dolfin team mailing list archive

Thread
Date

Re: Problems with compiling DOLFIN on Redhat

To: Discussion of DOLFIN development <dolfin-dev@xxxxxxxxxx>
From: Alireza Forghani <arforghani@xxxxxxxxx>
Date: Fri, 07 Apr 2006 15:15:26 -0700
In-reply-to: <4436D859.1060208@gmail.com>
Reply-to: Discussion of DOLFIN development <dolfin-dev@xxxxxxxxxx>
User-agent: Thunderbird 1.5 (Windows/20051201)

I downloaded and installed locally but problem remains.
when I type "dolfin-config --cflags"

it returns:

-I/usr/local/include -I../../src/kernel/common -I../../src/kernel/fem-I../../src/kernel/form -I../../src/kernel/function-I../../src/kernel/io -I../../src/kernel/la -I../../src/kernel/main-I../../src/kernel/math -I../../src/kernel/mesh -I../../src/kernel/nls-I../../src/kernel/ode -I../../src/kernel/pde-I../../src/kernel/quadrature -I../../src/kernel/parameter-I../../src/kernel/log -I/data/daan/FeNics/petsc-2.3.1-p2-I/data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel-I/data/daan/FeNics/petsc-2.3.1-p2/include-I/data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni-I/usr/local/mpich/default/include -I/usr/include/libxml2-I../../src/modules/elasticity -I../../src/modules/elasticity-updated-I../../src/modules/convdiff -I../../src/modules/navierstokes-I../../src/modules/poisson -I../../src/modules/stokes-I../../src/modules/heat -I../../src/kernel/common-I../../src/kernel/fem -I../../src/kernel/form-I../../src/kernel/function -I../../src/kernel/io -I../../src/kernel/la-I../../src/kernel/main -I../../src/kernel/math -I../../src/kernel/mesh-I../../src/kernel/nls -I../../src/kernel/ode -I../../src/kernel/pde-I../../src/kernel/quadrature -I../../src/kernel/parameter-I../../src/kernel/log -I/data/daan/FeNics/petsc-2.3.1-p2-I/data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel-I/data/daan/FeNics/petsc-2.3.1-p2/include-I/data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni-I/usr/local/mpich/default/include -I/usr/include/libxml2-I../../src/modules/



also "dolfin-config --libs" returns:

As you see every thing related to PETSC is assigned to "/data/daan...."instead of "data/alireza/PETSC...."



Alireza Forghani wrote:

Hi Garth,

I did:

[alireza@master alireza]$ env |grep PETSC_DIR
PETSC_DIR=/data/alireza/petsc-2.3.1-p11
It might be because I haven't installed MPI on my account and didn'tdisable it during configuration of MPI. may be it uses MPI of anotheraccount?
Alireza

------------------------
Date: Fri, 07 Apr 2006 21:25:12 +0200
From: "Garth N. Wells" <g.n.wells@xxxxxxxxxx>
Subject: Re: [DOLFIN-dev] Problems with compiling DOLFIN on Redhat
To: Discussion of DOLFIN development <dolfin-dev@xxxxxxxxxx>
Message-ID: <1144437912.8606.2.camel@localhost.localdomain>
Content-Type: text/plain

What do you see if you do

 >env | grep PETSC_DIR ?

Garth


On Fri, 2006-04-07 at 10:22 -0700, Alireza Forghani wrote:
> Hi Anders,
> > Configuration says:
> > using PETSC_DIR=/data/alireza/petsc-2.3.1-p11
> disabling compilation of PyDOLFIN
> checking for configarch... yes
> > but exactly after that when I try to compile demo the error appears:
> > > /data/daan/FeNics/petsc-2.3.1-p2: Permission denied
> /data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel: Permissiondenied
> /data/daan/FeNics/petsc-2.3.1-p2/include: Permission denied
> /data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni: Permission denied
> /data/daan/FeNics/petsc-2.3.1-p2: Permission denied
> /data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel: Permissiondenied
> /data/daan/FeNics/petsc-2.3.1-p2/include: Permission denied
> /data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni: Permission denied
> make[3]: *** [main.o] Error 1
> > As you see it tries to use another library.
> > I also used:
> > export PATH="data/alireza/dolfin0.6.1/local/bin:$PATH"
> > and these are what exactly PETSc says after configuration:
> >=================================================================================> Configuring PETSc to compile on yoursystem >=================================================================================>Compilers:> C Compiler: mpicc -fPIC -Wall -Wshadow -Wwrite-strings-fomit-frame-pointer -g3 > Fortran Compiler: mpif77 -fPIC -Wall-g > Linkers:> Shared linker: mpicc -shared -fPIC -Wall -Wshadow-Wwrite-strings -fomit-frame-pointer -g3 > Dynamic linker: mpicc-shared -fPIC -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer-g3 > PETSc:
>   **
>   ** Before running "make" your PETSC_ARCH must be specified with:
>   **  ** setenv PETSC_ARCH linux-gnu-c-real-debug (csh/tcsh)
> ** ** PETSC_ARCH=linux-gnu-c-real-debug; export PETSC_ARCH(sh/bash)
>   **
>   PETSC_DIR: /data/alireza/petsc-2.3.1-p11
>   **
>   ** Now build and test the libraries with "make all test"
>   **
>   Scalar type:real
>   Clanguage: C
> MPI:
>   PETSc shared libraries: disabled
>   PETSc dynamic libraries: disabled
> X11:
>   Includes: ['-I/usr/X11R6/include']
>   Library: ['-L/usr/X11R6/lib -lX11']
> BLAS/LAPACK:-Wl,-rpath,/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug-L/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug-lflapack-Wl,-rpath,/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug-L/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug-lfblas
> > > Thank You,
> Alireza
_______________________________________________
DOLFIN-dev mailing list
DOLFIN-dev@xxxxxxxxxx
http://www.fenics.org/cgi-bin/mailman/listinfo/dolfin-dev

Follow ups

Re: Problems with compiling DOLFIN on Redhat
From: Anders Logg, 2006-04-07

References

Re: Problems with compiling DOLFIN on Redhat
From: Alireza Forghani, 2006-04-07