On Thu, Aug 19, 2010 at 04:39:11PM -0400, Paul Barbone wrote:
Paul Barbone wrote:
Anders Logg wrote:
On Thu, Aug 19, 2010 at 03:48:12PM -0400, Paul Barbone wrote:
Anders Logg wrote:
On Thu, Aug 19, 2010 at 02:46:47PM -0400, Paul Barbone wrote:
Anders Logg wrote:
On Thu, Aug 19, 2010 at 07:03:51PM +0100, Garth N. Wells wrote:
On Thu, 2010-08-19 at 17:58 +0000, noreply@xxxxxxxxxxxxx wrote:
------------------------------------------------------------
revno: 390
committer: Anders Logg <logg@xxxxxxxxx>
branch nick: dorsal
timestamp: Thu 2010-08-19 19:55:20 +0200
message:
Remove hypre, scalapack and blacs from petsc.package for now,
not working on this shitty OS becuase of Fortran issues.
They're nice to have - can you just install a Fortran compiler?
Garth
I tried installing g95 from macports but it just hung. But even if I
do that, I probably need to build MPI with Fortran support which
probably will lead to new problems.
Has anyone tried getting PETSc with Fortfran (for Hypre)
to work on OS
X?
If we can't get it to work, we'll configure it so that a OS X gets a
stripped down version and the rest of us can enjoy a full-featured
PETSc.
Maybe.... With Garth's recent changes, dolfin just compiled on my
leopard system. (Thanks Garth!) Still working through the rest of
the packages...
About petsc: I'm not sure what you mean by "work", but if "work"
means "compile", then yes. With...
export CC=gcc-mp-4.4
export CXX=g++-mp-4.4
...defined in the *.platform file. As I'm not yet in a position to
test, I can't tell if it "works".
-Paul
Don't you need MPI compilers?
Are you using -download-hypre=1?
That fails for me since Hypre requires that MPI was compiled with
Fortran support. Did you compile MPI yourself?
So, take whatever I tell you with a pinch of salt, because I don't
quite know what I'm doing. Having said that, the following
*.platform file using stable_build=false "installed" and eventually
gave the message:
---------------------------------------------------------
DOLFIN successfully compiled and installed in
/Users/barbone/Research/Computation/FEniCS/
---------------------------------------------------------
I have yet to test it...
Here's the *.platform file that I used on my leopard system: (Note
the ugly hardwired ARMADILLO_DIR setting.)
---------------------------------------------------------
# Mac OS X 10.5 with MacPorts
# This build script assumes that you have installed Xcode.app and
# X11.app from Mac OS's original install disc. This gives you access
# to a recent gcc, among other things. In order to have easy access to
# a lot of useful Free Software, this script also assumes you have
# installed MacPorts (from http://www.macports.org/).
#
# Via Macports, you need to install the following packages:
#
# sudo port install wget autogen readline pkgconfig libxml2 libtool \
# cgal gmp zlib python26 swig-python py26-numpy bzr bzrtools git-core \
# scons ginac boost +python26 vtk-devel +python26 suitesparse \
# py26-scientific
#
# Before proceeding, you need to make sure that Python 2.6 installed
# by MacPorts is the default one on your machine:
#
# sudo port install python_select # sudo python_select python26
#
##
# Platform specific variables
default PETSC_ARCH=darwin9.2.0-cxx-opt
default GMP_ARCH=none-apple-darwin
# default SCOTCH_ARCH=i686_mac_darwin8
# default UMFPACK_DIR=/sw
# default BOOST_DIR=/sw
# default PETSC_ARCH=darwin10.0.0-cxx-opt
default SCOTCH_ARCH=i686_mac_darwin8
default BOOST_DIR=/opt/local
default UMFPACK_DIR=/opt/local
default CGAL_DIR=/opt/local
default GMP_DIR=/opt/local
# PEB ADDED - SYSTEM SPECIFIC:
# default ARMADILLO_DIR=/opt/local
default ARMADILLO_DIR=/Users/barbone/Research/Computation/FEniCS
# END PEB ADDED-----------------------------------------
# export CC=gcc-4
# export CXX=g++4
export CC=gcc-mp-4.4
export CXX=g++-mp-4.4
export PKG_CONFIG_PATH=/opt/local/lib/pkgconfig:${PKG_CONFIG_PATH}
# export PKG_CONFIG_PATH=/sw/lib/pkgconfig
# Define the packages this platform needs (for 10.5 ?)
PACKAGES=(
petsc
slepc
armadillo
mtl
fiat
ferari
ufc
ufl
ffc
viper
instant
dolfin
)
---------------------------------------------------------
What's in your petsc.package? Which options does it use for PETSc?
No hypre, apparently. Here it is:
NAME=petsc-3.0.0-p12
SOURCE=http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/
PACKING=.tar.gz
BUILDCHAIN=autotools
package_specific_setup () {
export PETSC_DIR=${PWD}
./config/configure.py COPTFLAGS=-O3 --with-debugging=0
--with-shared=1 --with-clanguage
=cxx --download-umfpack=1 --prefix=${INSTALL_PATH}
}
package_specific_install () {
if [ -e ${INSTALL_PATH}/lib/${PETSC_ARCH} ]
then
ln -sf ${INSTALL_PATH}/lib/${PETSC_ARCH}/* ${INSTALL_PATH}/lib/
fi
}
package_specific_register () {
export PETSC_DIR=${INSTALL_PATH}
export PETSC_ARCH_TEMP=${PETSC_ARCH}
unset PETSC_ARCH
}
Seems to be working :-)... Again, this is on leopard (10.5), not
snowleopard (10.6). I had to add to dolfin.conf the line:
export BOOST_DIR=/opt/local
Afterward, it seemed to run ok. I've tried only Poisson and
nonlinear poisson so far, and only through python. The 'q' didn't
work on the interactive graphics, but I can live with that... :-)
Thanks Garth and Harish for endless patience. Anders - let me know
if I can provide more info...
Note that my installation doesn't use scotch, swiginac, trilinos, or
syfi.
Good to hear!
If you want, you could experiment with adding --download-hypre=1 in
the petsc.package file. I assume you will run into the same problem
that I couldn't solve (needing to get an MPI build with Fortran). Let
me know if/how it works.
