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Re: Trilinos-8.0.7

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Johan Hake wrote:

Hello!
There have been reported some trubles with compiling trilinos. Especially version 8.0.5. I have now downloaded 8.0.7 and compiled this without problems, on Ubuntu Hardy. 
Both with and without mpi.

Compile flags for MPI:
../configure --prefix=<install_dir> --enable-shared --enable-pytrilinos\ --enable-pliris --enable-didasko --enable-amesos --enable-anasazi\ --enable-default-packages --enable-galeri --with-cflags=-fPIC\ 
 --with-cxxflags=-fPIC --with-fflags=-fPIC --with-ldflags=-fPIC\
 --with-ccflags=-fPIC --enable-triutils --enable-aztecoo-teuchos\
 --enable-mpi --with-mpi-compilers --with-gnumake -C



Unfortunately this didn't work for me. I get a bunch of errors.

Garth

Teuchos_wrap.o: In function `typecode_string(int)':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3124: multiple definition of `typecode_string(int)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:3877: first defined here 
Teuchos_wrap.o: In function `type_match(int, int)':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3141: multiple definition of `type_match(int, int)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:3894: first defined here 
Teuchos_wrap.o: In function `SWIG_TypePrettyName':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:486: multiple definition of `PyTrilinos' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:487: first defined here Teuchos_wrap.o: In function `make_contiguous(PyArrayObject*, int*, int, int)': /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3211: multiple definition of `make_contiguous(PyArrayObject*, int*, int, int)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:3964: first defined here 
Teuchos_wrap.o: In function `require_native(PyArrayObject*)':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3278: multiple definition of `require_native(PyArrayObject*)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:4031: first defined here 
Teuchos_wrap.o: In function `require_contiguous(PyArrayObject*)':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3262: multiple definition of `require_contiguous(PyArrayObject*)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:4015: first defined here 
Teuchos_wrap.o: In function `require_dimensions(PyArrayObject*, int)':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3295: multiple definition of `require_dimensions(PyArrayObject*, int)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:4048: first defined here Teuchos_wrap.o: In function `obj_to_array_allow_conversion(_object*, int, int*)': /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3185: multiple definition of `obj_to_array_allow_conversion(_object*, int, int*)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:3938: first defined here Teuchos_wrap.o: In function `obj_to_array_contiguous_allow_conversion(_object*, int, int*)': /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3237: multiple definition of `obj_to_array_contiguous_allow_conversion(_object*, int, int*)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:3990: first defined here 
Teuchos_wrap.o: In function `Finalize()':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:4341: multiple definition of `Finalize()' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:4764: first defined here 
Teuchos_wrap.o: In function `Init_Argv(_object*)':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:4298: multiple definition of `Init_Argv(_object*)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:4721: first defined here 
Teuchos_wrap.o: In function `require_size(PyArrayObject*, int*, int)':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3346: multiple definition of `require_size(PyArrayObject*, int*, int)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:4099: first defined here Teuchos_wrap.o: In function `require_dimensions_n(PyArrayObject*, int*, int)': /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3313: multiple definition of `require_dimensions_n(PyArrayObject*, int*, int)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:4066: first defined here 
Teuchos_wrap.o: In function `pytype_string(_object*)':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3105: multiple definition of `pytype_string(_object*)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:3858: first defined here 
Teuchos_wrap.o: In function `obj_to_array_no_conversion(_object*, int)':
/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Teuchos_wrap.cpp:3150: multiple definition of `obj_to_array_no_conversion(_object*, int)' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src/Epetra_wrap.cpp:3903: first defined here 
Teuchos_wrap.o: In function `SWIG_TypePrettyName':
/usr/local/include/openmpi/ompi/mpi/cxx/win_inln.h:118: multiple definition of `NumPyImporter::m_singleton' Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/epetra/src/Epetra_Util.h:179: first defined here 
collect2: ld returned 1 exit status
Traceback (most recent call last):
  File "./setup.py", line 172, in <module>
    ###################
  File "./setup.py", line 148, in main
    # Build the init file
  File "../util/SharedUtils.py", line 475, in buildShared
    SharedTrilinosBuilder.buildShared(self)
  File "../util/SharedUtils.py", line 330, in buildShared
    runCommand(self.linkCmd)
  File "../util/SharedUtils.py", line 97, in runCommand
    if status: raise RuntimeError, "Exit status = %d" % status
RuntimeError: Exit status = 256





Compile flags for serial:
../configure --prefix=<install_dir> --enable-shared --enable-pytrilinos\ --enable-pliris --enable-didasko --enable-amesos --enable-anasazi\ --enable-default-packages --enable-galeri --with-cflags=-fPIC\ 
 --with-cxxflags=-fPIC --with-fflags=-fPIC --with-ldflags=-fPIC\
 --with-ccflags=-fPIC --enable-triutils --enable-aztecoo-teuchos\
 --with-gnumake -C

Have fun!

Johan
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