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Re: Fwd: Re: [Dhis2-devs] Exception with Mysql database in version 2.21

To: dhis2-users@xxxxxxxxxxxxxxxxxxx
From: Knut Staring <knutst@xxxxxxxxx>
Date: Tue, 8 Dec 2015 07:04:27 +0100
In-reply-to: <CAL=8=Nh=uYGj8-0hhAi7QL0E73MZjXtN2WeNwnjeg4nPTirM1g@mail.gmail.com>
But I assume you ran all the Sql update scripts?
On 8 Dec 2015 07:02, "Knut Staring" <knutst@xxxxxxxxx> wrote:

> ---------- Forwarded message ----------
> From: "Neeraj Gupta" <neeraj.hisp@xxxxxxxxx>
> Date: 8 Dec 2015 06:54
> Subject: Re: [Dhis2-devs] Exception with Mysql database in version 2.21
> To: "Knut Staring" <knutst@xxxxxxxxx>
> Cc:
>
> Thanks for replying Knut.
>
> We upgraded directly from 2.16 to 2.21. But the errors seems more database
> related
>
> For example if we see drop _orgunitstructure query, it should be dropped
> irrespective of versions.
>
> On Mon, Dec 7, 2015 at 6:24 PM, Knut Staring <knutst@xxxxxxxxx> wrote:
>
>> You upgraded directly? Or step by step (2.17, 2.18...)
>>
>> On Mon, Dec 7, 2015 at 1:52 PM, Neeraj Gupta <neeraj.hisp@xxxxxxxxx>
>> wrote:
>>
>>> Dear All,
>>>
>>> We recently upgraded DHIS 2.16 to 2.21 where database is Mysql some of
>>> the errors are listed below, can someone please guide us?*(We are using
>>> aggregated data not tracker)*
>>>
>>> Error1:
>>> In mysql *programrule *table is not created automatically. While
>>> starting getting the below error:
>>>
>>>
>>> * ERROR 2015-12-07 17:36:56,864 Problem updating: programrule, id
>>> column: programruleid (IdentityPopulator.java [localho
>>> st-startStop-1])
>>> org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad
>>> SQL grammar [SELECT * from programrule WHERE uid
>>>  IS NULL]; nested exception is
>>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table
>>> 'dhis.programrule'
>>>  doesn't exist
>>>         at
>>> org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
>>> lator.java:231)
>>>         at
>>> org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
>>> nTranslator.java:73)
>>>         at
>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
>>>         at
>>> org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:471)
>>>         at
>>> org.springframework.jdbc.core.JdbcTemplate.queryForRowSet(JdbcTemplate.java:526)
>>>         at
>>> org.hisp.dhis.common.IdentityPopulator.execute(IdentityPopulator.java:86)
>>>         at
>>> org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:117)
>>>         at
>>> org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:86)
>>>         at
>>> org.hisp.dhis.system.startup.StartupListener.contextInitialized(StartupListener.java:71)
>>>         at
>>> org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4729)
>>>         at
>>> org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5167)
>>>         at
>>> org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
>>>         at
>>> org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)
>>>         at
>>> org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
>>>         at
>>> org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
>>>         at
>>> org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945)
>>>         at
>>> org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1768)
>>>         at java.util.concurrent.Executors$RunnableAdapter.call(Unknown
>>> Source)
>>>         at java.util.concurrent.FutureTask.run(Unknown Source)
>>>         at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
>>> Source)
>>>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
>>> Source)
>>>         at java.lang.Thread.run(Unknown Source)
>>> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException:
>>> Table 'dhis.programrule' doesn't exist
>>>         at
>>> sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
>>>         at
>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
>>>         at java.lang.reflect.Constructor.newInstance(Unknown Source)
>>>         at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
>>>         at com.mysql.jdbc.Util.getInstance(Util.java:360)
>>>         at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
>>>         at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
>>>         at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
>>>         at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
>>>         at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
>>>         at
>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
>>>         at
>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
>>>         at
>>> com.mysql.jdbc.StatementImpl.executeQuery(StatementImpl.java:1446)
>>>         at
>>> com.mchange.v2.c3p0.impl.NewProxyStatement.executeQuery(NewProxyStatement.java:35)
>>>         at
