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Re: pydolfin error

To: Gideon Simpson <grs2103@xxxxxxxxxxxx>
From: Ola Skavhaug <skavhaug@xxxxxxxxx>
Date: Sat, 16 Feb 2008 02:25:10 +0100
Cc: dolfin-dev@xxxxxxxxxx
Delivered-to: dolfin-dev@xxxxxxxxxx
In-reply-to: <69894181-430A-45EC-8A90-D495B08B7C81@columbia.edu>
Mail-followup-to: Ola Skavhaug <skavhaug@xxxxxxxxx>, Gideon Simpson <grs2103@xxxxxxxxxxxx>, dolfin-dev@xxxxxxxxxx
User-agent: Mutt/1.5.15+20070412 (2007-04-11)
Gideon Simpson skrev den 15/02-2008 følgende:
> having pulled the latest repositories of everything, i'm getting the  
> following error when it comes time for pydoflin:

You need to touch the interface file:

touch src/pydolfin/dolfin.i
make && make install

This is a flaw in the build system in DOLFIN, and should be resolved as soon
as the new SCons build system is in place.

Ola
 
>   mpicxx -DPACKAGE_NAME=\"DOLFIN\" -DPACKAGE_TARNAME=\"dolfin\" - 
> DPACKAGE_VERSION=\"0.7.1\" "-DPACKAGE_STRING=\"DOLFIN 0.7.1\"" - 
> DPACKAGE_BUGREPORT=\"http://www.fenics.org/bugzilla/\"; - 
> DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 - 
> DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 - 
> DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 - 
> DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_BOOST= -DHAVE_UMFPACK_H=1 -I.  
> -I/System/Library/Frameworks/Python.framework/Versions/2.5/include/ 
> python2.5 -I../../src/kernel/common -I../../src/kernel/elements - 
> I../../src/kernel/fem -I../../src/kernel/function -I../../src/kernel/ 
> graph -I../../src/kernel/io -I../../src/kernel/la -I../../src/kernel/ 
> main -I../../src/kernel/math -I../../src/kernel/mesh -I../../src/ 
> kernel/mf -I../../src/kernel/nls -I../../src/kernel/ode -I../../src/ 
> kernel/pde -I../../src/kernel/quadrature -I../../src/kernel/parameter - 
> I../../src/kernel/log -I../../src/kernel/plot -I/opt/petsc-2.3.3-p8/ 
> bmake/darwin9.1.0-cxx-debug -I/opt/petsc-2.3.3-p8/include -I/opt/ 
> include -I/opt/include -I/opt/include -I/opt/slepc-2.3.3 -I/opt/ 
> slepc-2.3.3/include -I/opt/include/boost-1_34_1 -I/sw/include/libxml2 - 
> I/sw/include -I/opt/petsc-2.3.3-p8/externalpackages/UMFPACKv4.3/ 
> darwin9.1.0-cxx-debug/UMFPACK/Include -I/sw/include/glib-2.0 -I/sw/lib/ 
> glib-2.0/include -I/opt/include -I../../src/pydolfin -I/System/Library/ 
> Frameworks/Python.framework/Versions/2.5/include/python2.5 -I/opt/lib/ 
> python2.5/site-packages/numpy/core/include -DHAVE_MPI_H=1 - 
> DMPICH_IGNORE_CXX_SEEK -DHAVE_SLEPC_H=1 -DHAVE_PETSC_H=1 -DNDEBUG -g - 
> O2 -fno-strict-aliasing -Wall -Werror -ansi -Wno-uninitialized -MT  
> _dolfin_la-dolfin_wrap.lo -MD -MP -MF .deps/_dolfin_la-dolfin_wrap.Tpo  
> -c dolfin_wrap.cpp  -fno-common -DPIC -o .libs/_dolfin_la-dolfin_wrap.o
> dolfin_wrap.cpp: In function 'PyObject* _wrap_add(PyObject*,  
> PyObject*)':
> dolfin_wrap.cpp:27560: error: 'add' is not a member of 'dolfin'
> dolfin_wrap.cpp: In function 'PyObject* _wrap_set__SWIG_0(PyObject*,  
> PyObject*)':
> dolfin_wrap.cpp:27624: error: 'set' is not a member of 'dolfin'
> dolfin_wrap.cpp: In function 'PyObject* _wrap_set__SWIG_1(PyObject*,  
> PyObject*)':
> dolfin_wrap.cpp:27682: error: 'set' is not a member of 'dolfin'
> dolfin_wrap.cpp: In function 'PyObject* _wrap_get(PyObject*,  
> PyObject*)':
> dolfin_wrap.cpp:27776: error: 'get' is not a member of 'dolfin'
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_0(PyObject*, PyObject*)':
> dolfin_wrap.cpp:85644: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:85644: error: 'arg3' was not declared in this scope
> dolfin_wrap.cpp:85680: error: expected type-specifier
> dolfin_wrap.cpp:85680: error: expected `>'
> dolfin_wrap.cpp:85680: error: expected `('
> dolfin_wrap.cpp:85680: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:85680: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:85680: error: expected `)' before ';' token
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_1(PyObject*, PyObject*)':
> dolfin_wrap.cpp:85721: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:85721: error: 'arg3' was not declared in this scope
> dolfin_wrap.cpp:85753: error: expected type-specifier
> dolfin_wrap.cpp:85753: error: expected `>'
> dolfin_wrap.cpp:85753: error: expected `('
> dolfin_wrap.cpp:85753: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:85753: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:85753: error: expected `)' before ';' token
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_2(PyObject*, PyObject*)':
> dolfin_wrap.cpp:85789: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:85789: error: 'arg3' was not declared in this scope
> dolfin_wrap.cpp:85829: error: expected type-specifier
> dolfin_wrap.cpp:85829: error: expected `>'
> dolfin_wrap.cpp:85829: error: expected `('
> dolfin_wrap.cpp:85829: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:85829: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:85829: error: expected `)' before ';' token
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_3(PyObject*, PyObject*)':
