dhis2-devs team mailing list archive

[Jason Pickering <jason.p.pickering@xxxxxxxxx>]

Hi Gerald,

 I have done all of this already. Sorry, my procedure was not really
detailed enough (kill Tomcat, remove WAR, remove directory in webapps,
download WAR, restart Tomcat)

It is likely a structural problem or metadata problem with my particular
database. On other databases, it works fine. There is just something
peculiar about this database, which the startup routines are not handling
properly.

Regards,
Jason



On Tue, Sep 24, 2013 at 12:50 PM, Gerald Thomas <gerald.81@xxxxxxxxxxx>wrote:

> Jason,
> I had done those procedures before and I had not experience such issues.
> What I think should be done is to stop the tomcat, copy route file
> somewhere else and delete it. Then put the new war file and restart tomcat.
> Sent from my BlackBerry® smartphone from Airtel Sierra Leone
>
> -----Original Message-----
> From: Jason Pickering <jason.p.pickering@xxxxxxxxx>
> Date: Tue, 24 Sep 2013 10:45:10
> To: <gerald.81@xxxxxxxxxxx>
> Cc: <dhis2-devs@xxxxxxxxxxxxxxxxxxx>
> Subject: Re: [Dhis2-devs] Upgrade from 2.10 to 2.12 failing
>
>
>
> Hi Gerald,
>
> There is no procedure for this really other than replacing the WAR file.
> When you move from 2.10 to 2.12, you simply replace the old WAR file with
> the new one,  and the application is supposed to ugprade itself
> automatically. However in this case, it does not , which indicates a
> problem in the startup routines and/or database structure.
>
>
> Regards,
> Jason
>
>
>
>
>
>
>
>
>
> On Tue, Sep 24, 2013 at 12:35 PM, Gerald Thomas <gerald.81@xxxxxxxxxxx<mailto:
> gerald.81@xxxxxxxxxxx> > wrote:
>  You said, you are stuck on step 4/10 which means you have means you have
> an upgrade procedure installation file. That is the file I want you to
> share with me.
>
> Sent from my BlackBerry® smartphone from Airtel Sierra Leone
>
>  -----Original Message-----
>  From: Jason Pickering <jason.p.pickering@xxxxxxxxx <mailto:
> jason.p.pickering@xxxxxxxxx> >
>
> Date: Tue, 24 Sep 2013 10:32:40
>  To: <gerald.81@xxxxxxxxxxx <mailto:gerald.81@xxxxxxxxxxx> >
>  Subject: Re: [Dhis2-devs] Upgrade from 2.10 to 2.12 failing
>
>
>  Hi Gerald,
>  What is a steps file?
>
>
>  Regards,
>  Jason
>
>
>
>
>
>
> On Tue, Sep 24, 2013 at 12:31 PM, Gerald Thomas <gerald.81@xxxxxxxxxxx<mailto:
> gerald.81@xxxxxxxxxxx>  <mailto:gerald.81@xxxxxxxxxxx <mailto:
> gerald.81@xxxxxxxxxxx> > > wrote:
>   Please can you share the steps file you are using with me. Thanks in
> advance.
>   Sent from my BlackBerry® smartphone from Airtel Sierra Leone
>
>
>
>   -----Original Message-----
>
>  From: Jason Pickering <jason.p.pickering@xxxxxxxxx <mailto:
> jason.p.pickering@xxxxxxxxx>  <mailto:jason.p.pickering@xxxxxxxxx <mailto:
> jason.p.pickering@xxxxxxxxx> > >
>   Date: Tue, 24 Sep 2013 10:26:56
>
>
>  To: <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:
> dhis2-devs@xxxxxxxxxxxxxxxxxxx>  <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx<mailto:
> dhis2-devs@xxxxxxxxxxxxxxxxxxx> > >
>   Subject: [Dhis2-devs] Upgrade from 2.10 to 2.12 failing
>
>
>
>   Using the latest 2.12 build from Jenkins.
>
>
>   Looks like something is failing on the startup, but not sure what?
>
>
>   This DB runs fine on 2.10. The first time around, a bunch of timestamps
> were updated. I killed the server, restarted, but still getting stuck at
> step 4 /10.
>
>
>   Any tips?
>
>   Regards,
>   Jason
>
>
>
>
>   * INFO  2013-09-24 11:21:23,080 Found the following message senders:
> [org.hisp.dhis.message.EmailMessageSender@17a220d7,
> org.hisp.dhis.sms.outbound.SmsSender@151a0f60]
> (DefaultMessageService.java [main])
>   * INFO  2013-09-24 11:21:39,093 Camel context started
> (DHIS2LifecycleStrategy.java [main])
>   * INFO  2013-09-24 11:21:39,094 Searching for routes in directory:
> /home/testinstance/dhis_home/routes (DHIS2LifecycleStrategy.java [main])
>   * INFO  2013-09-24 11:21:40,242 Executing startup routine [1 of 10,
> runlevel 1]: TableAlteror (DefaultStartupRoutineExecutor.java [main])
>   * INFO  2013-09-24 11:21:46,749 Tables updated (TableAlteror.java [main])
>   * INFO  2013-09-24 11:21:46,750 Executing startup routine [2 of 10,
> runlevel 1]: MapViewUpgrader (DefaultStartupRoutineExecutor.java [main])
>   * INFO  2013-09-24 11:21:47,012 Executing startup routine [3 of 10,
> runlevel 2]: IdentityPopulator (DefaultStartupRoutineExecutor.java [main])
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.core.StandardContext start
>   SEVERE: Error listenerStart
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.core.StandardContext start
>   SEVERE: Context [/testinstance] startup failed due to previous errors
>   * INFO  2013-09-24 11:21:48,017 De-registering jdbc driver:
> org.h2.Driver@65b8b5cd (StartupListener.java [main])
>   * INFO  2013-09-24 11:21:48,018 De-registering jdbc driver:
> org.hsqldb.jdbc.JDBCDriver@2830803a (StartupListener.java [main])
>   * INFO  2013-09-24 11:21:48,018 De-registering jdbc driver:
> com.mysql.jdbc.Driver@1ccdf3c2 (StartupListener.java [main])
>   * INFO  2013-09-24 11:21:48,018 De-registering jdbc driver:
> org.postgresql.Driver@2f1261b1 (StartupListener.java [main])
>   * INFO  2013-09-24 11:21:48,186 Camel context stopped
> (DHIS2LifecycleStrategy.java [main])
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearReferencesThreads
>   SEVERE: A web application appears to have started a thread named
> [Resource Destroyer in BasicResourcePool.close()] but has failed to stop
> it. This is very likely to create a memory leak.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedThreadLocal] (value [Transactional
> resources]) and a value of type [null] (value [null]) but failed to remove
> it when the web application was stopped. To prevent a memory leak, the
> ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedThreadLocal] (value [Transaction
> synchronizations]) and a value of type [null] (value [null]) but failed to
> remove it when the web application was stopped. To prevent a memory leak,
> the ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedThreadLocal] (value [Prototype beans
> currently in creation]) and a value of type [null] (value [null]) but
> failed to remove it when the web application was stopped. To prevent a
> memory leak, the ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@9db900f]) and a
> value of type
> [org.springframework.security.core.context.SecurityContextImpl] (value
> [org.springframework.security.core.context.SecurityContextImpl@ffffffff:
> Null authentication]) but failed to remove it when the web application was
> stopped. To prevent a memory leak, the ThreadLocal has been forcibly
> removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedThreadLocal] (value [Current transaction
> name]) and a value of type [null] (value [null]) but failed to remove it
> when the web application was stopped. To prevent a memory leak, the
> ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedThreadLocal] (value [Current aspect-driven
> transaction]) and a value of type [null] (value [null]) but failed to
> remove it when the web application was stopped. To prevent a memory leak,
> the ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedThreadLocal] (value [Prototype beans
> currently in creation]) and a value of type [null] (value [null]) but
> failed to remove it when the web application was stopped. To prevent a
> memory leak, the ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedThreadLocal] (value [Locale context]) and a
> value of type [null] (value [null]) but failed to remove it when the web
> application was stopped. To prevent a memory leak, the ThreadLocal has been
> forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedThreadLocal] (value [Current transaction
> read-only status]) and a value of type [null] (value [null]) but failed to
> remove it when the web application was stopped. To prevent a memory leak,
> the ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedThreadLocal] (value [Current transaction
> isolation level]) and a value of type [null] (value [null]) but failed to
> remove it when the web application was stopped. To prevent a memory leak,
> the ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedThreadLocal] (value [Actual transaction
> active]) and a value of type [null] (value [null]) but failed to remove it
> when the web application was stopped. To prevent a memory leak, the
> ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type [null]
> (value [com.sun.xml.bind.v2.ClassFactory$1@642bf5bf]) and a value of type
> [java.util.WeakHashMap] (value [{class
> org.apache.camel.spring.CamelProducerTemplateFactoryBean=java.lang.ref.WeakReference@32b7e05f,
> class
> org.apache.camel.model.PackageScanDefinition=java.lang.ref.WeakReference@45eb96fc,
> class
> javax.xml.bind.annotation.adapters.CollapsedStringAdapter=java.lang.ref.WeakReference@6e059e40,
> class java.util.ArrayList=java.lang.ref.WeakReference@32d8b42e, class
> org.apache.camel.spring.CamelContextFactoryBean=java.lang.ref.WeakReference@311d5216}])
> but failed to remove it when the web application was stopped. To prevent a
> memory leak, the ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedInheritableThreadLocal] (value [Locale
> context]) and a value of type [null] (value [null]) but failed to remove it
> when the web application was stopped. To prevent a memory leak, the
> ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
>   SEVERE: A web application created a ThreadLocal with key of type
> [org.springframework.core.NamedInheritableThreadLocal] (value [Locale
> context]) and a value of type [null] (value [null]) but failed to remove it
> when the web application was stopped. To prevent a memory leak, the
> ThreadLocal has been forcibly removed.
>   Sep 24, 2013 11:21:49 AM org.apache.coyote.http11.Http11AprProtocol start
>   INFO: Starting Coyote HTTP/1.1 on http-8082
>   Sep 24, 2013 11:21:49 AM org.apache.catalina.startup.Catalina start
>    INFO: Server startup in 77181 ms
>