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[Bug 412562] [NEW] Artemis crashes at starup

 

Public bug reported:

---------------  T H R E A D  ---------------

Current thread (0x08d1c000):  JavaThread "main" [_thread_in_vm,
id=30777, stack(0xb76a3000,0xb76f4000)]

siginfo:si_signo=SIGSEGV: si_errno=0, si_code=1 (SEGV_MAPERR),
si_addr=0x00000000

Registers:
EAX=0x00000000, EBX=0xb7aa9ff4, ECX=0x08d1cb14, EDX=0x08d1a988
ESP=0xb76f2644, EBP=0xb76f26a8, ESI=0x08d1c000, EDI=0x93e70978
EIP=0xb78ce35d, CR2=0x00000000, EFLAGS=0x00010296

Top of Stack: (sp=0xb76f2644)
0xb76f2644:   00000001 08d1c000 00000000 08d1cb0c
0xb76f2654:   08d1cb10 006f26a8 b78c5d93 00000000
0xb76f2664:   00000000 08d1cb0c 08d1c000 000003a4
0xb76f2674:   08d1c000 08d1cb08 00000667 b7a795d4
0xb76f2684:   08d1cb18 08d1c000 08d1cb08 0000017b
0xb76f2694:   b7a76e08 08d1c000 b4dd1758 b4dcc193
0xb76f26a4:   b4dcbf4d b76f26d8 b4daeca8 08d1c0f4
0xb76f26b4:   00000000 b4dcc263 b4dcd35a 94231350 

Instructions: (pc=0xb78ce35d)
0xb78ce34d:   45 ac 85 c0 0f 84 81 01 00 00 8b 45 0c 83 ec 0c
0xb78ce35d:   8b 38 57 e8 0b 0c fe ff 83 c4 10 89 c7 85 c0 0f 

Stack: [0xb76a3000,0xb76f4000],  sp=0xb76f2644,  free space=317k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
V  [libjvm.so+0x1b435d]
C  [libmawt.so+0xeca8]  Java_java_awt_Component_initIDs+0x2f8
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::StubRoutines (1)
V  [libjvm.so+0x194c27]
V  [libjvm.so+0x26db89]
V  [libjvm.so+0x193eff]
V  [libjvm.so+0x16fd86]
V  [libjvm.so+0x16fdf1]
V  [libjvm.so+0x170d35]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x1d5ba1]
V  [libjvm.so+0x1a7ee8]
C  [java+0x2437]
C  [java+0x3058]  JavaMain+0xbc8
C  [libpthread.so.0+0x650f]

Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::StubRoutines (1)

---------------  P R O C E S S  ---------------

Java Threads: ( => current thread )
  0x08d63000 JavaThread "Low Memory Detector" daemon [_thread_blocked, id=30783, stack(0xb4f0d000,0xb4f5e000)]
  0x08d58400 JavaThread "CompilerThread0" daemon [_thread_blocked, id=30782, stack(0xb4f5e000,0xb4fdf000)]
  0x08d57000 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=30781, stack(0xb4fdf000,0xb5030000)]
  0x08d51000 JavaThread "Finalizer" daemon [_thread_blocked, id=30780, stack(0xb5076000,0xb50c7000)]
  0x08d4cc00 JavaThread "Reference Handler" daemon [_thread_blocked, id=30779, stack(0xb50c7000,0xb5118000)]
=>0x08d1c000 JavaThread "main" [_thread_in_vm, id=30777, stack(0xb76a3000,0xb76f4000)]

Other Threads:
  0x08d4b400 VMThread [stack: 0xb5118000,0xb5199000] [id=30778]
  0x08d64800 WatcherThread [stack: 0xb4e8c000,0xb4f0d000] [id=30784]

VM state:not at safepoint (normal execution)

VM Mutex/Monitor currently owned by a thread: None

Heap
 def new generation   total 1408K, used 364K [0x70550000, 0x706d0000, 0x72bc0000)
  eden space 1280K,  28% used [0x70550000, 0x705ab318, 0x70690000)
  from space 128K,   0% used [0x70690000, 0x70690000, 0x706b0000)
  to   space 128K,   0% used [0x706b0000, 0x706b0000, 0x706d0000)
 tenured generation   total 18944K, used 0K [0x72bc0000, 0x73e40000, 0x8f950000)
   the space 18944K,   0% used [0x72bc0000, 0x72bc0000, 0x72bc0200, 0x73e40000)
 compacting perm gen  total 12288K, used 78K [0x8f950000, 0x90550000, 0x93950000)
   the space 12288K,   0% used [0x8f950000, 0x8f963ba8, 0x8f963c00, 0x90550000)
    ro space 8192K,  89% used [0x93950000, 0x9407cd88, 0x9407ce00, 0x94150000)
    rw space 12288K,  59% used [0x94150000, 0x94879538, 0x94879600, 0x94d50000)

