dolfin team mailing list archive

[Anders Logg <logg@xxxxxxxxx>]

When you have large attachments, try putting the files on the web
somewhere and post the URL. That way anyone who is interested can look
at the files and everyone else don't need to get too many bytes in
their inbox... :-)

/Anders


On Mon, Oct 23, 2006 at 11:22:36AM -0400, Naboulsi, Samir K CTR USAF ASC/HP wrote:
> I submitted this e-mail to the dolfin-dev@xxxxxxxxxx however, I recieved an
> automated e-mail stating
> 
> Your mail to 'DOLFIN-dev' with the subject
> 
>     Install Dolfin
> 
> 
> is being held until the list moderator can review it for deletion or
> approval. Don't expect this to happen very soon.
> 
> 
> It also state that the size is too big, since I have submitted the config and
> make files to give you more detail of the problem. The original message is
> shown below. I am new to FEnics and not sure how things are normally done.
> Please advise.
> 
> Thank you and best regards
> Sam
> 
> 
> -----Original Message-----
> From: Naboulsi, Samir K CTR USAF ASC/HP
> Sent: Thu 10/19/2006 4:02 PM
> To: dolfin-dev@xxxxxxxxxx
> Subject: Install Dolfin
> 
> 
> 
> I am having difficulties installing dolfin on my machine. I do not have root
> privileges, and I have done the following:
> 
> 1- installed Python-2.4.1 and tested it (roots has version 2.3)
> 2- installed Numeric-24.2 numarray-1.5.2 and numpy-1.0b5 and tested them
> 3- installed FIAT-0.2.5 FErari-0.0.1 and ffc-0.3.3 and tested them
> 4- installed boost_1_33_1 lib locally
> 5- Libxml2 and PETSc are installed on the machine by root, also an older
> version of boost lib exist
> 6 tried to installed Dolfin using the options:
> 
> >> ./configure --prefix=/workspace/naboulsk/FX/local --with-boost-include=/
> workspace/naboulsk/FX/local/include/boost-1_33_1/boost
> 
> However I get errors running the configure if I use the python2.4 version but
> not python2.3.
> If I use python2.3 I get errors during make that I think it has to do with the
> root installed boost version even though I am using the --with-boost-include?
> 
> I am including the files  config.status Makefile config.log
> 
> Could you please advise of a solution to my problem.
> Thanks and best regards
> Sam
> 
> 
> ERRORS USING PYTHON2.4
> 
> checking for xml2-config... /usr/bin/xml2-config
> checking for libxml - version >= 2.0.0... yes (version 2.6.16)
> checking boost/version.hpp usability... yes
> checking boost/version.hpp presence... yes
> checking for boost/version.hpp... yes
> checking for amd_info in -lamd... no
> Cannot find amd library (part of umfpack). Umfpack will be disabled
> checking for a Python interpreter with version >= 2.3... python2.4
> checking for python2.4... /workspace/naboulsk/FX/local/bin/python2.4
> checking for python2.4 version... 2.4
> checking for python2.4 platform... linux2
> checking for python2.4 script directory... ${prefix}/lib/python2.4/
> site-packages
> checking for python2.4 extension module directory... ${exec_prefix}/lib/
> python2.4/site-packages
> checking for Python include path... /workspace/naboulsk/FX/local/include/
> python2.4
> checking for Python library path... /workspace/naboulsk/FX/local/lib/python2.4/
> config
> checking python extra libraries...
> checking python2.4/Python.h usability... no
> checking python2.4/Python.h presence... no
> checking for python2.4/Python.h... no
> *** Cannot find Python development files on your system.
> *** Perhaps you need to install the package python2.4-dev?
