dolfin team mailing list archive

["Riesen Patrick" <priesen@xxxxxxxxxxxxxxx>]

hi,

ldd on libdolfin.so gives


	linux-vdso.so.1 =>  (0x00007fffe6cd6000)
	libboost_program_options.so.1.40.0 => /scratch/priesen/FEniCS/build/lib/libboost_program_options.so.1.40.0 (0x00007f2b6926d000)
	libboost_filesystem.so.1.40.0 => /scratch/priesen/FEniCS/build/lib/libboost_filesystem.so.1.40.0 (0x00007f2b69059000)
	libxml2.so.2 => /usr/lib/libxml2.so.2 (0x00007f2b68ccb000)
	liblapack.so.3gf => /usr/lib/atlas/liblapack.so.3gf (0x00007f2b681de000)
	libblas.so.3gf => /usr/lib/atlas/libblas.so.3gf (0x00007f2b67821000)
	libz.so.1 => /usr/lib/libz.so.1 (0x00007f2b6760a000)
[....]

so the boost shared libs are loaded, but there's another boost lib as

libboost_thread-gcc42-mt-1_34_1.so.1.34.1 => /usr/lib/libboost_thread-gcc42-mt-1_34_1.so.1.34.1 (0x00007ff99fc0d000)


this is suspicious, since it does not belong to the actual boost1.4.0 i have in my FEniCS/build dir
don't know how it found this... i have set the BOOST_DIR variable correctly to .../FEniCS/build.
hm....


 

-----Original Message-----
From: Andy Ray Terrel [mailto:andy.terrel@xxxxxxxxx]
Sent: Thu 15.04.2010 16:26
To: Riesen  Patrick
Cc: DOLFIN Mailing List
Subject: Re: [Dolfin] linking error
 
Can you do ldd (otool -L on Mac) on the object file to see if boost's
shared library is being loaded. It looks like either an older version
of boost or a problem finding the shared library.

aterrel@aterrel:~/workspace/dolfin/demo/pde/stokes/taylor-hood/cpp$
otool -L ~/workspace/lib/libdolfin.dylib
/Users/aterrel/workspace/lib/libdolfin.dylib:
	dolfin/libdolfin.dylib (compatibility version 0.0.0, current version 0.0.0)
	/System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
(compatibility version 1.0.0, current version 268.0.1)
	/sw/lib/libboost_program_options-1_35.dylib (compatibility version
1.35.0, current version 1.35.0)
	/sw/lib/libboost_filesystem-1_35.dylib (compatibility version 1.35.0,
current version 1.35.0)
	/sw/lib/libboost_system-1_35.dylib (compatibility version 1.35.0,
current version 1.35.0)
	/sw/lib/libxml2.2.dylib (compatibility version 9.0.0, current version 9.32.0)
	/usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.3)
	/usr/local/lib/libmpi_cxx.0.dylib (compatibility version 1.0.0,
current version 1.0.0)
	/usr/local/lib/libmpi.0.dylib (compatibility version 1.0.0, current
version 1.1.0)
	/usr/local/lib/libopen-rte.0.dylib (compatibility version 1.0.0,
current version 1.0.0)
	/usr/local/lib/libopen-pal.0.dylib (compatibility version 1.0.0,
current version 1.0.0)
	/usr/lib/libutil.dylib (compatibility version 1.0.0, current version 1.0.0)
	/usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.9.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
version 125.0.1)


-- Andy

On Thu, Apr 15, 2010 at 8:57 AM, Patrick Riesen <priesen@xxxxxxxxxxxxxxx> wrote:
> hello, i just made a bzr pull for all fenics packages.
>
> dolfin compiled and linked without problem. but when compiling any of the
> demos i get the following linking error:
>
> mpic++ -o demo -Wl,-rpath,/scratch/priesen/FEniCS/build/lib main.o
> -L/scratch/priesen/FEniCS/build/lib -L/usr/lib/atlas -ldolfin
> -lboost_program_options -lboost_filesystem -lxml2 -lz -lumfpack -lamd
> -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc
> -lX11 -lCGAL -llapack -lblas
> /scratch/priesen/FEniCS/build/lib/libdolfin.so: undefined reference to
> `boost::detail::set_tss_data(void const*,
> boost::shared_ptr<boost::detail::tss_cleanup_function>, void*, bool)'
> /scratch/priesen/FEniCS/build/lib/libdolfin.so: undefined reference to
> `boost::detail::get_tss_data(void const*)'
> collect2: ld returned 1 exit status
> scons: *** [demo] Error 1
> scons: building terminated because of errors.
>
>
> help appreciated :-)
>
> best regards,
>
> patrick
>
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