Dynamic libraries:
08048000-08051000 r-xp 00000000 08:01 2024866    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/bin/java
08051000-08052000 r--p 00008000 08:01 2024866    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/bin/java
08052000-08053000 rw-p 00009000 08:01 2024866    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/bin/java
08d15000-08e0d000 rw-p 08d15000 00:00 0          [heap]
70550000-706d0000 rwxp 70550000 00:00 0 
706d0000-72bc0000 rwxp 706d0000 00:00 0 
72bc0000-73e40000 rwxp 72bc0000 00:00 0 
73e40000-8f950000 rwxp 73e40000 00:00 0 
8f950000-90550000 rwxp 8f950000 00:00 0 
90550000-93950000 rwxp 90550000 00:00 0 
93950000-9407d000 r--s 00001000 08:01 2024812    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/classes.jsa
9407d000-94150000 rwxp 9407d000 00:00 0 
94150000-9487a000 rw-p 0072e000 08:01 2024812    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/classes.jsa
9487a000-94d50000 rwxp 9487a000 00:00 0 
94d50000-94e47000 rw-p 00e58000 08:01 2024812    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/classes.jsa
94e47000-95150000 rwxp 94e47000 00:00 0 
95150000-95154000 r-xs 00f4f000 08:01 2024812    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/classes.jsa
95154000-95550000 rwxp 95154000 00:00 0 
b4b95000-b4b99000 r-xp 00000000 08:01 1664578    /usr/lib/libXdmcp.so.6.0.0
b4b99000-b4b9a000 rw-p 00003000 08:01 1664578    /usr/lib/libXdmcp.so.6.0.0
b4b9a000-b4bb1000 r-xp 00000000 08:01 188439     /usr/lib/libxcb.so.1.0.0
b4bb1000-b4bb2000 r--p 00016000 08:01 188439     /usr/lib/libxcb.so.1.0.0
b4bb2000-b4bb3000 rw-p 00017000 08:01 188439     /usr/lib/libxcb.so.1.0.0
b4bb3000-b4bb4000 r-xp 00000000 08:01 188437     /usr/lib/libxcb-xlib.so.0.0.0
b4bb4000-b4bb5000 r--p 00000000 08:01 188437     /usr/lib/libxcb-xlib.so.0.0.0
b4bb5000-b4bb6000 rw-p 00001000 08:01 188437     /usr/lib/libxcb-xlib.so.0.0.0
b4bb6000-b4ca1000 r-xp 00000000 08:01 1663749    /usr/lib/libX11.so.6.2.0
b4ca1000-b4ca2000 r--p 000ea000 08:01 1663749    /usr/lib/libX11.so.6.2.0
b4ca2000-b4ca4000 rw-p 000eb000 08:01 1663749    /usr/lib/libX11.so.6.2.0
b4ca4000-b4ca5000 rw-p b4ca4000 00:00 0 
b4ca5000-b4cb2000 r-xp 00000000 08:01 1664582    /usr/lib/libXext.so.6.4.0
b4cb2000-b4cb4000 rw-p 0000c000 08:01 1664582    /usr/lib/libXext.so.6.4.0
b4cc3000-b4d9e000 r-xp 00000000 08:01 2024844    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libmlib_image.so
b4d9e000-b4d9f000 r--p 000da000 08:01 2024844    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libmlib_image.so
b4d9f000-b4da0000 rw-p 000db000 08:01 2024844    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libmlib_image.so
b4da0000-b4dcf000 r-xp 00000000 08:01 2031626    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so
b4dcf000-b4dd2000 rw-p 0002e000 08:01 2031626    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so
b4dd2000-b4dd3000 rw-p b4dd2000 00:00 0 
b4dd3000-b4e57000 r-xp 00000000 08:01 2024813    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libawt.so
b4e57000-b4e58000 r--p 00083000 08:01 2024813    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libawt.so
b4e58000-b4e5e000 rw-p 00084000 08:01 2024813    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libawt.so
