dolfin team mailing list archive

[Johannes Ring <johannr@xxxxxxxxx>]

On Wed, Jan 26, 2011 at 5:12 PM, Garth N. Wells <gnw20@xxxxxxxxx> wrote:
> Here's the output. It looks something like the zlib test version not
> adding the zlib flags. I can compile the tests by hand on the command line.

Sorry, my fault. Should be fixed now.

Johannes

> Garth
>
>
> -- Checking for package 'SCOTCH-PT'
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:59
> ] location of ptscotch.h: /home/garth/local/include/ptscotch.h
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:61
> ] location of libptscotch: /home/garth/local/lib/libptscotch.so
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:63
> ] location of libptscotcherr: /home/garth/local/lib/libptscotcherr.so
> -- Performing test SCOTCH_TEST_RUNS
> -- Performing test SCOTCH_TEST_RUNS - Failed
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:172
> ] SCOTCH_TEST_LIB_COMPILED = FALSE
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:174
> ] SCOTCH_TEST_LIB_COMPILE_OUTPUT = Change Dir:
> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp
>
> Run Build Command:/usr/bin/make "cmTryCompileExec/fast"
> /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make
> CMakeFiles/cmTryCompileExec.dir/build
> make[1]: Entering directory
> `/home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp'
> /usr/bin/cmake -E cmake_progress_report
> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp/CMakeFiles
> 1
> Building CXX object CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o
> /usr/bin/c++    -I/home/garth/local/include -I/usr/lib/openmpi/include
> -I/usr/lib/openmpi/include/openmpi   -o
> CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o -c
> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/scotch_test_lib.cpp
> Linking CXX executable cmTryCompileExec
> /usr/bin/cmake -E cmake_link_script
> CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1
> /usr/bin/c++
> CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o  -o
> cmTryCompileExec -rdynamic -L/home/garth/local/lib -lptscotch
> -lptscotcherr /usr/lib/openmpi/lib/libmpi_cxx.so
> /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so
> /usr/lib/openmpi/lib/libopen-pal.so -ldl -lnsl -lutil -lm -ldl -lnsl
> -lutil -lm -Wl,-rpath,/home/garth/local/lib:/usr/lib/openmpi/lib
> /home/garth/local/lib/libptscotch.so: undefined reference to `gzclose'
> /home/garth/local/lib/libptscotch.so: undefined reference to `gzwrite'
> /home/garth/local/lib/libptscotch.so: undefined reference to `gzdopen'
> /home/garth/local/lib/libptscotch.so: undefined reference to `gzsetparams'
> /home/garth/local/lib/libptscotch.so: undefined reference to `gzread'
> collect2: ld returned 1 exit status
> make[1]: *** [cmTryCompileExec] Error 1
> make[1]: Leaving directory
> `/home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp'
> make: *** [cmTryCompileExec/fast] Error 2
>
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:176
> ] SCOTCH_TEST_LIB_EXITCODE =
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:178
> ] SCOTCH_TEST_LIB_OUTPUT =
> -- Found ZLIB: /usr/include
> -- Performing test SCOTCH_ZLIB_TEST_RUNS
> -- Performing test SCOTCH_TEST_RUNS - Failed
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:215
> ] SCOTCH_TEST_LIB_COMPILED = FALSE
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:217
> ] SCOTCH_TEST_LIB_COMPILE_OUTPUT = Change Dir:
> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp
>
> Run Build Command:/usr/bin/make "cmTryCompileExec/fast"
> /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make
> CMakeFiles/cmTryCompileExec.dir/build
> make[1]: Entering directory
> `/home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp'
> /usr/bin/cmake -E cmake_progress_report
> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp/CMakeFiles
> 1
> Building CXX object CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o
> /usr/bin/c++    -I/home/garth/local/include -I/usr/lib/openmpi/include
> -I/usr/lib/openmpi/include/openmpi   -o
> CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o -c
> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/scotch_test_lib.cpp
> Linking CXX executable cmTryCompileExec
> /usr/bin/cmake -E cmake_link_script
> CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1
> /usr/bin/c++
> CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o  -o
> cmTryCompileExec -rdynamic -L/home/garth/local/lib -lptscotch
> -lptscotcherr /usr/lib/openmpi/lib/libmpi_cxx.so
> /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so
> /usr/lib/openmpi/lib/libopen-pal.so -ldl -lnsl -lutil -lm -ldl -lnsl
> -lutil -lm -Wl,-rpath,/home/garth/local/lib:/usr/lib/openmpi/lib
> /home/garth/local/lib/libptscotch.so: undefined reference to `gzclose'
> /home/garth/local/lib/libptscotch.so: undefined reference to `gzwrite'
> /home/garth/local/lib/libptscotch.so: undefined reference to `gzdopen'
> /home/garth/local/lib/libptscotch.so: undefined reference to `gzsetparams'
> /home/garth/local/lib/libptscotch.so: undefined reference to `gzread'
> collect2: ld returned 1 exit status
> make[1]: *** [cmTryCompileExec] Error 1
> make[1]: Leaving directory
> `/home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp'
> make: *** [cmTryCompileExec/fast] Error 2
>
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:219
> ] SCOTCH_TEST_LIB_EXITCODE =
> -- [
> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:221
> ] SCOTCH_TEST_LIB_OUTPUT =
> -- SCOTCH could not be found. Be sure to set SCOTCH_DIR.  (missing:
> SCOTCH_TEST_RUNS)
>
>
> On 26/01/11 16:07, Johannes Ring wrote:
>> On Wed, Jan 26, 2011 at 4:56 PM, Garth N. Wells <gnw20@xxxxxxxxx> wrote:
>>> I don't what has change with FindScotchPT, but it seem broken. Not sure
>>> what's happen, but the test might not be linking with libz properly.
>>
>> Try to configure with -DSCOTCH_DEBUG:BOOL=ON and see if you can spot
>> the problem. You should remove the CMake cache first.
>>
>> Johannes
>