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Re: [Question #693698]: Trouble when compiling with g++-9 or g++-7

To: yade-users@xxxxxxxxxxxxxxxxxxx
From: Anton Gladky <question693698@xxxxxxxxxxxxxxxxxxxxx>
Date: Thu, 29 Oct 2020 20:45:47 -0000
Reply-to: question693698@xxxxxxxxxxxxxxxxxxxxx
Sender: bounces@xxxxxxxxxxxxx
Question #693698 on Yade changed:
https://answers.launchpad.net/yade/+question/693698

Anton Gladky proposed the following answer:
Hi,

you are compiling with clang, not with gcc:

-- The C compiler identification is Clang 6.0.0
-- The CXX compiler identification is Clang 6.0.0

Be sure to have empty CC and CXX environmental variables.
Or set them explicitly.

Regards

Anton

Am Do., 29. Okt. 2020 um 18:41 Uhr schrieb Sacha Duverger
<question693698@xxxxxxxxxxxxxxxxxxxxx>:
>
> Question #693698 on Yade changed:
> https://answers.launchpad.net/yade/+question/693698
>
> Sacha Duverger posted a new comment:
> Thank you for your answers,
>
> Before trying to compile with g++-7 I emptied the "build" and "install"
> directories (with "rm -r build/* install/*"), this counts has a fresh
> directory right? Anyway, I tried to start from a really fresh directory
> (with another name) and had the same problem.
>
> The g++-9 installed on my machine worked well when I used it to compile
> another package (this package is the reason why I upgraded g++ in the
> first place). Can there still be a problem with g++-9's necessary
> packages while it already worked for another package than YADE?
>
> I tried to compile YADE with clang but I don't see where I can identify
> which package cause problems with g++. See [1] for the outputs of cmake
> and make install.
>
> I also tried to uninstall and reinstall all of my g++ versions, hoping
> that it could fix problems on the necessary packages, but it still
> doesn't work.
>
> ####################################################################################################################################################################################
> [1] : Running cmake and make with clang
>
> ## cmake command
>
> cmake -DENABLE_GUI=ON -DENABLE_MPI=OFF -DENABLE_PFVFLOW=OFF
> -DENABLE_TWOPHASEFLOW=OFF -DENABLE_LBMFLOW=OFF
> -DENABLE_POTENTIAL_BLOCKS=OFF -DCMAKE_CXX_COMPILER=clang
> -DCMAKE_INSTALL_PREFIX=../install ../trunk
>
> ## cmake output
>
> -- The C compiler identification is Clang 6.0.0
> -- The CXX compiler identification is Clang 6.0.0
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /usr/bin/cc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/clang - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Version is set to 2020-10-20.git-427f64c
> -- GCC Version >= 4.8. Adding -save-temps
> -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
> -- Log filtering: enabled
> -- Enabling boost::log library and DEBUG=OFF. Logging will work nicely, backtraces will not have debug info, files will be small.
> Loop on the following python versions and check available dependencies:3.8;3.7;3.6;3.5;3.4;3.3;3.2;3.1;3.0;2.7;2.6
> -- Found PythonInterp: /usr/bin/python (found version "2.7.17")
> -- Found PythonInterp: /usr/bin/python3.6 (found version "3.6.9")
> Python version 3.6.9 found, try to import dependencies...
> -- Found NumPy: version "1.18.4" /home/sacha.duverger/.local/lib/python3.6/site-packages/numpy/core/include
> -- Found IPython: /usr/lib/python3/dist-packages/IPython
> -- Found matplotlib: /home/sacha.duverger/.local/lib/python3.6/site-packages/matplotlib
> -- Found pygraphviz: /usr/lib/python3/dist-packages/pygraphviz
> -- Found Xlib: /usr/lib/python3/dist-packages/Xlib
> -- Found future: /usr/lib/python3/dist-packages/future
> -- Found past: /usr/lib/python3/dist-packages/past
> -- Found tkinter: /usr/lib/python3.6/tkinter
> --   Boost_VERSION: 106501
> --   Boost_LIB_VERSION: 1_65_1
> --   Boost_INCLUDE_DIRS: /usr/include
> --   Boost_LIBRARIES: /usr/lib/x86_64-linux-gnu/libboost_python3-py36.so/usr/lib/x86_64-linux-gnu/libboost_thread.so-lpthread/usr/lib/x86_64-linux-gnu/libboost_filesystem.so/usr/lib/x86_64-linux-gnu/libboost_iostreams.so/usr/lib/x86_64-linux-gnu/libboost_regex.so/usr/lib/x86_64-linux-gnu/libboost_serialization.so/usr/lib/x86_64-linux-gnu/libboost_system.so/usr/lib/x86_64-linux-gnu/libboost_date_time.so/usr/lib/x86_64-linux-gnu/libboost_log.so/usr/lib/x86_64-linux-gnu/libboost_chrono.so/usr/lib/x86_64-linux-gnu/libboost_atomic.so/usr/lib/x86_64-linux-gnu/libboost_log_setup.so
> Found all python dependencies with version 3.6.9, will compile yade with that.