b4e5e000-b4e83000 rw-p b4e5e000 00:00 0 
b4e83000-b4e8c000 r--s 00065000 08:01 1729404    /usr/share/java/gnome-java-bridge.jar
b4e8c000-b4e8d000 ---p b4e8c000 00:00 0 
b4e8d000-b4f0d000 rwxp b4e8d000 00:00 0 
b4f0d000-b4f10000 ---p b4f0d000 00:00 0 
b4f10000-b4f5e000 rwxp b4f10000 00:00 0 
b4f5e000-b4f61000 ---p b4f5e000 00:00 0 
b4f61000-b4fdf000 rwxp b4f61000 00:00 0 
b4fdf000-b4fe2000 ---p b4fdf000 00:00 0 
b4fe2000-b5030000 rwxp b4fe2000 00:00 0 
b5030000-b5037000 r--s 00000000 08:01 1672194    /usr/lib/gconv/gconv-modules.cache
b5037000-b5076000 r--p 00000000 08:01 1688067    /usr/lib/locale/en_US.utf8/LC_CTYPE
b5076000-b5079000 ---p b5076000 00:00 0 
b5079000-b50c7000 rwxp b5079000 00:00 0 
b50c7000-b50ca000 ---p b50c7000 00:00 0 
b50ca000-b5118000 rwxp b50ca000 00:00 0 
b5118000-b5119000 ---p b5118000 00:00 0 
b5119000-b5199000 rwxp b5119000 00:00 0 
b5199000-b51cc000 rw-p b5199000 00:00 0 
b51cc000-b535f000 r--s 038b4000 08:01 2024796    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/rt.jar
b535f000-b536d000 rwxp b535f000 00:00 0 
b536d000-b5387000 rwxp b536d000 00:00 0 
b5387000-b5391000 rwxp b5387000 00:00 0 
b5391000-b546e000 rwxp b5391000 00:00 0 
b546e000-b546f000 rwxp b546e000 00:00 0 
b546f000-b5481000 rwxp b546f000 00:00 0 
b5481000-b548b000 rwxp b5481000 00:00 0 
b548b000-b5568000 rwxp b548b000 00:00 0 
b5568000-b556e000 rwxp b5568000 00:00 0 
b556e000-b5588000 rwxp b556e000 00:00 0 
b5588000-b5595000 rwxp b5588000 00:00 0 
b5595000-b5613000 rwxp b5595000 00:00 0 
b5613000-b5693000 rwxp b5613000 00:00 0 
b5693000-b7613000 rwxp b5693000 00:00 0 
b7613000-b761a000 r-xp 00000000 08:01 2024852    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libzip.so
b761a000-b761b000 r--p 00006000 08:01 2024852    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libzip.so
b761b000-b761c000 rw-p 00007000 08:01 2024852    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libzip.so
b761c000-b7640000 r-xp 00000000 08:01 2024835    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libjava.so
b7640000-b7641000 r--p 00023000 08:01 2024835    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libjava.so
b7641000-b7643000 rw-p 00024000 08:01 2024835    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libjava.so
b7643000-b764f000 r-xp 00000000 08:01 2024851    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libverify.so
b764f000-b7650000 ---p 0000c000 08:01 2024851    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libverify.so
b7650000-b7651000 r--p 0000c000 08:01 2024851    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libverify.so
b7651000-b7652000 rw-p 0000d000 08:01 2024851    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libverify.so
b7652000-b765c000 r-xp 00000000 08:01 2056879    /lib/tls/i686/cmov/libnss_files-2.8.90.so
b765c000-b765d000 r--p 00009000 08:01 2056879    /lib/tls/i686/cmov/libnss_files-2.8.90.so
b765d000-b765e000 rw-p 0000a000 08:01 2056879    /lib/tls/i686/cmov/libnss_files-2.8.90.so
b765e000-b7667000 r-xp 00000000 08:01 2056881    /lib/tls/i686/cmov/libnss_nis-2.8.90.so
b7667000-b7668000 r--p 00008000 08:01 2056881    /lib/tls/i686/cmov/libnss_nis-2.8.90.so
