dolfin team mailing list archive

[Johannes Ring <johannr@xxxxxxxxx>]

On Thu, Apr 15, 2010 at 6:53 PM, Riesen  Patrick
<priesen@xxxxxxxxxxxxxxx> wrote:
> hi,
>
> ldd on libdolfin.so gives
>
>
>        linux-vdso.so.1 =>  (0x00007fffe6cd6000)
>        libboost_program_options.so.1.40.0 => /scratch/priesen/FEniCS/build/lib/libboost_program_options.so.1.40.0 (0x00007f2b6926d000)
>        libboost_filesystem.so.1.40.0 => /scratch/priesen/FEniCS/build/lib/libboost_filesystem.so.1.40.0 (0x00007f2b69059000)
>        libxml2.so.2 => /usr/lib/libxml2.so.2 (0x00007f2b68ccb000)
>        liblapack.so.3gf => /usr/lib/atlas/liblapack.so.3gf (0x00007f2b681de000)
>        libblas.so.3gf => /usr/lib/atlas/libblas.so.3gf (0x00007f2b67821000)
>        libz.so.1 => /usr/lib/libz.so.1 (0x00007f2b6760a000)
> [....]
>
> so the boost shared libs are loaded, but there's another boost lib as
>
> libboost_thread-gcc42-mt-1_34_1.so.1.34.1 => /usr/lib/libboost_thread-gcc42-mt-1_34_1.so.1.34.1 (0x00007ff99fc0d000)

I think it is CGAL that links to that library. Try to rebuild CGAL
with these two options:

  -D Boost_INCLUDE_DIR:PATH=/scratch/priesen/FEniCS/build/include
  -D Boost_LIBRARY_DIRS:FILEPATH=/scratch/priesen/FEniCS/build/lib

Johannes

> this is suspicious, since it does not belong to the actual boost1.4.0 i have in my FEniCS/build dir
> don't know how it found this... i have set the BOOST_DIR variable correctly to .../FEniCS/build.
> hm....
>
>
>
>
> -----Original Message-----
> From: Andy Ray Terrel [mailto:andy.terrel@xxxxxxxxx]
> Sent: Thu 15.04.2010 16:26
> To: Riesen  Patrick
> Cc: DOLFIN Mailing List
> Subject: Re: [Dolfin] linking error
>
> Can you do ldd (otool -L on Mac) on the object file to see if boost's
> shared library is being loaded. It looks like either an older version
> of boost or a problem finding the shared library.
>
> aterrel@aterrel:~/workspace/dolfin/demo/pde/stokes/taylor-hood/cpp$
> otool -L ~/workspace/lib/libdolfin.dylib
> /Users/aterrel/workspace/lib/libdolfin.dylib:
>        dolfin/libdolfin.dylib (compatibility version 0.0.0, current version 0.0.0)
>        /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
> (compatibility version 1.0.0, current version 268.0.1)
>        /sw/lib/libboost_program_options-1_35.dylib (compatibility version
> 1.35.0, current version 1.35.0)
>        /sw/lib/libboost_filesystem-1_35.dylib (compatibility version 1.35.0,
> current version 1.35.0)
>        /sw/lib/libboost_system-1_35.dylib (compatibility version 1.35.0,
> current version 1.35.0)
>        /sw/lib/libxml2.2.dylib (compatibility version 9.0.0, current version 9.32.0)
>        /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.3)
>        /usr/local/lib/libmpi_cxx.0.dylib (compatibility version 1.0.0,
> current version 1.0.0)
>        /usr/local/lib/libmpi.0.dylib (compatibility version 1.0.0, current
> version 1.1.0)
>        /usr/local/lib/libopen-rte.0.dylib (compatibility version 1.0.0,
> current version 1.0.0)
>        /usr/local/lib/libopen-pal.0.dylib (compatibility version 1.0.0,
> current version 1.0.0)
>        /usr/lib/libutil.dylib (compatibility version 1.0.0, current version 1.0.0)
>        /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.9.0)
>        /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
> version 125.0.1)
>
>
> -- Andy
>
> On Thu, Apr 15, 2010 at 8:57 AM, Patrick Riesen <priesen@xxxxxxxxxxxxxxx> wrote:
>> hello, i just made a bzr pull for all fenics packages.
>>
>> dolfin compiled and linked without problem. but when compiling any of the
>> demos i get the following linking error:
>>
>> mpic++ -o demo -Wl,-rpath,/scratch/priesen/FEniCS/build/lib main.o
>> -L/scratch/priesen/FEniCS/build/lib -L/usr/lib/atlas -ldolfin
>> -lboost_program_options -lboost_filesystem -lxml2 -lz -lumfpack -lamd
>> -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc
>> -lX11 -lCGAL -llapack -lblas
>> /scratch/priesen/FEniCS/build/lib/libdolfin.so: undefined reference to
>> `boost::detail::set_tss_data(void const*,
>> boost::shared_ptr<boost::detail::tss_cleanup_function>, void*, bool)'
>> /scratch/priesen/FEniCS/build/lib/libdolfin.so: undefined reference to
>> `boost::detail::get_tss_data(void const*)'
>> collect2: ld returned 1 exit status
>> scons: *** [demo] Error 1
>> scons: building terminated because of errors.
>>
>>
>> help appreciated :-)
>>
>> best regards,
>>
>> patrick
>>
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>
>
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