dolfin team mailing list archive

["Johannes Ring" <johannr@xxxxxxxxx>]

On Fri, September 19, 2008 10:19, Niclas Jansson wrote:
> Johannes Ring wrote:
>> On Thu, September 18, 2008 19:43, Anders Logg wrote:
>>> On Thu, Sep 18, 2008 at 06:52:30PM +0200, Johannes Ring wrote:
>>>> On Thu, September 18, 2008 18:35, Anders Logg wrote:
>>>>> We need to add a test/pkgconfig-generator for ParMETIS.
>>>>>
>>>>> I can build the test program in sandbox/passembly but I need to add
>>>>>
>>>>>   customCxxFlags=-DHAS_PARMETIS=1
>>>>>
>>>>> to scons when building DOLFIN and then manually add
>>>>>
>>>>>   -lparmetis -lmetis
>>>>>
>>>>> when linking the demo.
>>>>>
>>>>> Can someone who knows the build system better add this?
>>>> I can do that.
>>> Thanks.
>>>
>>>> Do you use the libparmetis-dev package that comes with
>>>> Ubuntu or do you build ParMETIS yourself?
>>> I use the Ubuntu package.
>>
>> I have the pkg-config generator for ParMETIS ready but building DOLFIN
>> fails with the following error message:
>>
>> mpic++ -o dolfin/mesh/MeshPartition.os -c -Wall -pipe -ansi -DDEBUG -g
>> -Werror -DNDEBUG -O2 -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK
>> -DPACKAGE_VERSION=\"0.8.0\" -DHAS_PETSC=1 -DHAS_SLEPC=1 -DHAS_SCOTCH=1
>> -DHAS_UMFPACK=1 -DHAS_GTS=1 -DHAS_TRILINOS=1 -DHAS_CHOLMOD=1
>> -DHAS_MTL4=1
>> -DHAS_PARMETIS=1 -fPIC -I. -I/usr/local/include -I/usr/include/libxml2
>> -I/usr/lib/petsc/bmake/linux-gnu-c-opt -I/usr/lib/petsc/include
>> -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -Idolfin
>> -I/home/johannr/src/slepc-2.3.3 -I/home/johannr/src/slepc-2.3.3/include
>> -I/usr/lib/petsc/bmake/linux-gnu-c-opt -I/usr/lib/petsc/include
>> -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -Idolfin
>> -I/home/johannr/src/scotch_5.0/bin -I/usr/include/suitesparse
>> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include
>> -I/home/johannr/src/trilinos-8.0.3/local/include
>> -I/usr/include/suitesparse -I/home/johannr/src/svn/mtl4
>> dolfin/mesh/MeshPartition.cpp
>> dolfin/mesh/MeshPartition.cpp: In static member function ?static void
>> dolfin::MeshPartition::partitionGeom(dolfin::Mesh&,
>> dolfin::MeshFunction<unsigned int>&)?:
>> dolfin/mesh/MeshPartition.cpp:102: error: ?idxtype? was not declared in
>> this scope
>> dolfin/mesh/MeshPartition.cpp:102: error: ?vtxdist? was not declared in
>> this scope
>> dolfin/mesh/MeshPartition.cpp:102: error: expected type-specifier before
>> ?idxtype?
>> dolfin/mesh/MeshPartition.cpp:102: error: expected `;' before ?idxtype?
>> dolfin/mesh/MeshPartition.cpp:103: error: expected type-specifier before
>> ?idxtype?
>> dolfin/mesh/MeshPartition.cpp:103: error: expected `>' before ?idxtype?
>> dolfin/mesh/MeshPartition.cpp:103: error: expected `(' before ?idxtype?
>> dolfin/mesh/MeshPartition.cpp:103: error: expected `)' before ?;? token
>> dolfin/mesh/MeshPartition.cpp:117: error: expected `;' before ?gdim?
>> dolfin/mesh/MeshPartition.cpp:118: error: ?part? was not declared in
>> this
>> scope
>> dolfin/mesh/MeshPartition.cpp:118: error: expected type-specifier before
>> ?idxtype?
>> dolfin/mesh/MeshPartition.cpp:118: error: expected `;' before ?idxtype?
>> dolfin/mesh/MeshPartition.cpp:119: error: ?gdim? was not declared in
>> this
>> scope
>> dolfin/mesh/MeshPartition.cpp:134: error: ?ParMETIS_V3_PartGeom? was not
>> declared in this scope
>> dolfin/mesh/MeshPartition.cpp:143: error: type ?<type error>? argument
>> given to ?delete?, expected pointer
>> dolfin/mesh/MeshPartition.cpp:144: error: type ?<type error>? argument
>> given to ?delete?, expected pointer
>> scons: *** [dolfin/mesh/MeshPartition.os] Error 1
>> scons: building terminated because of errors.
>>
>> Any ideas?
>>
>> Johannes
>>
>
> Seams like it doesn't find parmetis.h

Yes, it seems so, but parmetis.h is located under /usr/include so it can't
be missed. And it doesn't fail on this part of MeshPartition.cpp:

#ifdef HAS_PARMETIS
#include <parmetis.h>
#endif

Johannes

> Niclas
>
>>> --
>>> Anders
>>> _______________________________________________
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>>>
>>
>>
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