dolfin team mailing list archive

["Garth N. Wells" <gnw20@xxxxxxxxx>]

On 26/01/11 17:56, Johannes Ring wrote:
> On Wed, Jan 26, 2011 at 5:12 PM, Garth N. Wells <gnw20@xxxxxxxxx> wrote:
>> Here's the output. It looks something like the zlib test version not
>> adding the zlib flags. I can compile the tests by hand on the command line.
> 
> Sorry, my fault. Should be fixed now.
> 

Thanks. Works now.

Garth

> Johannes
> 
>> Garth
>>
>>
>> -- Checking for package 'SCOTCH-PT'
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:59
>> ] location of ptscotch.h: /home/garth/local/include/ptscotch.h
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:61
>> ] location of libptscotch: /home/garth/local/lib/libptscotch.so
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:63
>> ] location of libptscotcherr: /home/garth/local/lib/libptscotcherr.so
>> -- Performing test SCOTCH_TEST_RUNS
>> -- Performing test SCOTCH_TEST_RUNS - Failed
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:172
>> ] SCOTCH_TEST_LIB_COMPILED = FALSE
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:174
>> ] SCOTCH_TEST_LIB_COMPILE_OUTPUT = Change Dir:
>> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp
>>
>> Run Build Command:/usr/bin/make "cmTryCompileExec/fast"
>> /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make
>> CMakeFiles/cmTryCompileExec.dir/build
>> make[1]: Entering directory
>> `/home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp'
>> /usr/bin/cmake -E cmake_progress_report
>> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp/CMakeFiles
>> 1
>> Building CXX object CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o
>> /usr/bin/c++    -I/home/garth/local/include -I/usr/lib/openmpi/include
>> -I/usr/lib/openmpi/include/openmpi   -o
>> CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o -c
>> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/scotch_test_lib.cpp
>> Linking CXX executable cmTryCompileExec
>> /usr/bin/cmake -E cmake_link_script
>> CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1
>> /usr/bin/c++
>> CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o  -o
>> cmTryCompileExec -rdynamic -L/home/garth/local/lib -lptscotch
>> -lptscotcherr /usr/lib/openmpi/lib/libmpi_cxx.so
>> /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so
>> /usr/lib/openmpi/lib/libopen-pal.so -ldl -lnsl -lutil -lm -ldl -lnsl
>> -lutil -lm -Wl,-rpath,/home/garth/local/lib:/usr/lib/openmpi/lib
>> /home/garth/local/lib/libptscotch.so: undefined reference to `gzclose'
>> /home/garth/local/lib/libptscotch.so: undefined reference to `gzwrite'
>> /home/garth/local/lib/libptscotch.so: undefined reference to `gzdopen'
>> /home/garth/local/lib/libptscotch.so: undefined reference to `gzsetparams'
>> /home/garth/local/lib/libptscotch.so: undefined reference to `gzread'
>> collect2: ld returned 1 exit status
>> make[1]: *** [cmTryCompileExec] Error 1
>> make[1]: Leaving directory
>> `/home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp'
>> make: *** [cmTryCompileExec/fast] Error 2
>>
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:176
>> ] SCOTCH_TEST_LIB_EXITCODE =
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:178
>> ] SCOTCH_TEST_LIB_OUTPUT =
>> -- Found ZLIB: /usr/include
>> -- Performing test SCOTCH_ZLIB_TEST_RUNS
>> -- Performing test SCOTCH_TEST_RUNS - Failed
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:215
>> ] SCOTCH_TEST_LIB_COMPILED = FALSE
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:217
>> ] SCOTCH_TEST_LIB_COMPILE_OUTPUT = Change Dir:
>> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp
>>
>> Run Build Command:/usr/bin/make "cmTryCompileExec/fast"
>> /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make
>> CMakeFiles/cmTryCompileExec.dir/build
>> make[1]: Entering directory
>> `/home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp'
>> /usr/bin/cmake -E cmake_progress_report
>> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp/CMakeFiles
>> 1
>> Building CXX object CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o
>> /usr/bin/c++    -I/home/garth/local/include -I/usr/lib/openmpi/include
>> -I/usr/lib/openmpi/include/openmpi   -o
>> CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o -c
>> /home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/scotch_test_lib.cpp
>> Linking CXX executable cmTryCompileExec
>> /usr/bin/cmake -E cmake_link_script
>> CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1
>> /usr/bin/c++
>> CMakeFiles/cmTryCompileExec.dir/scotch_test_lib.cpp.o  -o
>> cmTryCompileExec -rdynamic -L/home/garth/local/lib -lptscotch
>> -lptscotcherr /usr/lib/openmpi/lib/libmpi_cxx.so
>> /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so
>> /usr/lib/openmpi/lib/libopen-pal.so -ldl -lnsl -lutil -lm -ldl -lnsl
>> -lutil -lm -Wl,-rpath,/home/garth/local/lib:/usr/lib/openmpi/lib
>> /home/garth/local/lib/libptscotch.so: undefined reference to `gzclose'
>> /home/garth/local/lib/libptscotch.so: undefined reference to `gzwrite'
>> /home/garth/local/lib/libptscotch.so: undefined reference to `gzdopen'
>> /home/garth/local/lib/libptscotch.so: undefined reference to `gzsetparams'
>> /home/garth/local/lib/libptscotch.so: undefined reference to `gzread'
>> collect2: ld returned 1 exit status
>> make[1]: *** [cmTryCompileExec] Error 1
>> make[1]: Leaving directory
>> `/home/garth/code/fenics/dolfin.d/dolfin-all/build/CMakeFiles/CMakeTmp'
>> make: *** [cmTryCompileExec/fast] Error 2
>>
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:219
>> ] SCOTCH_TEST_LIB_EXITCODE =
>> -- [
>> /home/garth/code/fenics/dolfin.d/dolfin-all/cmake/modules/FindScotchPT.cmake:221
>> ] SCOTCH_TEST_LIB_OUTPUT =
>> -- SCOTCH could not be found. Be sure to set SCOTCH_DIR.  (missing:
>> SCOTCH_TEST_RUNS)
>>
>>
>> On 26/01/11 16:07, Johannes Ring wrote:
>>> On Wed, Jan 26, 2011 at 4:56 PM, Garth N. Wells <gnw20@xxxxxxxxx> wrote:
>>>> I don't what has change with FindScotchPT, but it seem broken. Not sure
>>>> what's happen, but the test might not be linking with libz properly.
>>>
>>> Try to configure with -DSCOTCH_DEBUG:BOOL=ON and see if you can spot
>>> the problem. You should remove the CMake cache first.
>>>
>>> Johannes
>>