> -- Chosen compiler flags are: CMAKE_CXX_FLAGS =   -Werror -Wformat -Wformat-security -Wformat-nonliteral -Wall -Wextra -Wnarrowing -Wreturn-type -Wuninitialized -Wfloat-conversion -Wcast-align -Wdisabled-optimization -Wtrampolines -Wpointer-arith -Wswitch-bool -Wwrite-strings -Wnon-virtual-dtor -Wreturn-local-addr  -Wno-error=maybe-uninitialized -Wno-comment -Wno-error=cpp -fdce -fstack-protector-strong
> -- Determining preferred precision of Real numbers
> -- Will now try to find python-mpmath using /usr/bin/python3.6
> -- Disabling RealHP<N>, this compiler is too old to make this work.
> -- mpfr disabled
> -- Will use PrecisionDouble as Real type with 15 decimal places precision and use 64 bits of storage.
> -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6")
> -- Looking for BZ2_bzCompressInit
> -- Looking for BZ2_bzCompressInit - found
> -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11")
> -- Found Eigen3, version: 3.3.4
> -- Disable vectorization
> CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message):
>   The new name for the 'vtkIOParallelXML' component is 'IOParallelXML'
> Call Stack (most recent call first):
>   CMakeLists.txt:642 (FIND_PACKAGE)
>
>
> CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message):
>   The new name for the 'vtkCommonCore' component is 'CommonCore'
> Call Stack (most recent call first):
>   CMakeLists.txt:642 (FIND_PACKAGE)
>
>
> CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message):
>   The new name for the 'vtkIOImage' component is 'IOImage'
> Call Stack (most recent call first):
>   CMakeLists.txt:642 (FIND_PACKAGE)
>
>
> CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message):
>   The new name for the 'vtkIOXML' component is 'IOXML'
> Call Stack (most recent call first):
>   CMakeLists.txt:642 (FIND_PACKAGE)
>
>
> CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message):
>   The new name for the 'vtkFiltersCore' component is 'FiltersCore'
> Call Stack (most recent call first):
>   CMakeLists.txt:642 (FIND_PACKAGE)
>
>
> CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message):
>   The new name for the 'vtkImagingCore' component is 'ImagingCore'
> Call Stack (most recent call first):
>   CMakeLists.txt:642 (FIND_PACKAGE)
>
>
> CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message):
>   The new name for the 'vtkRenderingCore' component is 'RenderingCore'
> Call Stack (most recent call first):
>   CMakeLists.txt:642 (FIND_PACKAGE)
>
>
> CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message):
>   The new name for the 'vtkImagingGeneral' component is 'ImagingGeneral'
> Call Stack (most recent call first):
>   CMakeLists.txt:642 (FIND_PACKAGE)
>
>
> CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message):
>   The new name for the 'vtkImagingHybrid' component is 'ImagingHybrid'
> Call Stack (most recent call first):
>   CMakeLists.txt:642 (FIND_PACKAGE)
>
>
> -- Found Threads: TRUE
> -- Found VTK
> -- Found OpenMP_C: -fopenmp=libomp (found version "3.1")
> -- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES)
> -- Could NOT find OpenMP (missing: OpenMP_CXX_FOUND) (found version "3.1")
> -- OpenMP NOT found
> -- GTS using gts-config /usr/bin/gts-config
> -- Using GTS from /usr
> CMake Warning (dev) at /usr/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message):
>   The package name passed to `find_package_handle_standard_args` (PkgConfig)
>   does not match the name of the calling package (glib2).  This can lead to
>   problems in calling code that expects `find_package` result variables
>   (e.g., `_FOUND`) to follow a certain pattern.
> Call Stack (most recent call first):
>   /usr/share/cmake-3.18/Modules/FindPkgConfig.cmake:59 (find_package_handle_standard_args)
>   cMake/Findglib2.cmake:30 (INCLUDE)
>   CMakeLists.txt:675 (FIND_PACKAGE)
> This warning is for project developers.  Use -Wno-dev to suppress it.
>
> -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
> -- Checking for one of the modules 'glib-2.0'
> -- Found GLib2: glib-2.0 /usr/include/glib-2.0;/usr/lib/x86_64-linux-gnu/glib-2.0/include
> -- Looking for include file glib/gregex.h
> -- Looking for include file glib/gregex.h - not found
> -- Found GTS
> CMake Warning (dev) at /usr/share/cmake-3.18/Modules/FindOpenGL.cmake:305 (message):
>   Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when
>   available.  Run "cmake --help-policy CMP0072" for policy details.  Use the
>   cmake_policy command to set the policy and suppress this warning.
>
>   FindOpenGL found both a legacy GL library:
>
>     OPENGL_gl_LIBRARY: /usr/lib/x86_64-linux-gnu/libGL.so
>