> 
> 
> ERRORS IN MAKE FILE
> 
> /workspace/naboulsk/FX/dolfin-0.6.2-1> make
> Making all in src
> make[1]: Entering directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src'
> Making all in pre
> make[2]: Entering directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/pre'
> rm -f ../config/dolfin-config
> make[2]: Leaving directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/pre'
> Making all in kernel
> make[2]: Entering directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel'
> Making all in common
> make[3]: Entering directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> common'
> Making all in dolfin
> make[4]: Entering directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> common/dolfin'
> make[4]: Nothing to be done for `all'.
> make[4]: Leaving directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> common/dolfin'
> make[4]: Entering directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> common'
> make[4]: Nothing to be done for `all-am'.
> make[4]: Leaving directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> common'
> make[3]: Leaving directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> common'
> Making all in fem
> make[3]: Entering directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> fem'
> Making all in dolfin
> make[4]: Entering directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> fem/dolfin'
> make[4]: Nothing to be done for `all'.
> make[4]: Leaving directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> fem/dolfin'
> make[4]: Entering directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> fem'
> if /bin/sh ../../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\
> "DOLFIN\" -DPACKAGE_TARNAME=\"dolfin\" -DPACKAGE_VERSION=\"0.6.2-1\"
> -DPACKAGE_STRING=\"DOLFIN\ 0.6.2-1\" -DPACKAGE_BUGREPORT=\"dolfin@xxxxxxxxxx\"
> -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1
> -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
> -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1  -I. -I. -I../../../src/
> kernel/common -I../../../src/kernel/fem -I../../../src/kernel/form -I../../../
> src/kernel/function -I../../../src/kernel/io -I../../../src/kernel/la -I../..
> /../src/kernel/main -I../../../src/kernel/math -I../../../src/kernel/mesh -I..
> /../../src/kernel/mf -I../../../src/kernel/nls -I../../../src/kernel/ode -I..
> /../../src/kernel/pde -I../../../src/kernel/quadrature -I../../../src/kernel/
> parameter -I../../../src/kernel/log   -I/usr/include/libxml2      -g -O2
> -DNDEBUG -pedantic -Wno-long-long -std=c++98 -fPIC -MT FEM.lo -MD -MP -MF
> ".deps/FEM.Tpo" -c -o FEM.lo FEM.cpp; \
> then mv -f ".deps/FEM.Tpo" ".deps/FEM.Plo"; else rm -f ".deps/FEM.Tpo"; exit 1;
> fi
>  g++ -DPACKAGE_NAME=\"DOLFIN\" -DPACKAGE_TARNAME=\"dolfin\" -DPACKAGE_VERSION=\
> "0.6.2-1\" "-DPACKAGE_STRING=\"DOLFIN 0.6.2-1\"" -DPACKAGE_BUGREPORT=\
> "dolfin@xxxxxxxxxx\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1
> -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
> -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I.
> -I. -I../../../src/kernel/common -I../../../src/kernel/fem -I../../../src/
> kernel/form -I../../../src/kernel/function -I../../../src/kernel/io -I../../../
> src/kernel/la -I../../../src/kernel/main -I../../../src/kernel/math -I../../../
> src/kernel/mesh -I../../../src/kernel/mf -I../../../src/kernel/nls -I../../../
> src/kernel/ode -I../../../src/kernel/pde -I../../../src/kernel/quadrature -I..
