dolfin team mailing list archive

[Ilmar Wilbers <ilmarw@xxxxxxxxx>]

Thsi seems to be a related issue:
http://www.selenic.com/pipermail/mercurial/2008-May/019081.html

ilmar

Ilmar Wilbers wrote:
> All these seem to have happened with a hg mv.
> http://www.selenic.com/mercurial/wiki/index.cgi/FixingMissingRevlog 
> indicates how to fix this. However, such a fix would not be a revision 
> of itself, I think, so if run on the central repository, it probably 
> would have to be run by all before hey check in anything else, I am not 
> sure.
>
> Tried to run this conver, however, symlinking src->dolfin (revision 
> 1127) and later replacing it with a src folder made the convert fail:
> 1127 Added src symlink.
> abort: Is a directory: /Users/ilmarw/tmp/dolfin-fix/src
>
> These errors were not detected by earlier versions of hg, but they seem 
> genuine.
>
> ilmar
>
> Shawn Walker wrote:
> > I just updated my dolfin to the current version and I get the same 
> > verify errors:
> >
> > walker@box227 ~/FENICS/dolfin
> > $ hg verify
> > checking changesets
> > checking manifests
> > crosschecking files in changesets and manifests
> > checking files
> >  demo/pde/dg/poisson/python/demo.py.orig@4147: empty or missing copy 
> > source revlog demo/pde/dg/python/demo.py.orig:000000000000
> >  src/demo/mesh/partitioning/cpp/dolfin-mesh-partition-demo@3223: copy 
> > source revision is nullid 
> > src/demo/mesh/partitioning/dolfin-mesh-partition-demo:000000000000
> >  src/demo/mesh/partitioning/cpp/dolfin-mesh-partition-demo@3242: copy 
> > source revision is nullid 
> > src/demo/mesh/partitioning/dolfin-mesh-partition-demo:000000000000
> >  src/demo/mesh/partitioning/cpp/test.py@3223: copy source revision is 
> > nullid src/demo/mesh/partitioning/test.py:000000000000
> > 4878 files, 4787 changesets, 42101 total revisions
> > 4 integrity errors encountered!
> > (first damaged changeset appears to be 3223)
> >
> > - Shawn
> >
> > On Fri, 19 Sep 2008, Dag Lindbo wrote:
> >
> > > My clone has not been updated since changeset 4723:ee68f8d883e3, Sept
> > > 4:th, and I have the exact same problem as Shawn.
> > >
> > > It seems to be the case that Mercurial 0.9.1 thinks the current head is
> > > fine. Running on the fenics.org server:
> > >
> > >
> > > dag@communalis:~/hg$ hg clone /home/dolfin/hg/dolfin dolfin_tmp
> > > requesting all changes
> > > adding changesets
> > > adding manifests
> > > adding file changes
> > > added 4787 changesets with 42101 changes to 4878 files
> > > 1263 files updated, 0 files merged, 0 files removed, 0 files unresolved
> > > dag@communalis:~/hg$ hg verify
> > > abort: no repo found!
> > > dag@communalis:~/hg$ cd dolfin_tmp/
> > > dag@communalis:~/hg/dolfin_tmp$ hg verify
> > > checking changesets
> > > checking manifests
> > > crosschecking files in changesets and manifests
> > > checking files
> > > 4878 files, 4787 changesets, 42101 total revisions
> > >
> > >
> > >
> > > /Dag
> > >
> > > Shawn Walker wrote:
> > > > I recently updated dolfin YESTERDAY (thursday, sept. 18th).  I just ran
> > > > hg verify and got:
> > > >
> > > > walker@box227 ~/FENICS/dolfin
> > > > $ hg verify
> > > > checking changesets
> > > > checking manifests
> > > > crosschecking files in changesets and manifests
> > > > checking files
> > > >  demo/pde/dg/poisson/python/demo.py.orig@4147: empty or missing copy
> > > > source revlog demo/pde/dg/python/demo.py.orig:000000000000
> > > >  src/demo/mesh/partitioning/cpp/dolfin-mesh-partition-demo@3223: copy
> > > > source revision is nullid
> > > > src/demo/mesh/partitioning/dolfin-mesh-partition-demo:000000000000
> > > >  src/demo/mesh/partitioning/cpp/dolfin-mesh-partition-demo@3242: copy
> > > > source revision is nullid
> > > > src/demo/mesh/partitioning/dolfin-mesh-partition-demo:000000000000
> > > >  src/demo/mesh/partitioning/cpp/test.py@3223: copy source revision is
> > > > nullid src/demo/mesh/partitioning/test.py:000000000000
> > > > 4876 files, 4783 changesets, 42084 total revisions
> > > > 4 integrity errors encountered!
> > > > (first damaged changeset appears to be 3223)
> > > >
> > > > I have not updated dolfin with the new stuff from today.  I can do that
> > > > if that would be helpful.
> > > >
> > > > - Shawn
> > > >
> > > > On Fri, 19 Sep 2008, Johan Hake wrote:
> > > >
> > > > > On Friday 19 September 2008 14:31:25 Johan Hake wrote:
> > > > > > On Friday 19 September 2008 13:58:14 Ola Skavhaug wrote:
> > > > > > > Anders Logg skrev den 19/09-2008 f?lgende:
> > > > > > > > If I run hg verify on the repository, I get
> > > > > > > >
> > > > > > > > checking changesets
> > > > > > > > checking manifests
> > > > > > > > crosschecking files in changesets and manifests
> > > > > > > > checking files
> > > > > > > >  doc/manual/dolfin-user-manual.pdf@2180: unpacking 0cfaffa5665f: 
> > > > > > > > Error
> > > > > > > >  -3 while decompressing data: incorrect data check
> > > > > > > >  doc/manual/dolfin-user-manual.pdf@2181: unpacking 0c1a7c863c14: 
> > > > > > > > Error
> > > > > > > >  -3 while decompressing data: incorrect data check
> > > > > > > >  doc/manual/dolfin-user-manual.pdf@2183: unpacking 0945fe8b62a5: 
> > > > > > > > Error
