dolfin team mailing list archive

[Marie Rognes <meg@xxxxxxxxx>]

Newly updated dolfin gives me this error:

   meg@localhost ~/local/src/fenics/adaptivity/demo $ python
   Python 2.6.4 (r264:75706, Dec  7 2009, 23:01:27)
   [GCC 4.3.2] on linux2
   Type "help", "copyright", "credits" or "license" for more information.
    >>> import dolfin
   Traceback (most recent call last):
     File "<stdin>", line 1, in <module>
     File
   "/home/meg/local/lib64/python2.6/site-packages/dolfin/__init__.py",
   line 13, in <module>
       import dolfin.cpp as cpp
     File
   "/home/meg/local/lib64/python2.6/site-packages/dolfin/cpp.py", line
   6, in <module>
       import _cpp
   ImportError: /home/meg/local/lib/libdolfin.so.0: undefined symbol:
   _ZN6dolfin6SCOTCH17compute_partitionERSt6vectorIjSaIjEERKNS_13LocalMeshDataE


scons configure attached. Help?

--
Marie

scons: Reading SConscript files ...
/home/meg/local/src/fenics/dolfin/scons/simula-scons
Using options from /home/meg/local/src/fenics/dolfin/scons/options.cache
MPI not found (might not work if PETSc uses MPI).
Checking for pkg-config... yes
Checking for boost... yes
Checking for boost_filesystem... yes
Checking for boost_program_options... yes
Checking for cgal... yes
Checking for cholmod... no (pkg-config file not found)
 Trying to generate pkg-config file for cholmod... failed
Checking for lapack... yes
Checking for libxml-2.0... yes
Checking for mtl4... no (pkg-config file not found)
 Trying to generate pkg-config file for mtl4... failed
Checking for numpy-1... yes
Checking for parmetis... no (pkg-config file not found)
 Trying to generate pkg-config file for parmetis... failed
Checking for petsc... yes
Checking for python-2... yes
Checking for scotch... no (pkg-config file not found)
 Trying to generate pkg-config file for scotch... failed
Checking for slepc... yes
Checking for trilinos... no (pkg-config file not found)
 Trying to generate pkg-config file for trilinos... failed
Checking for ufc-1... yes
Checking for umfpack... yes
Checking for zlib... yes
Resolving compiler... done
Found optional package: cgal (version >= 3.5)
Found optional package: umfpack (version >= 5.2.0)
Found optional package: lapack (version >= 3.0)
Found optional package: slepc (version >= 3.0.0)
Found optional package: zlib (version >= 1.2.3)
Found optional package: petsc (version >= 3.0.0)
Unable to find optional package: trilinos (version >= 7.0.0)
Unable to find optional package: cholmod (version >= 1.6.0)
Unable to find optional package: parmetis (version >= 3.1)
Unable to find optional package: mtl4 (version >= 4)
Unable to find optional package: scotch (version >= 5.0)
Enabling compilation of Python wrappers
---------------------------------------------------------
Configuration of DOLFIN finished. Now run

    scons

to build DOLFIN. To see available configure options, run

    scons configure --help or -h

For a list of general SCons options, run

    scons --help-options or -H

---------------------------------------------------------