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Message #08773
Fwd: Re: [Dhis2-devs] Exception with Mysql database in version 2.21
---------- Forwarded message ----------
From: "Neeraj Gupta" <neeraj.hisp@xxxxxxxxx>
Date: 8 Dec 2015 06:54
Subject: Re: [Dhis2-devs] Exception with Mysql database in version 2.21
To: "Knut Staring" <knutst@xxxxxxxxx>
Cc:
Thanks for replying Knut.
We upgraded directly from 2.16 to 2.21. But the errors seems more database
related
For example if we see drop _orgunitstructure query, it should be dropped
irrespective of versions.
On Mon, Dec 7, 2015 at 6:24 PM, Knut Staring <knutst@xxxxxxxxx> wrote:
> You upgraded directly? Or step by step (2.17, 2.18...)
>
> On Mon, Dec 7, 2015 at 1:52 PM, Neeraj Gupta <neeraj.hisp@xxxxxxxxx>
> wrote:
>
>> Dear All,
>>
>> We recently upgraded DHIS 2.16 to 2.21 where database is Mysql some of
>> the errors are listed below, can someone please guide us?*(We are using
>> aggregated data not tracker)*
>>
>> Error1:
>> In mysql *programrule *table is not created automatically. While
>> starting getting the below error:
>>
>>
>> * ERROR 2015-12-07 17:36:56,864 Problem updating: programrule, id
>> column: programruleid (IdentityPopulator.java [localho
>> st-startStop-1])
>> org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad
>> SQL grammar [SELECT * from programrule WHERE uid
>> IS NULL]; nested exception is
>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table
>> 'dhis.programrule'
>> doesn't exist
>> at
>> org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
>> lator.java:231)
>> at
>> org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
>> nTranslator.java:73)
>> at
>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
>> at
>> org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:471)
>> at
>> org.springframework.jdbc.core.JdbcTemplate.queryForRowSet(JdbcTemplate.java:526)
>> at
>> org.hisp.dhis.common.IdentityPopulator.execute(IdentityPopulator.java:86)
>> at
>> org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:117)
>> at
>> org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:86)
>> at
>> org.hisp.dhis.system.startup.StartupListener.contextInitialized(StartupListener.java:71)
>> at
>> org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4729)
>> at
>> org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5167)
>> at
>> org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
>> at
>> org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)
>> at
>> org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
>> at
>> org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
>> at
>> org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945)
>> at
>> org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1768)
>> at java.util.concurrent.Executors$RunnableAdapter.call(Unknown
>> Source)
>> at java.util.concurrent.FutureTask.run(Unknown Source)
>> at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
>> Source)
>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
>> Source)
>> at java.lang.Thread.run(Unknown Source)
>> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException:
>> Table 'dhis.programrule' doesn't exist
>> at sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown
>> Source)
>> at
>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
>> at java.lang.reflect.Constructor.newInstance(Unknown Source)
>> at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
>> at com.mysql.jdbc.Util.getInstance(Util.java:360)
>> at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
>> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
>> at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
>> at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
>> at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
>> at
>> com.mysql.jdbc.StatementImpl.executeQuery(StatementImpl.java:1446)
>> at
>> com.mchange.v2.c3p0.impl.NewProxyStatement.executeQuery(NewProxyStatement.java:35)
>> at
>> org.springframework.jdbc.core.JdbcTemplate$1QueryStatementCallback.doInStatement(JdbcTemplate.java:455)
>> at
>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
>> ... 19 more
>> * INFO 2015-12-07 17:36:57,144 Executing startup routine [6 of 13,
>> runlevel 5]: TableCreator (DefaultStartupRoutineExec
>> utor.java [localhost-startStop-1])
>>
>>
>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>
>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>
>> Error2: While generating resource tables got the below error, think the
>> query should be *DROP TABLE IF EXISTS _orgunitstructure; Same applies
>> for all resource tables.*
>>
>> * INFO 2015-12-07 17:41:06,417 [Level: INFO, category:
>> RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messag
>> e: Generating resource tables] (InMemoryNotifier.java [taskScheduler-1])
>> * INFO 2015-12-07 17:41:06,465 Create table SQL: create table
>> _orgunitstructure_temp (organisationunitid integer not nu
>> ll primary key, organisationunituid character(11), level integer,
>> `idlevel1` integer, `uidlevel1` character(11), `idleve
>> l2` integer, `uidlevel2` character(11), `idlevel3` integer, `uidlevel3`
>> character(11)); (JdbcResourceTableStore.java [ta
>> skScheduler-1])
>> * INFO 2015-12-07 17:41:06,495 Populate table content rows: 203
>> (JdbcResourceTableStore.java [taskScheduler-1])
>> * INFO 2015-12-07 17:41:06,546 Create index SQL: create unique index
>> in_orgunitstructure_organisationunituid_VWU2G on _
>> orgunitstructure_temp(organisationunituid) (JdbcResourceTableStore.java
>> [taskScheduler-1])
>> * INFO 2015-12-07 17:41:06,582 [Level: ERROR, category:
>> RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messa
>> ge: Process failed: StatementCallback; bad SQL grammar [drop table
>> _orgunitstructure;]; nested exception is com.mysql.jd
>> bc.exceptions.jdbc4.MySQLSyntaxErrorException: Unknown table
>> 'dhis._orgunitstructure'] (InMemoryNotifier.java [tas
>> kScheduler-1])
>>
>>
>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>