> > > > > > > >  -3 while decompressing data: incorrect data check
> > > > > > > >  dolfin/graph/GraphPartition.cpp@3656: checking rename of
> > > > > > > >  f8fc00fbec5f: data/src/kernel/graph/GraphPartition.cpp.i: no node
> > > > > > > >  49bdb952d2af811ab6fe897b3ad838a717a5aafc
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: index contains -514678021
> > > > > > > >  extra bytes
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3002: unpacking 2808e8d20b39:
> > > > > > > >  integrity check failed on
> > > > > > > >  data/src/kernel/graph/GraphPartition.cpp.d:5
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: rev 6 points to unexpected
> > > > > > > >  changeset 11
> > > > > > > >  (expected 3009)
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: ff3ad1d2ffbb not in 
> > > > > > > > manifests
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: unpacking ff3ad1d2ffbb:
> > > > > > > >  incompatible revision flag b900
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: checking parents of
> > > > > > > >  ff3ad1d2ffbb: list index out of range
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: checking rename of
> > > > > > > >  ff3ad1d2ffbb: list index out of range
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: rev 7 point to nonexistent
> > > > > > > >  changeset 1820866133
> > > > > > > >  (expected 3009)
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: 148482c41836 not in 
> > > > > > > > manifests
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: unpacking 148482c41836:
> > > > > > > >  incompatible revision flag 4114
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: checking parents of
> > > > > > > >  148482c41836: list index out of range
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@?: checking rename of
> > > > > > > >  148482c41836: list index out of range
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3009: 3ad1d2ffbb05 in manifests
> > > > > > > >  not found
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3034: fb94ecb0aa58 in manifests
> > > > > > > >  not found
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3036: 674e28207dcf in manifests
> > > > > > > >  not found
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3045: 7d9c717eb332 in manifests
> > > > > > > >  not found
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3085: 025f312f7c22 in manifests
> > > > > > > >  not found
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3145: ba5051dff67d in manifests
> > > > > > > >  not found
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3146: 7196ccf07616 in manifests
> > > > > > > >  not found
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3148: af020bb3ace1 in manifests
> > > > > > > >  not found
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3190: c95515e95a3e in manifests
> > > > > > > >  not found
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3222: c563075bf5b8 in manifests
> > > > > > > >  not found
> > > > > > > >  src/kernel/graph/GraphPartition.cpp@3255: 49bdb952d2af in manifests
> > > > > > > >  not found
> > > > > > > > 4877 files, 4786 changesets, 42087 total revisions
> > > > > > > > 2 warnings encountered!
> > > > > > > > 27 integrity errors encountered!
> > > > > > > > (first damaged changeset appears to be 2180)
> > > > > > > >
> > > > > > > > Does anyone (or everyone) else get the same error? Is there a way to
> > > > > > > > fix it?
> > > > > > > >
> > > > > > > > --
> > > > > > > > Anders
> > > > > > > I got the following errors when running hg verify:
> > > > > > > skavhaug@blakken:~/devel/dolfin-petsc$ hg verify
> > > > > > > checking changesets
> > > > > > > checking manifests
> > > > > > > crosschecking files in changesets and manifests
> > > > > > > checking files
> > > > > > >  demo/pde/dg/poisson/python/demo.py.orig@4147: empty or missing copy
> > > > > > > source revlog demo/pde/dg/python/demo.py.orig:000000000000
> > > > > > >  src/demo/mesh/partitioning/cpp/dolfin-mesh-partition-demo@3223: copy
> > > > > > > source revision is nullid
> > > > > > > src/demo/mesh/partitioning/dolfin-mesh-partition-demo:000000000000
> > > > > > >  src/demo/mesh/partitioning/cpp/dolfin-mesh-partition-demo@3242: copy
> > > > > > > source revision is nullid
> > > > > > > src/demo/mesh/partitioning/dolfin-mesh-partition-demo:000000000000
> > > > > > >  src/demo/mesh/partitioning/cpp/test.py@3223: copy source revision is
> > > > > > > nullid src/demo/mesh/partitioning/test.py:000000000000
> > > > > > > 4876 files, 4783 changesets, 42084 total revisions
> > > > > > > 4 integrity errors encountered!
> > > > > > > (first damaged changeset appears to be 3223)
> > > > > > Same here.
> > > > > >
> > > > > > > I have no idea what to do with it :)
> > > > > > Maybee this give us some clues:
> > > > > >
> > > > > >   <http://marc.info/?l=mercurial&m=120594475414715&w=2>
> > > > > and another one:
> > > > >
> > > > >  <http://www.nabble.com/Integrity-Error-td19023792.html>
> > > > >
> > > > > Still complicated...
> > > > >
> > > > > and not sure we have the same error as them :)
> > > > >
> > > > > Johan
> > > > > _______________________________________________
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