dolfin team mailing list archive

[Aron Wahlberg <aron.wahlberg@xxxxxxxxx>]

On 21 okt 2009, at 11.32, Harish Narayanan wrote:

> Aron Wahlberg wrote:
> > I just built dolfin (without parmetis, swiginac, trillinos or syfi).
> > After sourcing I ended up a missing symbol:
> >
> > Symbol not found: _camd_calloc
> >
> > The error does not make sense to me. Mabybe to sombody else?
>
> This is a problem with the pkgconfiggenerator for suitesparse when one
> builds a recent suitesparse by hand.
>
> You need to make sure the following modifications are made to the
> corresponding files:
>
> diff -r 0e4d88def193
> scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py
> --- a/scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py	 
> Mon
> Oct 19 11:41:27 2009 +0100
> +++ b/scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py	 
> Wed
> Oct 21 11:31:23 2009 +0200
> @@ -225,8 +225,8 @@
>     libs += "-L%s -llapack -L%s -lblas" % \
>             (getLapackDir(sconsEnv=sconsEnv),
> getBlasDir(sconsEnv=sconsEnv))
>   libs += " -L%s -lcholmod" % getCholmodLibDir(sconsEnv)
> -  libs += " -L%s -lamd" % getAmdLibDir(sconsEnv)
> -  libs += " -L%s -lcolamd" % getColamdLibDir(sconsEnv)
> +  libs += " -L%s -lamd -lcamd" % getAmdLibDir(sconsEnv)
> +  libs += " -L%s -lcolamd -lccolamd" % getColamdLibDir(sconsEnv)
>   return libs
>
> def pkgTests(forceCompiler=None, sconsEnv=None,
> diff -r 0e4d88def193
> scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py
> --- a/scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py	Mon
> Oct 19 11:41:27 2009 +0100
> +++ b/scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py	Wed
> Oct 21 11:31:23 2009 +0200
> @@ -31,7 +31,7 @@
> 	-@echo -I${PETSC_DIR}/%s${PETSC_ARCH}%s -I${PETSC_DIR}/include
> ${MPI_INCLUDE}
>
> get_petsc_libs:
> -	-@echo   ${C_SH_LIB_PATH} -L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC}
> +	-@echo   ${C_SH_LIB_PATH} -L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC} - 
> lX11
> -L/usr/X11R6/lib
>
> get_petsc_cc:
> 	-@echo ${PCC}
> diff -r 0e4d88def193
> scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py
> --- a/scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py	 
> Mon
> Oct 19 11:41:27 2009 +0100
> +++ b/scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py	 
> Wed
> Oct 21 11:31:23 2009 +0200
> @@ -225,7 +225,7 @@
>     libs += "-framework vecLib"
>   else:
>     libs += "-L%s -lblas" % getBlasDir(sconsEnv=sconsEnv)
> -  libs += " -L%s -lumfpack" % getUmfpackLibDir(sconsEnv)
> +  libs += " -L%s -lumfpack -lmetis" % getUmfpackLibDir(sconsEnv)
>   if needAMD(sconsEnv):
>     libs += " -L%s -lamd" % getAMDLibDir(sconsEnv)
>   return libs
>
> Harish

The problem remains tough...
However, running any of the files I updated results in warnings and  
"Consider setting the variable CHOLMOD_DIR" or similar for the other  
files. It also tells me to update the PKG_CONFIG_PATH with the current  
directory.
Where should I set these variables and to what values?

Aron