dolfin team mailing list archive

[Harish Narayanan <harish.mlists@xxxxxxxxx>]

Aron Wahlberg wrote:
> I just built dolfin (without parmetis, swiginac, trillinos or syfi).  
> After sourcing I ended up a missing symbol:
> 
> Symbol not found: _camd_calloc
> 
> The error does not make sense to me. Mabybe to sombody else?

This is a problem with the pkgconfiggenerator for suitesparse when one
builds a recent suitesparse by hand.

You need to make sure the following modifications are made to the
corresponding files:

diff -r 0e4d88def193
scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py
--- a/scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py	Mon
Oct 19 11:41:27 2009 +0100
+++ b/scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py	Wed
Oct 21 11:31:23 2009 +0200
@@ -225,8 +225,8 @@
     libs += "-L%s -llapack -L%s -lblas" % \
             (getLapackDir(sconsEnv=sconsEnv),
getBlasDir(sconsEnv=sconsEnv))
   libs += " -L%s -lcholmod" % getCholmodLibDir(sconsEnv)
-  libs += " -L%s -lamd" % getAmdLibDir(sconsEnv)
-  libs += " -L%s -lcolamd" % getColamdLibDir(sconsEnv)
+  libs += " -L%s -lamd -lcamd" % getAmdLibDir(sconsEnv)
+  libs += " -L%s -lcolamd -lccolamd" % getColamdLibDir(sconsEnv)
   return libs

 def pkgTests(forceCompiler=None, sconsEnv=None,
diff -r 0e4d88def193
scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py
--- a/scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py	Mon
Oct 19 11:41:27 2009 +0100
+++ b/scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py	Wed
Oct 21 11:31:23 2009 +0200
@@ -31,7 +31,7 @@
 	-@echo -I${PETSC_DIR}/%s${PETSC_ARCH}%s -I${PETSC_DIR}/include
${MPI_INCLUDE}

 get_petsc_libs:
-	-@echo   ${C_SH_LIB_PATH} -L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC}
+	-@echo   ${C_SH_LIB_PATH} -L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC} -lX11
-L/usr/X11R6/lib

 get_petsc_cc:
 	-@echo ${PCC}
diff -r 0e4d88def193
scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py
--- a/scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py	Mon
Oct 19 11:41:27 2009 +0100
+++ b/scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py	Wed
Oct 21 11:31:23 2009 +0200
@@ -225,7 +225,7 @@
     libs += "-framework vecLib"
   else:
     libs += "-L%s -lblas" % getBlasDir(sconsEnv=sconsEnv)
-  libs += " -L%s -lumfpack" % getUmfpackLibDir(sconsEnv)
+  libs += " -L%s -lumfpack -lmetis" % getUmfpackLibDir(sconsEnv)
   if needAMD(sconsEnv):
     libs += " -L%s -lamd" % getAMDLibDir(sconsEnv)
   return libs

Harish