> dolfin_wrap.cpp:85878: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:85878: error: 'arg3' was not declared in this scope
> dolfin_wrap.cpp:85914: error: expected type-specifier
> dolfin_wrap.cpp:85914: error: expected `>'
> dolfin_wrap.cpp:85914: error: expected `('
> dolfin_wrap.cpp:85914: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:85914: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:85914: error: expected `)' before ';' token
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_4(PyObject*, PyObject*)':
> dolfin_wrap.cpp:85958: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:85958: error: 'arg3' was not declared in this scope
> dolfin_wrap.cpp:86006: error: expected type-specifier
> dolfin_wrap.cpp:86006: error: expected `>'
> dolfin_wrap.cpp:86006: error: expected `('
> dolfin_wrap.cpp:86006: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:86006: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:86006: error: expected `)' before ';' token
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_5(PyObject*, PyObject*)':
> dolfin_wrap.cpp:86071: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:86071: error: 'arg3' was not declared in this scope
> dolfin_wrap.cpp:86115: error: expected type-specifier
> dolfin_wrap.cpp:86115: error: expected `>'
> dolfin_wrap.cpp:86115: error: expected `('
> dolfin_wrap.cpp:86115: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:86115: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:86115: error: expected `)' before ';' token
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_6(PyObject*, PyObject*)':
> dolfin_wrap.cpp:86174: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:86174: error: 'arg2' was not declared in this scope
> dolfin_wrap.cpp:86196: error: expected type-specifier
> dolfin_wrap.cpp:86196: error: expected `>'
> dolfin_wrap.cpp:86196: error: expected `('
> dolfin_wrap.cpp:86196: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:86196: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:86196: error: expected `)' before ';' token
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_7(PyObject*, PyObject*)':
> dolfin_wrap.cpp:86231: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:86231: error: 'arg2' was not declared in this scope
> dolfin_wrap.cpp:86257: error: expected type-specifier
> dolfin_wrap.cpp:86257: error: expected `>'
> dolfin_wrap.cpp:86257: error: expected `('
> dolfin_wrap.cpp:86257: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:86257: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:86257: error: expected `)' before ';' token
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_8(PyObject*, PyObject*)':
> dolfin_wrap.cpp:86300: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:86300: error: 'arg2' was not declared in this scope
> dolfin_wrap.cpp:86334: error: expected type-specifier
> dolfin_wrap.cpp:86334: error: expected `>'
> dolfin_wrap.cpp:86334: error: expected `('
> dolfin_wrap.cpp:86334: error: 'pForm' is not a member of 'dolfin'
> dolfin_wrap.cpp:86334: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:86334: error: expected `)' before ';' token
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_9(PyObject*, PyObject*)':
> dolfin_wrap.cpp:86396: error: 'pDofMapSet' is not a member of 'dolfin'
> dolfin_wrap.cpp:86396: error: 'arg5' was not declared in this scope
> dolfin_wrap.cpp:86466: error: expected type-specifier
> dolfin_wrap.cpp:86466: error: expected `>'
> dolfin_wrap.cpp:86466: error: expected `('
> dolfin_wrap.cpp:86466: error: 'pDofMapSet' is not a member of 'dolfin'
> dolfin_wrap.cpp:86466: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:86466: error: expected `)' before ';' token
> dolfin_wrap.cpp:86489: error: 'pDofMapSet' is not a member of 'dolfin'
> dolfin_wrap.cpp:86489: error: expected `)' before 'const'
> dolfin_wrap.cpp: In function 'PyObject*  
> _wrap_pAssembler_assemble__SWIG_10(PyObject*, PyObject*)':
> dolfin_wrap.cpp:86524: error: 'pDofMapSet' is not a member of 'dolfin'
> dolfin_wrap.cpp:86524: error: 'arg5' was not declared in this scope
> dolfin_wrap.cpp:86590: error: expected type-specifier
> dolfin_wrap.cpp:86590: error: expected `>'
> dolfin_wrap.cpp:86590: error: expected `('
> dolfin_wrap.cpp:86590: error: 'pDofMapSet' is not a member of 'dolfin'
> dolfin_wrap.cpp:86590: error: expected primary-expression before '>'  
> token
> dolfin_wrap.cpp:86590: error: expected `)' before ';' token
> dolfin_wrap.cpp:86608: error: 'pDofMapSet' is not a member of 'dolfin'
> dolfin_wrap.cpp:86608: error: expected `)' before 'const'
> make[3]: *** [_dolfin_la-dolfin_wrap.lo] Error 1
> make[2]: *** [all] Error 2
> make[1]: *** [all-recursive] Error 1
> make: *** [all-recursive] Error 1
> 
> _______________________________________________
> DOLFIN-dev mailing list
> DOLFIN-dev@xxxxxxxxxx
> http://www.fenics.org/mailman/listinfo/dolfin-dev
Follow ups

Re: pydolfin error
From: Gideon Simpson, 2008-02-16
References

pydolfin error
From: Gideon Simpson, 2008-02-16