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[S Wood <question140285@xxxxxxxxxxxxxxxxxxxxx>]

New question #140285 on DOLFIN:
https://answers.launchpad.net/dolfin/+question/140285

Hi

This might have already been discussed but I cannot really figure out how to set the PATH for MTL4, PETSC, ... to install  dolfin-0.9.9 on a redhat linux. No success with the dorsal installation so I resort to manual installation but I get:


-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Performing Test HAVE_PIPE
-- Performing Test HAVE_PIPE - Success
-- Performing Test HAVE_PEDANTIC
-- Performing Test HAVE_PEDANTIC - Success
-- Performing Test HAVE_STD
-- Performing Test HAVE_STD - Success
-- Performing Test HAVE_DEBUG
-- Performing Test HAVE_DEBUG - Success
-- Performing Test HAVE_O2_OPTIMISATION
-- Performing Test HAVE_O2_OPTIMISATION - Success
-- Boost version: 1.45.0
-- Found the following Boost libraries:
--   filesystem
--   program_options
--   system
-- Checking for package 'Armadillo'
-- Performing Test ARMADILLO_TEST_RUNS
-- Performing Test ARMADILLO_TEST_RUNS - Success
-- Found Armadillo: TRUE 
-- Found LibXml2: /usr/lib64/libxml2.so 
-- Found PythonInterp: /usr/local/bin/python2.6 
-- Found PythonLibs: /usr/local/lib/libpython2.6.so 
-- NumPy headers found
-- Found SWIG: /usr/bin/swig (found version "1.3.29")
-- Could NOT find MPI (missing:  MPI_LIBRARY MPI_INCLUDE_PATH) 
-- Checking for package 'AMD'
-- Found AMD: /usr/include/suitesparse 
-- Checking for package 'BLAS'
-- Found BLAS: /usr/include 
-- Checking for package 'UMFPACK'
-- Performing Test UMFPACK_TEST_RUNS
-- Performing Test UMFPACK_TEST_RUNS - Success
-- Found UMFPACK: /usr/include/suitesparse 
-- Checking for package 'CHOLMOD'
-- Checking for package 'AMD'
-- Checking for package 'BLAS'
-- ParMETIS could not be found/configured. (missing:  PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS PARMETIS_LIBRARIES) 
-- Checking for package 'LAPACK'
-- Found LAPACK: /usr/lib64/atlas/liblapack.so 
-- Performing Test CHOLMOD_TEST_RUNS
-- Performing Test CHOLMOD_TEST_RUNS - Success
-- Found CHOLMOD: /usr/include/suitesparse 
-- Found CHOLMOD: /usr/lib64/libcholmod.so;/usr/lib64/libamd.so;/usr/lib64/libcamd.so;/usr/lib64/libcolamd.so;/usr/lib64/libccolamd.so;/usr/lib64/atlas/libatlas.so;/usr/lib64/atlas/liblapack.so
-- Checking for package 'Trilinos'
-- Checking for package 'MTL4'
-- Checking for package 'BLAS'
-- MTL4 could not be found. Be sure to set MTL4_DIR (missing:  MTL4_INCLUDE_DIRS MTL4_TEST_RUNS) 
-- Checking for package 'PETSc'
-- PETSC_DIR is PETSC_DIR-NOTFOUND
-- PETSC_ARCH is empty
-- Unable to find petscconf.h
-- PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH. (missing:  PETSC_DIR PETSC_INCLUDE_DIRS PETSC_LIBRARIES PETSC_TEST_RUNS) 
-- Checking for package 'CGAL'
CMake Warning at cmake/modules/FindCGAL.cmake:12 (find_package):
  Could not find a configuration file for package CGAL.

  Set CGAL_DIR to the directory containing a CMake configuration file for
  CGAL.  The file will have one of the following names:

    CGALConfig.cmake
    cgal-config.cmake

Call Stack (most recent call first):
  CMakeLists.txt:235 (find_package)


-- CGAL could not be found. Be sure to set CGAL_DIR (missing:  CGAL_LIBRARIES CGAL_INCLUDE_DIRS CGAL_TEST_RUNS) 
-- Found ZLIB: /usr/include (found version "1.2.3")
-- Checking for package 'CPPUNIT'
-- Found CPPUNIT: /usr/include/cppunit 
-- 
-- The following optional packages were found:
-- -------------------------------------------
-- (OK) UMFPACK
-- (OK) CHOLMOD
-- (OK) ZLIB
-- (OK) PYTHON
-- 
-- The following optional packages were not enabled:
-- -------------------------------------------------
-- (--) GMP
-- 
-- The following optional packages could not be found:
-- ---------------------------------------------------
-- (**) MPI
-- (**) PETSC
-- (**) SLEPC
-- (**) TRILINOS
-- (**) MTL4
-- (**) SCOTCH
-- (**) PARMETIS
-- (**) CGAL
-- 
Traceback (most recent call last):
  File "<string>", line 1, in <module>
ImportError: No module named ufc
CMake Warning at dolfin/CMakeLists.txt:233 (message):
  Unable to import UFC.  Install latest UFC or check that PYTHONPATH is set
  appropriately.  Python will be disabled.


-- Configuring done
-- Generating done

I have installed everything else using dorsal with no error. Where should I set the path for those unfound packages? Is the path where they are installed in the dorsal installation directory?

Many thanks for your help. 

Best,
S.


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