dhis2-devs team mailing list archive

[Calle Hedberg <calle.hedberg@xxxxxxxxx>]

Lars,

Eish - forget about it - was a version startup issue. I accidentally
started up the 2.29 instance using a 2.27 war file. Too much blood in my
caffeinated veins, no doubt.

Regards
Calle



On 9 April 2018 at 11:21, Lars Helge Øverland <lars@xxxxxxxxx> wrote:

> Hi Calle,
>
> this should be handled by the startup routines.
>
> Could it be that you have disabled startup routines and then forgot to
> enable it again when upgrading?
>
> regards,
>
> Lars
>
>
> On 9 April 2018 at 11:18, Calle Hedberg <calle.hedberg@xxxxxxxxx> wrote:
>
>> Hi
>>
>> After recently upgrading from 2.28 to 2.29, I noted that the PeriodType
>> "BiWeekly" has been added to the periodtype table, BUT it generates an
>> error during startup (see tomcat log below). There are also several SEVERE
>> log items at the end related to listeners failing to start - but i cannot
>> see how it affect the system running:
>>
>>
>> * INFO  2018-04-09 11:09:29,180 Executing startup routine [2 of 15,
>> runlevel 2]: PeriodTypePopulator (DefaultStartupRoutineExecutor.java
>> [localhost-startStop-1])
>> * ERROR 2018-04-09 11:09:29,186 org.hibernate.WrongClassException:
>> Object [id=7119265] was not of the specified subclass
>> [org.hisp.dhis.period.PeriodType] : Discriminator: BiWeekly
>>         at org.hibernate.loader.Loader.getInstanceClass(Loader.java:1810)
>>         at org.hibernate.loader.Loader.instanceNotYetLoaded(Loader.java
>> :1621)
>>         at org.hibernate.loader.Loader.getRow(Loader.java:1550)
>>         at org.hibernate.loader.Loader.getRowFromResultSet(Loader.java:
>> 733)
>>         at org.hibernate.loader.Loader.processResultSet(Loader.java:978)
>>         at org.hibernate.loader.Loader.doQuery(Loader.java:936)
>>         at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyColle
>> ctions(Loader.java:342)
>>         at org.hibernate.loader.Loader.doList(Loader.java:2622)
>>         at org.hibernate.loader.Loader.listUsingQueryCache(Loader.java:
>> 2464)
>>         at org.hibernate.loader.Loader.list(Loader.java:2426)
>>         at org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLo
>> ader.java:109)
>>         at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1787)
>>         at org.hibernate.internal.CriteriaImpl.list(CriteriaImpl.java:
>> 363)
>>         at org.hisp.dhis.period.hibernate.HibernatePeriodStore.getAllPe
>> riodTypes(HibernatePeriodStore.java:228)
>>         at org.hisp.dhis.period.PeriodTypePopulator.executeInTransactio
>> n(PeriodTypePopulator.java:66)
>>         at org.hisp.dhis.system.startup.TransactionContextStartupRoutin
>> e$1.doInTransaction(TransactionContextStartupRoutine.java:57)
>>         at org.springframework.transaction.support.TransactionTemplate.
>> execute(TransactionTemplate.java:133)
>>         at org.hisp.dhis.system.startup.TransactionContextStartupRoutin
>> e.execute(TransactionContextStartupRoutine.java:52)
>>         at org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.e
>> xecute(DefaultStartupRoutineExecutor.java:113)
>>         at org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.e
>> xecute(DefaultStartupRoutineExecutor.java:70)
>>         at org.hisp.dhis.system.startup.StartupListener.contextInitiali
>> zed(StartupListener.java:71)
>>         at org.apache.catalina.core.StandardContext.listenerStart(Stand
>> ardContext.java:4745)
>>         at org.apache.catalina.core.StandardContext.startInternal(Stand
>> ardContext.java:5207)
>>         at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.
>> java:150)
>>         at org.apache.catalina.core.ContainerBase.addChildInternal(Cont
>> ainerBase.java:752)
>>         at org.apache.catalina.core.ContainerBase.addChild(ContainerBas
>> e.java:728)
>>         at org.apache.catalina.core.StandardHost.addChild(StandardHost.
>> java:734)
>>         at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.
>> java:988)
