dolfin team mailing list archive

[Kristian Oelgaard <k.b.oelgaard@xxxxxxxxxx>]

Quoting Johan Hake <hake@xxxxxxxxx>:

> On Thursday 14 May 2009 11:45:16 Kristian Oelgaard wrote:
> > Hi,
> >
> > I get the following error when compiling PyDolfin:
> >
> > mpic++ -o dolfin/swig/cpp_wrap.os -c -Wall -pipe -ansi -Werror -DDEBUG -g
> > -DNDEBUG -O2 -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK
> > -DPACKAGE_VERSION=\"0.9.2\" -DHAS_PETSC=1 -DHAS_SLEPC=1 -DHAS_UMFPACK=1
> > -DHAS_GTS=1 -DHAS_CHOLMOD=1 -DHAS_MTL4=1 -DHAS_PARMETIS=1
> > -fno-strict-aliasing -fPIC -I.
> > -I/home/oelgaard/local/include -I/usr/include -I/usr/include/libxml2
> > -I/home/oelgaard/local/lib/petsc-3.0.0-p5/linux-gnu-cxx-debug/include
> > -I/home/oelgaard/local/lib/petsc-3.0.0-p5/include -I/usr/include
> > -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib
> > -I/home/oelgaard/local/lib/slepc-3.0.0-p2
> > -I/home/oelgaard/local/lib/slepc-3.0.0-p2/linux-gnu-cxx-debug/include
> > -I/home/oelgaard/local/lib/slepc-3.0.0-p2/include
> > -I/home/oelgaard/local/lib/petsc-3.0.0-p5/linux-gnu-cxx-debug/include
> > -I/home/oelgaard/local/lib/petsc-3.0.0-p5/include -I/usr/include
> > -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib
> > -I/usr/include/suitesparse -I/usr/include -I/usr/include/glib-2.0
> > -I/usr/lib/glib-2.0/include -I/usr/include/suitesparse
> > -I/home/oelgaard/local/lib/mtl4 -I/usr/include -I/usr/include
> > -I/usr/include/python2.5 -I/usr/include/python2.5
> > -I/usr/lib/python2.5/site-packages/numpy/core/include
> > -I/home/oelgaard/local/include -I/usr/include -I/usr/include/libxml2
> > -I/home/oelgaard/local/lib/petsc-3.0.0-p5/linux-gnu-cxx-debug/include
> > -I/home/oelgaard/local/lib/petsc-3.0.0-p5/include -I/usr/include
> > -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib
> > -I/home/oelgaard/local/lib/slepc-3.0.0-p2
> > -I/home/oelgaard/local/lib/slepc-3.0.0-p2/linux-gnu-cxx-debug/include
> > -I/home/oelgaard/local/lib/slepc-3.0.0-p2/include
> > -I/home/oelgaard/local/lib/petsc-3.0.0-p5/linux-gnu-cxx-debug/include
> > -I/home/oelgaard/local/lib/petsc-3.0.0-p5/include -I/usr/include
> > -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib
> > -I/usr/include/suitesparse -I/usr/include -I/usr/include/glib-2.0
> > -I/usr/lib/glib-2.0/include -I/usr/include/suitesparse
> > -I/home/oelgaard/local/lib/mtl4 -I/usr/include -I/usr/include
> > dolfin/swig/cpp_wrap.cc
> > dolfin/swig/cpp_wrap.cc:146:20: error: Python.h: No such file or directory
> > dolfin/swig/cpp_wrap.cc:3330:4: error: #error "This python version requires
> > swig to be run with the '-classic' option"
> > dolfin/swig/cpp_wrap.cc:3334:3: error: #error "This python version requires
> > swig to be run with the '-nomodern' option"
> > dolfin/swig/cpp_wrap.cc:3337:3: error: #error "This python version requires
> > swig to be run with the '-nomodernargs' option"
> > dolfin/swig/cpp_wrap.cc:3340:3: error: #error "This python version requires
> > swig to be run with the '-nofastunpack' option"
> > In file included from /usr/include/python2.5/numpy/arrayobject.h:14,
> >                  from dolfin/swig/cpp_wrap.cc:3430:
> > /usr/include/python2.5/numpy/ndarrayobject.h:114:2: error: #error Must use
> > Python with unicode enabled.
> > dolfin/swig/cpp_wrap.cc:752: error: expected initializer before ‘*’ token
> > dolfin/swig/cpp_wrap.cc:807: error: expected initializer before ‘*’ token
> > dolfin/swig/cpp_wrap.cc:828: error: expected initializer before ‘*’ token
> > In file included from /usr/include/c++/4.3/new:45,
> >                  from /usr/include/c++/4.3/ext/new_allocator.h:37,
> >                  from
> > /usr/include/c++/4.3/i486-linux-gnu/bits/c++allocator.h:39,
> >                  from /usr/include/c++/4.3/bits/allocator.h:53,
> >                  from /usr/include/c++/4.3/string:48,
> >                  from dolfin/swig/cpp_wrap.cc:2520:
> > /usr/include/c++/4.3/exception:40: error: expected declaration before end
> > of line
> > scons: *** [dolfin/swig/cpp_wrap.os] Error 1
> > scons: building terminated because of errors.
> > dolfin/swig/cpp_wrap.os failed: Error 1
> >
> > I have python2.6-dev install, but not python2.5-dev.
> > Notice the double occurrence of '-I/usr/include/python2.5
> > -I/usr/include/python2.5' in the cflags. Should one of them be
> > '-I/usr/include/python2.6'?
> > If I install python2.5-dev it works without problems, I was just wondering
> > if this is a bug in the build system?
>
> What version is registered in the installed python-2.pc file, 2.5 or 2.6?

In dolfin/scons/pkgconfig/python-2.pc it is 2.6,
but I had an old python-2.pc in /home/oelgaard/local/lib/pkgconfig/ which said
2.5.

Problem solved.

Kristian

> Johan
>
> > Kristian
> >
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