yade-users team mailing list archive
-
yade-users team
-
Mailing list archive
-
Message #24803
Re: [Question #695081]: [Solved] Compilation failed on vtk8.2.0
Question #695081 on Yade changed:
https://answers.launchpad.net/yade/+question/695081
Kan Su posted a new comment:
Thanks, It works!
After I copied all files from potentialVTKRecorders/ver9/ to
potentialVTKRecorders/ver8.2/, all checks passed!
```
yade --checkall
Welcome to Yade 2021.01a
Using python version: 3.9.1 (default, Dec 13 2020, 11:55:53)
[GCC 10.2.0]
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
###################################
running: checkViscElPM.py
Status: success, time spent on this check: 0:00:00.194854
___________________________________
###################################
running: checkPolyhedraCrush.py
CGAL version is (4, 14, 3) . Will test for (cgal version > 4.9) and (cgal version < 5.1.1)
<WARNING> PolyhedraSplitter:96 virtual void yade::PolyhedraSplitter::action(): be careful, the PolyhedraSplitter returns different results depending on CGAL version! This will not produce reproducible calculations. For details see https://gitlab.com/yade-dev/trunk/issues/45
Checkpoint: force values and number of bodies are OK! Iteration 166
Status: success, time spent on this check: 0:00:00.104968
___________________________________
###################################
running: checkMPI4PYcomm.py
Master: will spawn 1 workers running: /usr/bin/yade ['/usr/lib/yade/py/yade/tests/checks/checkMPI4PYcomm.py']
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Worker1: spawned!
____ MPI comm times: ____
1e4 integers in a python list: 0.0005977869033813477
1e4 integers in a python array: 6.968975067138672e-05
Status: success, time spent on this check: 0:00:00.874305
___________________________________
###################################
running: checkAvoidSelfInteractionMask.py
testing collider.avoidSelfInteractionMask
0 bb br gg gr rr
1 bb br gr
2 br gg gr
3 br gr
Status: success, time spent on this check: 0:00:00.004887
___________________________________
###################################
running: checkPotentialVTKRecorders.py
checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/ppcontactPoint.10.vtu
checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/ppId.10.vtu
checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/pp-pb.10.vtp
checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/ppvel.10.vtu
non-matching lines: 0
checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/pbcontactPoint.10.vtu
checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/pbId.10.vtu
checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/pb-pb.10.vtp
checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/pbvel.10.vtu
non-matching lines: 0
Status: success, time spent on this check: 0:00:00.087385
___________________________________
###################################
running: checkViscElPM2.py
Status: success, time spent on this check: 0:00:00.202185
___________________________________
###################################
running: check_TwoPhaseFlowEngine_PressureInjection.py
/usr/lib/yade/py/yade/plot.py:463: MatplotlibDeprecationWarning:
The 'verts' parameter of scatter() was deprecated in Matplotlib 3.2 and will be removed two minor releases later. If any parameter follows 'verts', they should be passed as keyword, not positionally.
scatter=pylab.scatter(scatterPt[0] if not math.isnan(scatterPt[0]) else 0,scatterPt[1] if not math.isnan(scatterPt[1]) else 0,s=scatterSize,color=line.get_color(),**scatterMarkerKw)
File ./vtk moved into /tmp/tmpftqt2gzj/ directory
File ./Test.txt moved into /tmp/tmpftqt2gzj/ directory
Status: success, time spent on this check: 0:00:04.746889
___________________________________
###################################
running: checkVTKRecorder.py
checkVTKRecorder
checking file: /tmp/tmpf1dlsg0k/vtk_testing/10.vtm
checking file: /tmp/tmpf1dlsg0k/vtk_testing/10/10_0.vtu
checking file: /tmp/tmpf1dlsg0k/vtk_testing/10/10_2.vtp
non-matching lines: 113
Status: success, time spent on this check: 0:00:00.062857
___________________________________
###################################
running: checkTestDummy.py
checkTest mechanism
Status: success, time spent on this check: 0:00:00.001540
___________________________________
###################################
Skipping checkMPISilo.py, because it is in skipScripts.
###################################
running: checkLubrication.py
Status: success, time spent on this check: 0:00:01.686369
___________________________________
###################################
running: checkLubricationWithRoughness.py
Status: success, time spent on this check: 0:00:01.726809
___________________________________
###################################
running: checkMPYcomm.py
Master: will spawn 9 workers running: /usr/bin/yade ['/usr/lib/yade/py/yade/tests/checks/checkMPYcomm.py']
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Master: will spawn 7 workers running: /usr/bin/yade ['/usr/lib/yade/py/yade/tests/checks/checkMPYcomm.py']
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Master: MPYcomm disconnect
Status: success, time spent on this check: 0:00:01.828741
___________________________________
###################################
Skipping checkList.py, because it is in skipScripts.