>   and GLVND libraries for OpenGL and GLX:
>
>     OPENGL_opengl_LIBRARY: /usr/lib/x86_64-linux-gnu/libOpenGL.so
>     OPENGL_glx_LIBRARY: /usr/lib/x86_64-linux-gnu/libGLX.so
>
>   OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for
>   compatibility with CMake 3.10 and below the legacy GL library will be used.
> Call Stack (most recent call first):
>   CMakeLists.txt:693 (FIND_PACKAGE)
> This warning is for project developers.  Use -Wno-dev to suppress it.
>
> -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so
> -- Found GLUT: /usr/lib/x86_64-linux-gnu/libglut.so
> -- USE QT5
> -- Found QGLVIEWER-qt5: /usr/include/QGLViewer
> -- Found GUI-Qt5-LIBS
> -- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libgmpxx.so
> -- Found GMP: /usr/include/x86_64-linux-gnu
> -- Found CGAL: /usr/include, /usr/lib/x86_64-linux-gnu/libCGAL.so
> -- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libgmpxx.so
> -- CGAL NOT found
> -- Found GL2PS: /usr/lib/x86_64-linux-gnu/libgl2ps.so
> -- Found GL2PS
> -- Found OpenBlas: /usr/lib/x86_64-linux-gnu/libopenblas.so
> -- BLAS_INCLUDE_DIR=/usr/include/x86_64-linux-gnu
> -- Looking for sgemm_
> -- Looking for sgemm_ - not found
> -- Looking for sgemm_
> -- Looking for sgemm_ - found
> -- Found BLAS: /usr/lib/x86_64-linux-gnu/libopenblas.so
> -- Looking for cheev_
> -- Looking for cheev_ - found
> -- A library with LAPACK API found.
> -- Found OpenBlas
> -- Found Lapack
> -- md5sum of freegult /usr/include/GL/freeglut_std.h is: 791a2febd8584ec530cdd7676191b6d5
> -- freegult version is 2.8.1
> Yade will be installed to /home/sacha.duverger/packages/yade/install
> -- Suffix is set to -2020-10-20.git-427f64c
> -- LIBRARY_OUTPUT_PATH is set to lib/x86_64-linux-gnu
> -- runtimePREFIX is set to /home/sacha.duverger/packages/yade/install
> -- Could NOT find gts (missing: PY_gts)
> -- Use embedded version of gts. Please, consider installing the corresponding package
> -- linking -lquadmath skipped
> -- VTK version >7 is found
> -- ===========================================================
> -- Yade configured with following features: BoostLog PrecisionDouble Odeint VTK GTS GUI-Qt5 FEMLIKE GL2PS PotentialParticles
> -- Disabled features: RealHP mpmath MPFR OPENMP CGAL PFVFLOW LINSOLV MPI TWOPHASEFLOW SPH DEFORM LIQMIGRATION LBMFLOW MASK_ARBITRARY THERMAL PARTIALSAT PROFILING PotentialBlocks
> -- Using MAX_LOG_LEVEL=5, ENABLE_LOGGER=ON
> -- Optimized build
> -- C++ standard version: 14
> -- ===========================================================
> -- Configuring done
> -- Generating done
> -- Build files have been written to: /home/sacha.duverger/packages/yade/build
>
> ## make install output
>
> Scanning dependencies of target _GLViewer_autogen
> [  0%] Automatic MOC for target _GLViewer
> Scanning dependencies of target _gts
> Scanning dependencies of target _packObb
> [  0%] Building CXX object py/CMakeFiles/_gts.dir/3rd-party/pygts-0.3.1/cleanup.cpp.o
> [  1%] Building CXX object py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o
> Scanning dependencies of target _polyhedra_utils
> [  1%] Building CXX object py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o
> clang: error: unknown argument: '-fdce'
> py/CMakeFiles/_gts.dir/build.make:81: recipe for target 'py/CMakeFiles/_gts.dir/3rd-party/pygts-0.3.1/cleanup.cpp.o' failed
> make[2]: *** [py/CMakeFiles/_gts.dir/3rd-party/pygts-0.3.1/cleanup.cpp.o] Error 1
> CMakeFiles/Makefile2:355: recipe for target 'py/CMakeFiles/_gts.dir/all' failed
> make[1]: *** [py/CMakeFiles/_gts.dir/all] Error 2
> make[1]: *** Waiting for unfinished jobs....
> clang: error: unknown argument: '-fdce'
> py/CMakeFiles/_packObb.dir/build.make:81: recipe for target 'py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o' failed
> make[2]: *** [py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o] Error 1
> CMakeFiles/Makefile2:437: recipe for target 'py/CMakeFiles/_packObb.dir/all' failed
> make[1]: *** [py/CMakeFiles/_packObb.dir/all] Error 2
> clang: error: unknown argument: '-fdce'
> py/CMakeFiles/_polyhedra_utils.dir/build.make:81: recipe for target 'py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o' failed
> make[2]: *** [py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o] Error 1
> CMakeFiles/Makefile2:410: recipe for target 'py/CMakeFiles/_polyhedra_utils.dir/all' failed
> make[1]: *** [py/CMakeFiles/_polyhedra_utils.dir/all] Error 2
> [  1%] Built target _GLViewer_autogen
> Makefile:148: recipe for target 'all' failed
> make: *** [all] Error 2
>
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