? (in /usr/lib/x86_64-linux-gnu/libgio-2.0.so.0.4800.2)
==7339==    by 0x1125EBB4: ??? (in /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2)
==7339==    by 0x4E416B9: start_thread (pthread_create.c:333)

Thread 8: status = VgTs_Runnable (lwpid 8004)
==7339==    at 0x8E29627: ScGeom6D::initRotations(State const&, State const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x9064E4C: Ip2_CohFrictMat_CohFrictMat_CohFrictPhys::go(boost::shared_ptr<Material> const&, boost::shared_ptr<Material> const&, boost::shared_ptr<Interaction> const&) (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x927C77B: InteractionLoop::action() [clone ._omp_fn.0] (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xDD81CBE: GOMP_parallel (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7339==    by 0x927D3BA: InteractionLoop::action() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B97BC1: Scene::moveToNextTimeStep() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B9B2C2: SimulationFlow::singleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8A85645: ThreadWorker::callSingleAction() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93B90: ThreadRunner::call() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B93E77: ThreadRunner::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0x8B95A71: boost::detail::thread_data<boost::function0<void> >::run() (in /home/honzik/lib/x86_64-linux-gnu/yade-2017.01a/libyade.so)
==7339==    by 0xAF0E5D4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.58.0)
==7339==    by 0x4E416B9: start_thread (pthread_create.c:333)


Note: see also the FAQ in the source distribution.
It contains workarounds to several common problems.
In particular, if Valgrind aborted or crashed after
identifying problems in your program, there's a good chance
that fixing those problems will prevent Valgrind aborting or
crashing, especially if it happened in m_mallocfree.c.

If that doesn't help, please report this bug to: www.valgrind.org

In the bug report, send all the above text, the valgrind
version, and what OS and version you are using.  Thanks.
#####################

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