dolfin team mailing list archive

[Johan Hake <johan.hake@xxxxxxxxx>]

This is an example of mine environmental variables in .bashrc:

export LOCAL_INSTALL_DIR=/path/to/dorsal/installation/dir
export SCOTCH_DIR=$LOCAL_INSTALL_DIR
export TRILINOS_DIR=$LOCAL_INSTALL_DIR
export PETSC_DIR=$LOCAL_INSTALL_DIR/lib/petsc
export PETSC_ARCH=linux-gnu-cxx-opt
export SLEPC_DIR=$LOCAL_INSTALL_DIR/lib/slepc

# Note I have my own svn repo for mtl4
export MTL4_DIR=$HOME/svn/mtl4

# Note change the version to the installed python version
export PYTHONPATH=${PYTHONPATH}:$LOCAL_INSTALL_DIR/lib/python2.6/site-packages

You should also consider installing a later SWIG. 1.3.29 is probably too old. 
Just let dorsal install it for you. You also need to install MPI if you want 
to utelize parallel performance.

When these are set correctly you should be able to run cmake on your dolfin 
copy. 

Btw: The CMake build system has seen some recent love, which is included in 
the 0.9.9 release, so you might want to consider upgrade to latest development 
version.

Johan

On Wednesday January 5 2011 09:54:34 S Wood wrote:
> New question #140285 on DOLFIN:
> https://answers.launchpad.net/dolfin/+question/140285
> 
> Hi
> 
> This might have already been discussed but I cannot really figure out how
> to set the PATH for MTL4, PETSC, ... to install  dolfin-0.9.9 on a redhat
> linux. No success with the dorsal installation so I resort to manual
> installation but I get:
> 
> 
> -- The C compiler identification is GNU
> -- The CXX compiler identification is GNU
> -- Check for working C compiler: /usr/bin/gcc
> -- Check for working C compiler: /usr/bin/gcc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Performing Test HAVE_PIPE
> -- Performing Test HAVE_PIPE - Success
> -- Performing Test HAVE_PEDANTIC
> -- Performing Test HAVE_PEDANTIC - Success
> -- Performing Test HAVE_STD
> -- Performing Test HAVE_STD - Success
> -- Performing Test HAVE_DEBUG
> -- Performing Test HAVE_DEBUG - Success
> -- Performing Test HAVE_O2_OPTIMISATION
> -- Performing Test HAVE_O2_OPTIMISATION - Success
> -- Boost version: 1.45.0
> -- Found the following Boost libraries:
> --   filesystem
> --   program_options
> --   system
> -- Checking for package 'Armadillo'
> -- Performing Test ARMADILLO_TEST_RUNS
> -- Performing Test ARMADILLO_TEST_RUNS - Success
> -- Found Armadillo: TRUE
> -- Found LibXml2: /usr/lib64/libxml2.so
> -- Found PythonInterp: /usr/local/bin/python2.6
> -- Found PythonLibs: /usr/local/lib/libpython2.6.so
> -- NumPy headers found
> -- Found SWIG: /usr/bin/swig (found version "1.3.29")
> -- Could NOT find MPI (missing:  MPI_LIBRARY MPI_INCLUDE_PATH)
> -- Checking for package 'AMD'
> -- Found AMD: /usr/include/suitesparse
> -- Checking for package 'BLAS'
> -- Found BLAS: /usr/include
> -- Checking for package 'UMFPACK'
> -- Performing Test UMFPACK_TEST_RUNS
> -- Performing Test UMFPACK_TEST_RUNS - Success
> -- Found UMFPACK: /usr/include/suitesparse
> -- Checking for package 'CHOLMOD'
> -- Checking for package 'AMD'
> -- Checking for package 'BLAS'
> -- ParMETIS could not be found/configured. (missing:  PARMETIS_TEST_RUNS
> PARMETIS_INCLUDE_DIRS PARMETIS_LIBRARIES) -- Checking for package 'LAPACK'
> -- Found LAPACK: /usr/lib64/atlas/liblapack.so
> -- Performing Test CHOLMOD_TEST_RUNS
> -- Performing Test CHOLMOD_TEST_RUNS - Success
> -- Found CHOLMOD: /usr/include/suitesparse
> -- Found CHOLMOD:
> /usr/lib64/libcholmod.so;/usr/lib64/libamd.so;/usr/lib64/libcamd.so;/usr/l
> ib64/libcolamd.so;/usr/lib64/libccolamd.so;/usr/lib64/atlas/libatlas.so;/us
> r/lib64/atlas/liblapack.so -- Checking for package 'Trilinos'
> -- Checking for package 'MTL4'
> -- Checking for package 'BLAS'
> -- MTL4 could not be found. Be sure to set MTL4_DIR (missing: 
> MTL4_INCLUDE_DIRS MTL4_TEST_RUNS) -- Checking for package 'PETSc'
> -- PETSC_DIR is PETSC_DIR-NOTFOUND
> -- PETSC_ARCH is empty
> -- Unable to find petscconf.h
> -- PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH.
> (missing:  PETSC_DIR PETSC_INCLUDE_DIRS PETSC_LIBRARIES PETSC_TEST_RUNS)
> -- Checking for package 'CGAL'
> CMake Warning at cmake/modules/FindCGAL.cmake:12 (find_package):
>   Could not find a configuration file for package CGAL.
> 
>   Set CGAL_DIR to the directory containing a CMake configuration file for
>   CGAL.  The file will have one of the following names:
> 
>     CGALConfig.cmake
>     cgal-config.cmake
> 
> Call Stack (most recent call first):
>   CMakeLists.txt:235 (find_package)
> 
> 
> -- CGAL could not be found. Be sure to set CGAL_DIR (missing: 
> CGAL_LIBRARIES CGAL_INCLUDE_DIRS CGAL_TEST_RUNS) -- Found ZLIB:
> /usr/include (found version "1.2.3")
> -- Checking for package 'CPPUNIT'
> -- Found CPPUNIT: /usr/include/cppunit