> /../../src/kernel/parameter -I../../../src/kernel/log -I/usr/include/libxml2 -g
> -O2 -DNDEBUG -pedantic -Wno-long-long -std=c++98 -fPIC -MT FEM.lo -MD -MP -MF
> .deps/FEM.Tpo -c FEM.cpp  -fPIC -DPIC -o .libs/FEM.o
> In file included from ../../../src/kernel/la/dolfin/ublas.h:12,
>                  from ../../../src/kernel/la/dolfin/uBlasMatrix.h:18,
>                  from ../../../src/kernel/la/dolfin/uBlasDenseMatrix.h:10,
>                  from ../../../src/kernel/la/dolfin/DenseMatrix.h:12,
>                  from ./dolfin/FEM.h:18,
>                  from FEM.cpp:10:
> /usr/include/boost/numeric/ublas/vector_of_vector.hpp:17:2: #error class
> generalized_vector_of_vector is experiment and currently does not work
> In file included from ../../../src/kernel/la/dolfin/ublas.h:12,
>                  from ../../../src/kernel/la/dolfin/uBlasMatrix.h:18,
>                  from ../../../src/kernel/la/dolfin/uBlasDenseMatrix.h:10,
>                  from ../../../src/kernel/la/dolfin/DenseMatrix.h:12,
>                  from ./dolfin/FEM.h:18,
>                  from FEM.cpp:10:
> /usr/include/boost/numeric/ublas/vector_of_vector.hpp:1203: error: declaration
> of `class T'
> /usr/include/boost/numeric/ublas/vector_of_vector.hpp:32: error:  shadows
> template parm `class T'
> /usr/include/boost/numeric/ublas/vector_of_vector.hpp:1203: error: declaration
> of `class F'
> /usr/include/boost/numeric/ublas/vector_of_vector.hpp:32: error:  shadows
> template parm `class F'
> /usr/include/boost/numeric/ublas/vector_of_vector.hpp:1203: error: declaration
> of `class A'
> /usr/include/boost/numeric/ublas/vector_of_vector.hpp:32: error:  shadows
> template parm `class A'
> /usr/include/boost/numeric/ublas/vector_of_vector.hpp:1208: error: type
> `boost::numeric::ublas::generalized_vector_of_vector<T, F, A>' is not derived
> from type `boost::numeric::ublas::generalized_vector_of_vector<T, F, A>'
> /usr/include/boost/numeric/ublas/vector_of_vector.hpp:1208: error: ISO C++
> forbids initialization of member
> ....................
> ...............
> .........FEM.cpp:216: error: 'const class boost::numeric::dolfin::LinearForm'
> has no member named 'test'
> FEM.cpp:217: error: `boost::numeric::dolfin::LogManager' has not been declared
> FEM.cpp:217: error: request for member `error' in `log', which is of non-class
> type `double ()(double) throw ()'
> FEM.cpp:220: error: 'const class boost::numeric::dolfin::LinearForm' has no
> member named 'test'
> FEM.cpp:221: error: `boost::numeric::dolfin::LogManager' has not been declared
> FEM.cpp:221: error: request for member `error' in `log', which is of non-class
> type `double ()(double) throw ()'
> FEM.cpp:224: error: `boost::numeric::dolfin::LogManager' has not been declared
> FEM.cpp:224: error: request for member `error' in `log', which is of non-class
> type `double ()(double) throw ()'
> FEM.cpp: At global scope:
> FEM.cpp:228: error: expected constructor, destructor, or type conversion before
> "FEM"
> FEM.cpp:238: error: expected `,' or `...' before '&' token
> FEM.cpp:239: error: ISO C++ forbids declaration of `GenericMatrix' with no type
> FEM.cpp: In static member function `static void
> boost::numeric::dolfin::FEM::countNonZeros(int)':
> FEM.cpp:240: error: `A' was not declared in this scope
> FEM.cpp:241: error: `nz' was not declared in this scope
> FEM.cpp:242: error: `boost::numeric::dolfin::LogManager' has not been declared
> FEM.cpp:242: error: request for member `warning' in `log', which is of
> non-class type `double ()(double) throw ()'
> FEM.cpp:245: error: `dolfin_info' was not declared in this scope
> FEM.cpp: At global scope:
> FEM.cpp:246: error: expected `}' at end of input
> FEM.cpp:246: error: expected `}' at end of input
> make[4]: *** [FEM.lo] Error 1
> make[4]: Leaving directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> fem'
> make[3]: *** [all-recursive] Error 1
> make[3]: Leaving directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel/
> fem'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src/kernel'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/workspace/naboulsk/FX/dolfin-0.6.2-1/src'
> make: *** [all-recursive] Error 1
> 
> 
> 
> 
>