###################################
running: checkWirePM.py
Status: success, time spent on this check: 0:00:19.050272
___________________________________
###################################
running: checkDEM-PFVPressureInjection.py
File ./vtk moved into /tmp/tmpb1nhiz36/ directory
File ./Test.txt moved into /tmp/tmpb1nhiz36/ directory
Status: success, time spent on this check: 0:00:36.501007
___________________________________
###################################
running: checkColliderCorrectness.py
checkColliderCorrectness for InsertionSortCollider
Status: success, time spent on this check: 0:00:04.306394
___________________________________
###################################
running: checkSaveLoadClumps.py
Kinetic energy OK 1.164931E-09
Kinetic energy OK 1.151232E-01
Kinetic energy OK 1.151462E-01
Kinetic energy OK 1.174632E-01
Status: success, time spent on this check: 0:01:30.646536
___________________________________
###################################
running: DEM-PFV-check.py
DEM-PFV: difference in permeability: 0.044073804895852504 vs. target 0.040399916554
DEM-PFV: difference in final pressure: 612.681692169412 vs. target 628.314160434
DEM-PFV: difference in final deformation -0.002676702421817419 vs. target -0.00258113045083
Status: success, time spent on this check: 0:00:14.210633
___________________________________
###################################
running: checkLiquidMigration.py
Status: success, time spent on this check: 0:00:00.164997
___________________________________
###################################
running: checkMPI.py
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
/usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored.
boot.initialize(plugins,config.confDir)
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107
Status: success, time spent on this check: 0:00:03.764539
___________________________________
###################################
running: checkGravityRungeKuttaCashKarp54.py
checkGravityRungeKuttaCashKarp54.py : yade precision is 15 decimal places. Will use error tolerance of: 1e-12
Note: for high precision calculations use yade.math.toHP1(...) see this:
g = yade.math.toHP1(-9.81) ## produces: -9.81
g = -9.81 ## produces: -9.81
See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info.
<WARNING> GravityEngine:24 virtual void yade::GravityEngine::action(): GravityEngine is deprecated, consider using Newton::gravity instead.
Status: success, time spent on this check: 0:00:00.082308
___________________________________
###################################
running: checkGravity.py
Status: success, time spent on this check: 0:00:03.329603
___________________________________
###################################
running: checkColliderConstantness.py
checkColliderConstantness for InsertionSortCollider
Status: success, time spent on this check: 0:00:00.390193
___________________________________
###################################
running: checkWeight.py
Precalculated weight 756.093387
Obtained weight 756.093387
Status: success, time spent on this check: 0:00:00.125942
___________________________________
###################################
running: checkTestTriax.py
File ./checkTest.yade moved into /tmp/tmphgrhjn5n/ directory
File ./_Unloaded_380_3.spheres moved into /tmp/tmphgrhjn5n/ directory
File ./_Unloaded_380_3.xml moved into /tmp/tmphgrhjn5n/ directory
File ./WallStresses moved into /tmp/tmphgrhjn5n/ directory
Status: success, time spent on this check: 0:00:00.212926
___________________________________
###################################
running: checkClumpHopper.py
Iter 10000: Total number of generated spheres 1448, removed particles 0, current particles 1448, kinEnergy 13755.3
Iter 20000: Total number of generated spheres 2896, removed particles 100, current particles 2796, kinEnergy 32685.4
Iter 30000: Total number of generated spheres 3620, removed particles 484, current particles 3136, kinEnergy 24374.8
Iter 40000: Total number of generated spheres 5068, removed particles 934, current particles 4134, kinEnergy 22952.1
Status: success, time spent on this check: 0:01:29.283312
___________________________________
###################################
running: checkBlockGen.py
Adding slavesThe Block Generation is completed
/usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:83: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
sumVertices = sum( len(b.shape.vertices) for b in O.bodies ) #38 vertices in total
/usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:90: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
a = sum(len(b.shape.a) for b in O.bodies )
/usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:91: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
b = sum(len(b.shape.b) for b in O.bodies )
/usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:92: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
c = sum(len(b.shape.c) for b in O.bodies )
/usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:93: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
d = sum(len(b.shape.d) for b in O.bodies )
/usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:103: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
sumVolume = sum( b.shape.volume for b in O.bodies )
/usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:112: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
sumMass = sum (b.state.mass for b in O.bodies)
/usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:123: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
x = sum( b.state.pos[0]*b.shape.volume for b in O.bodies )/sumVolume
/usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:124: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
y = sum( b.state.pos[1]*b.shape.volume for b in O.bodies )/sumVolume
/usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:125: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
z = sum( b.state.pos[2]*b.shape.volume for b in O.bodies )/sumVolume
Status: success, time spent on this check: 0:00:00.042930
___________________________________
###################################
running: checkPotentialParticles.py
Status: success, time spent on this check: 0:00:00.044981
___________________________________
###################################
running: checkPotentialBlocks.py
Status: success, time spent on this check: 0:00:00.043517
___________________________________
###################################
running: checkCapillaryModels.py
Status: success, time spent on this check: 0:00:00.042101
___________________________________
###################################
running: checkViscElEng.py
Precalculated en value 0.736356797441
Obtained en value 0.736356797441
Status: success, time spent on this check: 0:00:00.403344
___________________________________
###################################
running: checkJCFpm.py
Status: success, time spent on this check: 0:00:06.237038
___________________________________
WARNING: some checks took longer than 30 seconds.
Most time spend on a single check: 0:01:30.646536
*** ALL CHECKS PASSED ***
```
--
You received this question notification because your team yade-users is
an answer contact for Yade.
