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[Blackbug <892836@xxxxxxxxxxxxxxxxxx>]

It looks this problem is specific to 64 bit. I had to install skype:i386 because of libXss.so.1 issue with skype. Till now my skype was running without any problem on 64 bit ( excluding the problem reported in this bug id). But after upgrading to 12.04 libXss.so.1 problem started. I explored launchpad and found a workaround for libXss.so.1 problem
which was:

sudo dpkg --purge skype
sudo apt-get install skype:i386

After installing i386 version, I can see notification icon even after
closing the skype window.

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https://bugs.launchpad.net/bugs/892836

Title:
  In GNOME skype icon missing in notfication area/main panel

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