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[tmodes <811864@xxxxxxxxxxxxxxxxxx>]

The observed behaviour is related to the window manager. First it does not support the tray area. Second the virtual desktop seems to be implemented by only minimizing the windows, which are not on the active desktop.
wxWidgets 2.8 does not offer an option to get an information about the availability of the tray area. So deactivate the tray icon on *nix, this should restore the old behaviour. -> therefore setting to incomplete.
If there are more information set the status to new again.

** Changed in: hugin
       Status: New => Incomplete

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https://bugs.launchpad.net/bugs/811864

Title:
  PTBatcherGUI annoying window handling

Status in Hugin - Panorama Tools GUI:
  Incomplete

Bug description:
  With 2011.2.0 the old <Stich Now!> is gone, I am using PTBatcherGUI
  instead.

  The window handling is very annoying. The main autobatcher window and
  the progress window are automatically if switch to another virtual
  desktop and back again.

  It would also be very nice if closing the hugin apllication would
  close (the not manually started) PTBatcherGUI instance, too.

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