>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>
>> Error3: Tried to copy resource table structures from old db and tried
>> generate resource table option, this time got the below error:
>>
>> * INFO 2015-12-07 18:05:19,296 [Level: ERROR, category:
>> RESOURCETABLE_UPDATE, time: Mon Dec 07 18:05:19 IST 2015, messa
>> ge: Process failed: StatementCallback; bad SQL grammar [create unique
>> index in_dataelementstructure_dataelementuid_M86c6
>> on _dataelementstructure_temp(dataelementuid);create index
>> in_dataelementstructure_datasetid_fVMFF on _dataelementstruc
>> ture_temp(datasetid);create index
>> in_dataelementstructure_datasetuid_nsdEu on
>> _dataelementstructure_temp(datasetuid);cre
>> ate index in_dataelementstructure_periodtypeid_EkjZg on
>> _dataelementstructure_temp(periodtypeid);]; nested exception is
>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an
>> error in your SQL syntax; check the manual that c
>> orresponds to your MySQL server version for the right syntax to use near
>> 'create index in_dataelementstructure_datasetid
>> _fVMFF on _dataelementstructure_te' at line 1] (InMemoryNotifier.java
>> [taskScheduler-5])
>> * ERROR 2015-12-07 18:05:19,319 Unexpected error occurred in scheduled
>> task. (TaskUtils.java [taskScheduler-5])
>> org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad
>> SQL grammar [create unique index in_dataelements
>> tructure_dataelementuid_M86c6 on
>> _dataelementstructure_temp(dataelementuid);create index
>> in_dataelementstructure_dataset
>> id_fVMFF on _dataelementstructure_temp(datasetid);create index
>> in_dataelementstructure_datasetuid_nsdEu on _dataelements
>> tructure_temp(datasetuid);create index
>> in_dataelementstructure_periodtypeid_EkjZg on
>> _dataelementstructure_temp(periodty
>> peid);]; nested exception is
>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an
>> error in your SQL sy
>> ntax; check the manual that corresponds to your MySQL server version for
>> the right syntax to use near 'create index in_d
>> ataelementstructure_datasetid_fVMFF on _dataelementstructure_te' at line 1
>> at
>> org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
>> lator.java:231)
>> at
>> org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
>> nTranslator.java:73)
>> at
>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
>> at
>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:440)
>> at
>> org.hisp.dhis.resourcetable.jdbc.JdbcResourceTableStore.generateResourceTable(JdbcResourceTableStore.java:118
>> )
>> at
>> org.hisp.dhis.resourcetable.DefaultResourceTableService.generateDataElementTable(DefaultResourceTableService.
>> java:198)
>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>> at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>> at java.lang.reflect.Method.invoke(Unknown Source)
>> at
>> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
>> at
>> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:
>> 190)
>> at
>> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
>> at
>> org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterce
>> ptor.java:99)
>> at
>> org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspec
>> tSupport.java:281)
>> at
>> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
>> at
>> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
>> at
>> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
>> at com.sun.proxy.$Proxy143.generateDataElementTable(Unknown
>> Source)
>> at
>> org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.generateAll(ResourceTableTask.java:121)
>> at
>> org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.run(ResourceTableTask.java:84)
>> at
>> org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.ja
>> va:54)
>> at java.util.concurrent.Executors$RunnableAdapter.call(Unknown
>> Source)
>> at java.util.concurrent.FutureTask.run(Unknown Source)
>> at
>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(Unknown
>> Source)
>> at
>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown
>> Source)
>> at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
>> Source)
>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
>> Source)
>> at java.lang.Thread.run(Unknown Source)
>> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You
>> have an error in your SQL syntax; check the ma
>> nual that corresponds to your MySQL server version for the right syntax
>> to use near 'create index in_dataelementstructur
>> e_datasetid_fVMFF on _dataelementstructure_te' at line 1
>> at sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown
>> Source)
>> at
>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
>> at java.lang.reflect.Constructor.newInstance(Unknown Source)
>> at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
>> at com.mysql.jdbc.Util.getInstance(Util.java:360)
>> at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
>> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
>> at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
>> at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
>> at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
>> at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:848)
>> at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:742)
>> at
>> com.mchange.v2.c3p0.impl.NewProxyStatement.execute(NewProxyStatement.java:1006)
>> at
>> org.springframework.jdbc.core.JdbcTemplate$1ExecuteStatementCallback.doInStatement(JdbcTemplate.java:432)
>> at
>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
>> ... 26 more
>>
>> --
>> Thanks,
>> Neeraj Gupta
>>
>> _______________________________________________
>> Mailing list: https://launchpad.net/~dhis2-devs
>> Post to : dhis2-devs@xxxxxxxxxxxxxxxxxxx
>> Unsubscribe : https://launchpad.net/~dhis2-devs
>> More help : https://help.launchpad.net/ListHelp
>>
>>
>
>
> --
> Knut Staring
> Dept. of Informatics, University of Oslo
> Norway: +4791880522
> Skype: knutstar
> http://dhis2.org
>
--
Thanks,
Neeraj Gupta
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