>>> org.springframework.jdbc.core.JdbcTemplate$1QueryStatementCallback.doInStatement(JdbcTemplate.java:455)
>>>         at
>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
>>>         ... 19 more
>>> * INFO  2015-12-07 17:36:57,144 Executing startup routine [6 of 13,
>>> runlevel 5]: TableCreator (DefaultStartupRoutineExec
>>> utor.java [localhost-startStop-1])
>>>
>>>
>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>
>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>
>>> Error2: While generating resource tables got the below error, think the
>>> query should be *DROP TABLE IF EXISTS _orgunitstructure;  Same applies
>>> for all resource tables.*
>>>
>>> * INFO  2015-12-07 17:41:06,417 [Level: INFO, category:
>>> RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messag
>>> e: Generating resource tables] (InMemoryNotifier.java [taskScheduler-1])
>>> * INFO  2015-12-07 17:41:06,465 Create table SQL: create table
>>> _orgunitstructure_temp (organisationunitid integer not nu
>>> ll primary key, organisationunituid character(11), level integer,
>>> `idlevel1` integer, `uidlevel1` character(11), `idleve
>>> l2` integer, `uidlevel2` character(11), `idlevel3` integer, `uidlevel3`
>>> character(11)); (JdbcResourceTableStore.java [ta
>>> skScheduler-1])
>>> * INFO  2015-12-07 17:41:06,495 Populate table content rows: 203
>>> (JdbcResourceTableStore.java [taskScheduler-1])
>>> * INFO  2015-12-07 17:41:06,546 Create index SQL: create unique index
>>> in_orgunitstructure_organisationunituid_VWU2G on _
>>> orgunitstructure_temp(organisationunituid) (JdbcResourceTableStore.java
>>> [taskScheduler-1])
>>> * INFO  2015-12-07 17:41:06,582 [Level: ERROR, category:
>>> RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messa
>>> ge: Process failed: StatementCallback; bad SQL grammar [drop table
>>> _orgunitstructure;]; nested exception is com.mysql.jd
>>> bc.exceptions.jdbc4.MySQLSyntaxErrorException: Unknown table
>>> 'dhis._orgunitstructure'] (InMemoryNotifier.java [tas
>>> kScheduler-1])
>>>
>>>
>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>
>>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>
>>> Error3: Tried to copy resource table structures from old db and tried
>>> generate resource table option, this time got the below error:
>>>
>>> * INFO  2015-12-07 18:05:19,296 [Level: ERROR, category:
>>> RESOURCETABLE_UPDATE, time: Mon Dec 07 18:05:19 IST 2015, messa
>>> ge: Process failed: StatementCallback; bad SQL grammar [create unique
>>> index in_dataelementstructure_dataelementuid_M86c6
>>>  on _dataelementstructure_temp(dataelementuid);create index
>>> in_dataelementstructure_datasetid_fVMFF on _dataelementstruc
>>> ture_temp(datasetid);create index
>>> in_dataelementstructure_datasetuid_nsdEu on
>>> _dataelementstructure_temp(datasetuid);cre
>>> ate index in_dataelementstructure_periodtypeid_EkjZg on
>>> _dataelementstructure_temp(periodtypeid);]; nested exception is
>>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an
>>> error in your SQL syntax; check the manual that c
>>> orresponds to your MySQL server version for the right syntax to use near
>>> 'create index in_dataelementstructure_datasetid
>>> _fVMFF on _dataelementstructure_te' at line 1] (InMemoryNotifier.java
>>> [taskScheduler-5])
>>> * ERROR 2015-12-07 18:05:19,319 Unexpected error occurred in scheduled
>>> task. (TaskUtils.java [taskScheduler-5])
>>> org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad
>>> SQL grammar [create unique index in_dataelements
>>> tructure_dataelementuid_M86c6 on
>>> _dataelementstructure_temp(dataelementuid);create index
>>> in_dataelementstructure_dataset
>>> id_fVMFF on _dataelementstructure_temp(datasetid);create index
>>> in_dataelementstructure_datasetuid_nsdEu on _dataelements
>>> tructure_temp(datasetuid);create index
>>> in_dataelementstructure_periodtypeid_EkjZg on
>>> _dataelementstructure_temp(periodty
>>> peid);]; nested exception is
>>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an
>>> error in your SQL sy
>>> ntax; check the manual that corresponds to your MySQL server version for
>>> the right syntax to use near 'create index in_d
>>> ataelementstructure_datasetid_fVMFF on _dataelementstructure_te' at line
>>> 1
>>>         at
>>> org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
>>> lator.java:231)
>>>         at
>>> org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
>>> nTranslator.java:73)
>>>         at
>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
>>>         at
>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:440)
>>>         at
>>> org.hisp.dhis.resourcetable.jdbc.JdbcResourceTableStore.generateResourceTable(JdbcResourceTableStore.java:118
>>> )
>>>         at
>>> org.hisp.dhis.resourcetable.DefaultResourceTableService.generateDataElementTable(DefaultResourceTableService.
