dolfin team mailing list archive

[Alireza Forghani <arforghani@xxxxxxxxx>]

Hi Garth,

I did:

[alireza@master alireza]$ env |grep PETSC_DIR
PETSC_DIR=/data/alireza/petsc-2.3.1-p11

It might be because I haven't installed MPI on my account and didn't disable it during configuration of MPI. may be it uses MPI of another account?

Alireza

------------------------
Date: Fri, 07 Apr 2006 21:25:12 +0200
From: "Garth N. Wells" <g.n.wells@xxxxxxxxxx>
Subject: Re: [DOLFIN-dev] Problems with compiling DOLFIN on Redhat
To: Discussion of DOLFIN development <dolfin-dev@xxxxxxxxxx>
Message-ID: <1144437912.8606.2.camel@localhost.localdomain>
Content-Type: text/plain

What do you see if you do

 >env | grep PETSC_DIR ?

Garth


On Fri, 2006-04-07 at 10:22 -0700, Alireza Forghani wrote:

> > Hi Anders,
> > 
> > Configuration says:
> > 
> > using PETSC_DIR=/data/alireza/petsc-2.3.1-p11
> > disabling compilation of PyDOLFIN
> > checking for configarch... yes
> > 
> > but exactly after that when I try to compile demo the error appears:
> > 
> > 
> > /data/daan/FeNics/petsc-2.3.1-p2: Permission denied
> > /data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel: Permission denied
> > /data/daan/FeNics/petsc-2.3.1-p2/include: Permission denied
> > /data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni: Permission denied
> > /data/daan/FeNics/petsc-2.3.1-p2: Permission denied
> > /data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel: Permission denied
> > /data/daan/FeNics/petsc-2.3.1-p2/include: Permission denied
> > /data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni: Permission denied
> > make[3]: *** [main.o] Error 1
> > 
> > As you see it tries to use another library.
> > 
> > I also used:
> > 
> > export PATH="data/alireza/dolfin0.6.1/local/bin:$PATH"
> > 
> > and these are what exactly PETSc says after configuration:
> > 
> > =================================================================================
> >              Configuring PETSc to compile on your system                         
> > =================================================================================
> > Compilers:                                                                                                                                                                        
> >   C Compiler:         mpicc  -fPIC -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -g3 
> >   Fortran Compiler:   mpif77  -fPIC -Wall -g  
> > Linkers:
> >   Shared linker:   mpicc  -shared  -fPIC -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -g3 
> >   Dynamic linker:   mpicc  -shared  -fPIC -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -g3 
> > PETSc:
> >   **
> >   ** Before running "make" your PETSC_ARCH must be specified with:
> >   **  ** setenv PETSC_ARCH linux-gnu-c-real-debug (csh/tcsh)
> >   **  ** PETSC_ARCH=linux-gnu-c-real-debug; export PETSC_ARCH (sh/bash)
> >   **
> >   PETSC_DIR: /data/alireza/petsc-2.3.1-p11
> >   **
> >   ** Now build and test the libraries with "make all test"
> >   **
> >   Scalar type:real
> >   Clanguage: C
> > MPI:
> >   PETSc shared libraries: disabled
> >   PETSc dynamic libraries: disabled
> > X11:
> >   Includes: ['-I/usr/X11R6/include']
> >   Library: ['-L/usr/X11R6/lib -lX11']
> > BLAS/LAPACK: -Wl,-rpath,/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug -L/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug -lflapack -Wl,-rpath,/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug -L/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug -lfblas
> > 
> > 
> > Thank You,
> > Alireza