dolfin team mailing list archive

[Anders Logg <logg@xxxxxxxxx>]

On Wed, Oct 21, 2009 at 10:01:30PM +0200, Harish Narayanan wrote:
> Aron Wahlberg wrote:
> >
> > On 21 okt 2009, at 11.32, Harish Narayanan wrote:
> >
> >> Aron Wahlberg wrote:
> >>> I just built dolfin (without parmetis, swiginac, trillinos or syfi).
> >>> After sourcing I ended up a missing symbol:
> >>>
> >>> Symbol not found: _camd_calloc
> >>>
> >>> The error does not make sense to me. Mabybe to sombody else?
> >>
> >> This is a problem with the pkgconfiggenerator for suitesparse when one
> >> builds a recent suitesparse by hand.
> >>
> >> You need to make sure the following modifications are made to the
> >> corresponding files:
> >>
> >> diff -r 0e4d88def193
> >> scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py
> >> ---
> >> a/scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py    Mon
> >> Oct 19 11:41:27 2009 +0100
> >> +++
> >> b/scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py    Wed
> >> Oct 21 11:31:23 2009 +0200
> >> @@ -225,8 +225,8 @@
> >>     libs += "-L%s -llapack -L%s -lblas" % \
> >>             (getLapackDir(sconsEnv=sconsEnv),
> >> getBlasDir(sconsEnv=sconsEnv))
> >>   libs += " -L%s -lcholmod" % getCholmodLibDir(sconsEnv)
> >> -  libs += " -L%s -lamd" % getAmdLibDir(sconsEnv)
> >> -  libs += " -L%s -lcolamd" % getColamdLibDir(sconsEnv)
> >> +  libs += " -L%s -lamd -lcamd" % getAmdLibDir(sconsEnv)
> >> +  libs += " -L%s -lcolamd -lccolamd" % getColamdLibDir(sconsEnv)
> >>   return libs
> >>
> >> def pkgTests(forceCompiler=None, sconsEnv=None,
> >> diff -r 0e4d88def193
> >> scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py
> >> --- a/scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py    Mon
> >> Oct 19 11:41:27 2009 +0100
> >> +++ b/scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py    Wed
> >> Oct 21 11:31:23 2009 +0200
> >> @@ -31,7 +31,7 @@
> >>     -@echo -I${PETSC_DIR}/%s${PETSC_ARCH}%s -I${PETSC_DIR}/include
> >> ${MPI_INCLUDE}
> >>
> >> get_petsc_libs:
> >> -    -@echo   ${C_SH_LIB_PATH} -L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC}
> >> +    -@echo   ${C_SH_LIB_PATH} -L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC}
> >> -lX11
> >> -L/usr/X11R6/lib
> >>
> >> get_petsc_cc:
> >>     -@echo ${PCC}
> >> diff -r 0e4d88def193
> >> scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py
> >> ---
> >> a/scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py    Mon
> >> Oct 19 11:41:27 2009 +0100
> >> +++
> >> b/scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py    Wed
> >> Oct 21 11:31:23 2009 +0200
> >> @@ -225,7 +225,7 @@
> >>     libs += "-framework vecLib"
> >>   else:
> >>     libs += "-L%s -lblas" % getBlasDir(sconsEnv=sconsEnv)
> >> -  libs += " -L%s -lumfpack" % getUmfpackLibDir(sconsEnv)
> >> +  libs += " -L%s -lumfpack -lmetis" % getUmfpackLibDir(sconsEnv)
> >>   if needAMD(sconsEnv):
> >>     libs += " -L%s -lamd" % getAMDLibDir(sconsEnv)
> >>   return libs
> >>
> >> Harish
> >
> > Thank you Harish. That fixed it!
> > However there is a new very similar problem. This time it is the symbol
> > _XAllocColor that's missing. I can't see how you knew where to change,
> > and to what, to fix the last problem? I expect  a similar change in any
> > of the files in pkggenerator (?).
> >
> > Do you have the same easy fix this time?
>
> Yes, it's in the original diff that I sent you. Add -lX11 etc. to the
> petsc pkgconfig generator.

Looks like these patches should be applied to the pkgconfig generators.
Can someone with a good grasp of the pkgconfig generators have a
look. Perhaps Johannes?

--
Anders

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