>>> java:198)
>>>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>         at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>>>         at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
>>> Source)
>>>         at java.lang.reflect.Method.invoke(Unknown Source)
>>>         at
>>> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
>>>         at
>>> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:
>>> 190)
>>>         at
>>> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
>>>         at
>>> org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterce
>>> ptor.java:99)
>>>         at
>>> org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspec
>>> tSupport.java:281)
>>>         at
>>> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
>>>         at
>>> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
>>>         at
>>> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
>>>         at com.sun.proxy.$Proxy143.generateDataElementTable(Unknown
>>> Source)
>>>         at
>>> org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.generateAll(ResourceTableTask.java:121)
>>>         at
>>> org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.run(ResourceTableTask.java:84)
>>>         at
>>> org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.ja
>>> va:54)
>>>         at java.util.concurrent.Executors$RunnableAdapter.call(Unknown
>>> Source)
>>>         at java.util.concurrent.FutureTask.run(Unknown Source)
>>>         at
>>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(Unknown
>>> Source)
>>>         at
>>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown
>>> Source)
>>>         at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
>>> Source)
>>>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
>>> Source)
>>>         at java.lang.Thread.run(Unknown Source)
>>> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException:
>>> You have an error in your SQL syntax; check the ma
>>> nual that corresponds to your MySQL server version for the right syntax
>>> to use near 'create index in_dataelementstructur
>>> e_datasetid_fVMFF on _dataelementstructure_te' at line 1
>>>         at
>>> sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
>>>         at
>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
>>>         at java.lang.reflect.Constructor.newInstance(Unknown Source)
>>>         at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
>>>         at com.mysql.jdbc.Util.getInstance(Util.java:360)
>>>         at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
>>>         at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
>>>         at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
>>>         at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
>>>         at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
>>>         at
>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
>>>         at
>>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
>>>         at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:848)
>>>         at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:742)
>>>         at
>>> com.mchange.v2.c3p0.impl.NewProxyStatement.execute(NewProxyStatement.java:1006)
>>>         at
>>> org.springframework.jdbc.core.JdbcTemplate$1ExecuteStatementCallback.doInStatement(JdbcTemplate.java:432)
>>>         at
>>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
>>>         ... 26 more
>>>
>>> --
>>> Thanks,
>>> Neeraj Gupta
>>>
>>> _______________________________________________
>>> Mailing list: https://launchpad.net/~dhis2-devs
>>> Post to     : dhis2-devs@xxxxxxxxxxxxxxxxxxx
>>> Unsubscribe : https://launchpad.net/~dhis2-devs
>>> More help   : https://help.launchpad.net/ListHelp
>>>
>>>
>>
>>
>> --
>> Knut Staring
>> Dept. of Informatics, University of Oslo
>> Norway: +4791880522
>> Skype: knutstar
>> http://dhis2.org
>>
>
>
>
> --
> Thanks,
> Neeraj Gupta
>
Follow ups

Re: Fwd: Re: [Dhis2-devs] Exception with Mysql database in version 2.21
From: Neeraj Gupta, 2015-12-08
References

Fwd: Re: [Dhis2-devs] Exception with Mysql database in version 2.21
From: Knut Staring, 2015-12-08