dolfin team mailing list archive

[Johan Hake <hake@xxxxxxxxx>]

On Thursday 26 June 2008 16:49:41 Garth N. Wells wrote:
> Johan Hake wrote:
> > Hello!
> >
> > There have been reported some trubles with compiling trilinos. Especially
> > version 8.0.5. I have now downloaded 8.0.7 and compiled this without
> > problems, on Ubuntu Hardy.
> >
> > Both with and without mpi.
> >
> > Compile flags for MPI:
> > ../configure --prefix=<install_dir> --enable-shared --enable-pytrilinos\
> >  --enable-pliris --enable-didasko --enable-amesos --enable-anasazi\
> >  --enable-default-packages --enable-galeri --with-cflags=-fPIC\
> >  --with-cxxflags=-fPIC --with-fflags=-fPIC --with-ldflags=-fPIC\
> >  --with-ccflags=-fPIC --enable-triutils --enable-aztecoo-teuchos\
> >  --enable-mpi --with-mpi-compilers --with-gnumake -C
>
> Unfortunately this didn't work for me. I get a bunch of errors.

To bad!

I remembered that I had some problems with the Teuchos package. It is 
unfortunately almost impossible to debug the swig generated wrapper code.

I used the swig version that comes with hardy, i.e., 1.3.33 and for the MPI 
version I used the updated openmpi package that comes with hardy.

Johan

> Garth
>
> Teuchos_wrap.o: In function `typecode_string(int)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3124: multiple definition of `typecode_string(int)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:3877: first defined here
> Teuchos_wrap.o: In function `type_match(int, int)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3141: multiple definition of `type_match(int, int)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:3894: first defined here
> Teuchos_wrap.o: In function `SWIG_TypePrettyName':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:486: multiple definition of `PyTrilinos'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:487: first defined here
> Teuchos_wrap.o: In function `make_contiguous(PyArrayObject*, int*, int,
> int)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3211: multiple definition of
> `make_contiguous(PyArrayObject*, int*, int, int)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:3964: first defined here
> Teuchos_wrap.o: In function `require_native(PyArrayObject*)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3278: multiple definition of
> `require_native(PyArrayObject*)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:4031: first defined here
> Teuchos_wrap.o: In function `require_contiguous(PyArrayObject*)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3262: multiple definition of
> `require_contiguous(PyArrayObject*)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:4015: first defined here
> Teuchos_wrap.o: In function `require_dimensions(PyArrayObject*, int)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3295: multiple definition of
> `require_dimensions(PyArrayObject*, int)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:4048: first defined here
> Teuchos_wrap.o: In function `obj_to_array_allow_conversion(_object*,
> int, int*)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3185: multiple definition of
> `obj_to_array_allow_conversion(_object*, int, int*)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:3938: first defined here
> Teuchos_wrap.o: In function
> `obj_to_array_contiguous_allow_conversion(_object*, int, int*)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3237: multiple definition of
> `obj_to_array_contiguous_allow_conversion(_object*, int, int*)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:3990: first defined here
> Teuchos_wrap.o: In function `Finalize()':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:4341: multiple definition of `Finalize()'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:4764: first defined here
> Teuchos_wrap.o: In function `Init_Argv(_object*)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:4298: multiple definition of `Init_Argv(_object*)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:4721: first defined here
> Teuchos_wrap.o: In function `require_size(PyArrayObject*, int*, int)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3346: multiple definition of `require_size(PyArrayObject*,
> int*, int)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:4099: first defined here
> Teuchos_wrap.o: In function `require_dimensions_n(PyArrayObject*, int*,
> int)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3313: multiple definition of
> `require_dimensions_n(PyArrayObject*, int*, int)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:4066: first defined here
> Teuchos_wrap.o: In function `pytype_string(_object*)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3105: multiple definition of `pytype_string(_object*)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:3858: first defined here
> Teuchos_wrap.o: In function `obj_to_array_no_conversion(_object*, int)':
> /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src
>/Teuchos_wrap.cpp:3150: multiple definition of
> `obj_to_array_no_conversion(_object*, int)'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos
>/shared/../src/Epetra_wrap.cpp:3903: first defined here
> Teuchos_wrap.o: In function `SWIG_TypePrettyName':
> /usr/local/include/openmpi/ompi/mpi/cxx/win_inln.h:118: multiple
> definition of `NumPyImporter::m_singleton'
> Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/epetra/src
>/Epetra_Util.h:179: first defined here
> collect2: ld returned 1 exit status
> Traceback (most recent call last):
>    File "./setup.py", line 172, in <module>
>      ###################
>    File "./setup.py", line 148, in main
>      # Build the init file
>    File "../util/SharedUtils.py", line 475, in buildShared
>      SharedTrilinosBuilder.buildShared(self)
>    File "../util/SharedUtils.py", line 330, in buildShared
>      runCommand(self.linkCmd)
>    File "../util/SharedUtils.py", line 97, in runCommand
>      if status: raise RuntimeError, "Exit status = %d" % status
> RuntimeError: Exit status = 256
>
> > Compile flags for serial:
> > ../configure --prefix=<install_dir> --enable-shared --enable-pytrilinos\
> >  --enable-pliris --enable-didasko --enable-amesos --enable-anasazi\
> >  --enable-default-packages --enable-galeri --with-cflags=-fPIC\
> >  --with-cxxflags=-fPIC --with-fflags=-fPIC --with-ldflags=-fPIC\
> >  --with-ccflags=-fPIC --enable-triutils --enable-aztecoo-teuchos\
> >  --with-gnumake -C
> >
> > Have fun!
> >
> > Johan
> > _______________________________________________
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> > DOLFIN-dev@xxxxxxxxxx
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