dolfin team mailing list archive

[Harish Narayanan <harish.mlists@xxxxxxxxx>]

On 10/21/11 11:43 AM, Anders Logg wrote:
> On Fri, Oct 21, 2011 at 11:27:57AM +0200, Anders Logg wrote:
>> On Fri, Oct 21, 2011 at 10:41:57AM +0200, Martin Sandve Alnæs wrote:
>>> If this cannot be fixed quickly, can you please revert the commit that
>>> caused it?
>>>
>>> In general, quickly fixing or reverting when stuff is broken is the
>>> only way we can keep a consistently green buildbot. Having the
>>> buildbots in a red state over time hinders further development in
>>> maintrunk and/or hides problems caused by additional commits. This
>>> time the build problem did hide test breakage caused by both me and
>>> Anders, and the fixes were then much delayed. I think it is worth
>>> considering requiring quick revert of all developers (I know I've
>>> sinned there myself).
>>
>> Sorry for breaking the buildbot, but I've had trouble with my own
>> personal buildbot not running at all so I couldn't test there first.
>> (And the thing that currently breaks works fine here with me.)
>>
>> I'm not sure reverting now is a good idea since it is a big change
>> that is important for the book (cleanup of the Krylov methods and
>> preconditioner options).
>>
>> It looks to me like something needs to be updated or rebuilt on the
>> buildbot. The unit test that fails on the buildbot (quadrature on cut
>> cells using CGAL) works fine here, and also for Andre. Maybe the
>> buildbot just needs a new installation of CGAL and/or boost?
> 
> The error message seems to indicate a problem with boost::assign in
> combination with CGAL. Maybe somehow the inclusion of
> 
>   boost/assign/list_of.hpp
> 
> in uBLASFactory.h and MTL4Factory.h propagated to the unit test and
> that breaks with CGAL.
> 
> I've worked around the inclusion of this header file now (only
> included in .cpp files). Can those of you for whom this breaks try
> again?

It now compiles, but I receive the following error when attempting to
run the test.

