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[ben k <bskaplan14@xxxxxxxxx>]

I get the error as well (Eclipse 3.4 64-bit, PyDev 1.3.20). After
repeating the error 17 times, I've found that there are 3 different
compile tasks where this will occur. In addition to the
PythonPathHelper.isValidSourceFile that Thomas and Servilio reported,
I've also found:

C2:780  !
org.python.pydev.editor.codecompletion.revisited.PythonPathHelper.resolveModule(Ljava/lang/String;Z)Ljava/lang/String;
(670 bytes)


C2:422      org.eclipse.core.internal.dtree.DataTreeNode.forwardDeltaWith([Lorg/eclipse/core/internal/dtree/AbstractDataTreeNode;[Lorg/eclipse/core/internal/dtree/AbstractDataTreeNode;Lorg/eclipse/core/internal/dtree/IComparator;)[Lorg/eclipse/core/internal/dtree/AbstractDataTreeNode; (469 bytes)

-- 
VM crashes while PyDev scans the system Python libraries
https://bugs.launchpad.net/bugs/258088
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Status in “openjdk-6” source package in Ubuntu: New

Bug description:
Using:

 * Eclipse 3.4.0 (Build id: I20080617-2000) for Linux GTK x86_64 from eclipse.org
 * OpenJDK 6b11-2ubuntu2
 * PyDev 1.3.19

This happens after adding a Python interpreter in the PyDev section of the preferences and clicking the OK button of the preferences dialog, while PyDev is scanning the Python system libraries (for both python2.4 and python2.5). In the crash report the "Problematic frame" is always the same as in the attached report.