>>         at org.apache.catalina.startup.HostConfig$DeployWar.run(HostCon
>> fig.java:1860)
>>         at java.util.concurrent.Executors$RunnableAdapter.call(Unknown
>> Source)
>>         at java.util.concurrent.FutureTask.run(Unknown Source)
>>         at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
>> Source)
>>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
>> Source)
>>         at java.lang.Thread.run(Unknown Source)
>>  (StartupListener.java [localhost-startStop-1])
>> 09-Apr-2018 11:09:29.186 SEVERE [localhost-startStop-1]
>> org.apache.catalina.core.StandardContext.startInternal One or more
>> listeners failed to start. Full details will be found in the appropriate
>> container log file
>> 09-Apr-2018 11:09:29.194 SEVERE [localhost-startStop-1]
>> org.apache.catalina.core.StandardContext.startInternal Context [/dhis]
>> startup failed due to previous errors
>> * INFO  2018-04-09 11:09:29,224 De-registering jdbc driver:
>> org.postgresql.Driver@78fba49a (StartupListener.java
>> [localhost-startStop-1])
>> 09-Apr-2018 11:09:29.354 WARNING [localhost-startStop-1]
>> org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads
>> The web application [dhis] appears to have started a thread named
>> [com.google.inject.internal.util.$Finalizer] but has failed to stop it.
>> This is very likely to create a memory leak. Stack trace of thread:
>>  java.lang.Object.wait(Native Method)
>>  java.lang.ref.ReferenceQueue.remove(Unknown Source)
>>  java.lang.ref.ReferenceQueue.remove(Unknown Source)
>>  com.google.inject.internal.util.$Finalizer.run(Finalizer.java:114)
>> 09-Apr-2018 11:09:29.354 SEVERE [localhost-startStop-1]
>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>> The web application [dhis] created a ThreadLocal with key of type
>> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@9926dd9]) and a
>> value of type [org.hibernate.boot.internal.MetadataImpl] (value
>> [org.hibernate.boot.internal.MetadataImpl@1e8d20a1]) but failed to
>> remove it when the web application was stopped. Threads are going to be
>> renewed over time to try and avoid a probable memory leak.
>> 09-Apr-2018 11:09:29.358 SEVERE [localhost-startStop-1]
>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>> The web application [dhis] created a ThreadLocal with key of type
>> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1a61f7c6]) and a
>> value of type [org.springframework.security.
>> core.context.SecurityContextImpl] (value [org.springframework.security.
>> core.context.SecurityContextImpl@ffffffff: Null authentication]) but
>> failed to remove it when the web application was stopped. Threads are going
>> to be renewed over time to try and avoid a probable memory leak.
>> 09-Apr-2018 11:09:29.384 INFO [localhost-startStop-1]
>> org.apache.catalina.startup.HostConfig.deployWAR Deployment of web
>> application archive [C:\Program Files\Apache Software Foundation\Tomcat
>> 8.5\webapps\dhis.war] has finished in [52,168] ms
>>
>> Any advice on the reason for this and/or how to fix it?
>>
>> Regards
>> Calle
>>
>> *******************************************
>>
>> Calle Hedberg
>>
>> 46D Alma Road, 7700 Rosebank, SOUTH AFRICA
>> <https://maps.google.com/?q=46D+Alma+Road,+7700+Rosebank,+SOUTH+AFRICA&entry=gmail&source=g>
>>
>> Tel/fax (home): +27-21-685-6472
>>
>> Cell: +27-82-853-5352
>>
>> Iridium SatPhone: +8816-315-19119
>>
>> Email: calle.hedberg@xxxxxxxxx
>>
>> Skype: calle_hedberg
>>
>> *******************************************
>>
>>
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>>
>
>
> --
> Lars Helge Øverland
> Technical lead, DHIS 2
> University of Oslo
> lars@xxxxxxxxx
> https://www.dhis2.org
>
>


-- 

*******************************************

Calle Hedberg

46D Alma Road, 7700 Rosebank, SOUTH AFRICA

Tel/fax (home): +27-21-685-6472

Cell: +27-82-853-5352

Iridium SatPhone: +8816-315-19119

Email: calle.hedberg@xxxxxxxxx

Skype: calle_hedberg

*******************************************