megatr0n:cpp harish$ ./test_quadrature
[megatr0n:74469] *** Process received signal ***
[megatr0n:74469] Signal: Segmentation fault: 11 (11)
[megatr0n:74469] Signal code:  (0)
[megatr0n:74469] Failing at address: 0x0
[megatr0n:74469] [ 0] 2   libsystem_c.dylib
0x00007fff92040cfa _sigtramp + 26
[megatr0n:74469] [ 1] 3   ???
0xc000000000000000 0x0 + 13835058055282163712
[megatr0n:74469] [ 2] 4   test_quadrature
0x0000000108ac1a22
_ZN4CGAL18Box_intersection_d21modified_two_way_scanIN9__gnu_cxx17__normal_iteratorIPNS_7Nef_boxINS_13SNC_decoratorINS_13SNC_structureINS_5EpeckENS_17SNC_indexed_itemsEbEEEEEESt6vectorISB_SaISB_EEEESG_NS_36binop_intersection_test_segment_treeISA_E24Bop_edge0_edge1_callbackINS_16Binary_operationIS9_E22Intersection_call_backISA_NS_16Nef_polyhedron_3IS7_S8_bE2ORENS_18ID_support_handlerIS8_SA_EEEEEENS0_18Predicate_traits_dINS0_12Box_traits_dISB_EELb1EEEEEvT_SY_T0_SZ_T1_T2_ib
+ 162
[megatr0n:74469] [ 3] 5   test_quadrature
0x0000000108b0332b
_ZN4CGAL18Box_intersection_d12segment_treeIN9__gnu_cxx17__normal_iteratorIPNS_7Nef_boxINS_13SNC_decoratorINS_13SNC_structureINS_5EpeckENS_17SNC_indexed_itemsEbEEEEEESt6vectorISB_SaISB_EEEESG_NS_36binop_intersection_test_segment_treeISA_E24Bop_edge0_edge1_callbackINS_16Binary_operationIS9_E22Intersection_call_backISA_NS_16Nef_polyhedron_3IS7_S8_bE2ORENS_18ID_support_handlerIS8_SA_EEEEEEdNS0_18Predicate_traits_dINS0_12Box_traits_dISB_EELb1EEEEEvT_SY_T0_SZ_T2_S10_T1_T3_lib
+ 1147
[megatr0n:74469] [ 4] 6   test_quadrature
0x0000000108b05ef5
_ZN4CGAL36binop_intersection_test_segment_treeINS_13SNC_decoratorINS_13SNC_structureINS_5EpeckENS_17SNC_indexed_itemsEbEEEEEclINS_16Binary_operationIS5_E22Intersection_call_backIS6_NS_16Nef_polyhedron_3IS3_S4_bE2ORENS_18ID_support_handlerIS4_S6_EEEEEEvRT_SJ_RS5_SK_
+ 969
[megatr0n:74469] [ 5] 7   test_quadrature
0x0000000108b073be
_ZN4CGAL16Binary_operationINS_13SNC_structureINS_5EpeckENS_17SNC_indexed_itemsEbEEEclINS_16Nef_polyhedron_3IS2_S3_bE2OREEEvPNS_17SNC_point_locatorINS_13SNC_decoratorIS4_EEEERKS4_PKSD_SG_SI_RKT_
+ 3536
[megatr0n:74469] [ 6] 8   test_quadrature
0x0000000108b077e9
_ZNK4CGAL16Nef_polyhedron_3INS_5EpeckENS_17SNC_indexed_itemsEbE4joinERKS3_
+ 343
[megatr0n:74469] [ 7] 9   test_quadrature
0x0000000108b07855
_ZN4CGAL16Nef_polyhedron_3INS_5EpeckENS_17SNC_indexed_itemsEbEpLERKS3_ + 29
[megatr0n:74469] [ 8] 10  test_quadrature
0x0000000108b07947
_ZN10BaryCenter24add_disjoint_polyhedronsESt6vectorIiSaIiEERS0_IN4CGAL16Nef_polyhedron_3INS3_5EpeckENS3_17SNC_indexed_itemsEbEESaIS7_EERS0_IdSaIdEERS0_IN6dolfin5PointESaISF_EE
+ 133
[megatr0n:74469] [ 9] 11  test_quadrature
0x0000000108b09d2e _ZN10BaryCenter21testSimplePolyhedronsEv + 8758
[megatr0n:74469] [10] 12  libcppunit-1.12.1.dylib
0x000000010a336990 _ZNK7CppUnit21TestCaseMethodFunctorclEv + 38
[megatr0n:74469] [11] 13  libcppunit-1.12.1.dylib
0x000000010a32e5f4
_ZN7CppUnit16DefaultProtector7protectERKNS_7FunctorERKNS_16ProtectorContextE
+ 36
[megatr0n:74469] [12] 14  libcppunit-1.12.1.dylib
0x000000010a334721 _ZNK7CppUnit14ProtectorChain14ProtectFunctorclEv + 25
[megatr0n:74469] [13] 15  libcppunit-1.12.1.dylib
0x000000010a3343b0
_ZN7CppUnit14ProtectorChain7protectERKNS_7FunctorERKNS_16ProtectorContextE
+ 484
[megatr0n:74469] [14] 16  libcppunit-1.12.1.dylib
0x000000010a33bef0
_ZN7CppUnit10TestResult7protectERKNS_7FunctorEPNS_4TestERKSs + 62
[megatr0n:74469] [15] 17  libcppunit-1.12.1.dylib
0x000000010a336595 _ZN7CppUnit8TestCase3runEPNS_10TestResultE + 309
[megatr0n:74469] [16] 18  libcppunit-1.12.1.dylib
0x000000010a336e15
_ZN7CppUnit13TestComposite15doRunChildTestsEPNS_10TestResultE + 81
[megatr0n:74469] [17] 19  libcppunit-1.12.1.dylib
0x000000010a336d41 _ZN7CppUnit13TestComposite3runEPNS_10TestResultE + 37
[megatr0n:74469] [18] 20  libcppunit-1.12.1.dylib
0x000000010a336e15
_ZN7CppUnit13TestComposite15doRunChildTestsEPNS_10TestResultE + 81
[megatr0n:74469] [19] 21  libcppunit-1.12.1.dylib
0x000000010a336d41 _ZN7CppUnit13TestComposite3runEPNS_10TestResultE + 37
[megatr0n:74469] [20] 22  libcppunit-1.12.1.dylib
0x000000010a33be80 _ZN7CppUnit10TestResult7runTestEPNS_4TestE + 40
[megatr0n:74469] [21] 23  libcppunit-1.12.1.dylib
0x000000010a33e300 _ZN7CppUnit10TestRunner3runERNS_10TestResultERKSs + 54
[megatr0n:74469] [22] 24  test_quadrature
0x0000000108a14682 main + 210
[megatr0n:74469] [23] 25  test_quadrature
0x0000000108a142f4 start + 52
[megatr0n:74469] [24] 26  ???
0x0000000000000001 0x0 + 1
[megatr0n:74469] *** End of error message ***
Segmentation fault: 11

Harish