b7668000-b7669000 rw-p 00009000 08:01 2056881    /lib/tls/i686/cmov/libnss_nis-2.8.90.so
b7669000-b7670000 r-xp 00000000 08:01 2056877    /lib/tls/i686/cmov/libnss_compat-2.8.90.so
b7670000-b7671000 r--p 00006000 08:01 2056877    /lib/tls/i686/cmov/libnss_compat-2.8.90.so
b7671000-b7672000 rw-p 00007000 08:01 2056877    /lib/tls/i686/cmov/libnss_compat-2.8.90.so
b7672000-b7687000 r-xp 00000000 08:01 2056876    /lib/tls/i686/cmov/libnsl-2.8.90.so
b7687000-b7688000 r--p 00014000 08:01 2056876    /lib/tls/i686/cmov/libnsl-2.8.90.so
b7688000-b7689000 rw-p 00015000 08:01 2056876    /lib/tls/i686/cmov/libnsl-2.8.90.so
b7689000-b768b000 rw-p b7689000 00:00 0 
b768d000-b7692000 rwxp b768d000 00:00 0 
b7692000-b769a000 rw-s 00000000 08:01 1745371    /tmp/hsperfdata_evgeniy/30776
b769a000-b76a1000 r-xp 00000000 08:01 2056886    /lib/tls/i686/cmov/librt-2.8.90.so
b76a1000-b76a2000 r--p 00007000 08:01 2056886    /lib/tls/i686/cmov/librt-2.8.90.so
b76a2000-b76a3000 rw-p 00008000 08:01 2056886    /lib/tls/i686/cmov/librt-2.8.90.so
b76a3000-b76a6000 ---p b76a3000 00:00 0 
b76a6000-b76f4000 rwxp b76a6000 00:00 0 
b76f4000-b7718000 r-xp 00000000 08:01 2056874    /lib/tls/i686/cmov/libm-2.8.90.so
b7718000-b7719000 r--p 00023000 08:01 2056874    /lib/tls/i686/cmov/libm-2.8.90.so
b7719000-b771a000 rw-p 00024000 08:01 2056874    /lib/tls/i686/cmov/libm-2.8.90.so
b771a000-b7a97000 r-xp 00000000 08:01 2024797    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/libjvm.so
b7a97000-b7aaa000 r--p 0037d000 08:01 2024797    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/libjvm.so
b7aaa000-b7ab6000 rw-p 00390000 08:01 2024797    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/libjvm.so
b7ab6000-b7ed6000 rw-p b7ab6000 00:00 0 
b7ed6000-b802e000 r-xp 00000000 08:01 2056870    /lib/tls/i686/cmov/libc-2.8.90.so
b802e000-b8030000 r--p 00158000 08:01 2056870    /lib/tls/i686/cmov/libc-2.8.90.so
b8030000-b8031000 rw-p 0015a000 08:01 2056870    /lib/tls/i686/cmov/libc-2.8.90.so
b8031000-b8034000 rw-p b8031000 00:00 0 
b8034000-b8036000 r-xp 00000000 08:01 2056873    /lib/tls/i686/cmov/libdl-2.8.90.so
b8036000-b8037000 r--p 00001000 08:01 2056873    /lib/tls/i686/cmov/libdl-2.8.90.so
b8037000-b8038000 rw-p 00002000 08:01 2056873    /lib/tls/i686/cmov/libdl-2.8.90.so
b8038000-b803c000 r-xp 00000000 08:01 1548332    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/jli/libjli.so
b803c000-b803d000 r--p 00003000 08:01 1548332    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/jli/libjli.so
b803d000-b803e000 rw-p 00004000 08:01 1548332    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/jli/libjli.so
b803e000-b8053000 r-xp 00000000 08:01 2056884    /lib/tls/i686/cmov/libpthread-2.8.90.so
b8053000-b8054000 r--p 00014000 08:01 2056884    /lib/tls/i686/cmov/libpthread-2.8.90.so
b8054000-b8055000 rw-p 00015000 08:01 2056884    /lib/tls/i686/cmov/libpthread-2.8.90.so
b8055000-b8058000 rw-p b8055000 00:00 0 
b8058000-b806c000 r-xp 00000000 08:01 188451     /usr/lib/libz.so.1.2.3.3
b806c000-b806e000 rw-p 00013000 08:01 188451     /usr/lib/libz.so.1.2.3.3
b806f000-b8071000 r-xp 00000000 08:01 1664567    /usr/lib/libXau.so.6.0.0
b8071000-b8072000 rw-p 00001000 08:01 1664567    /usr/lib/libXau.so.6.0.0
b8072000-b8079000 r-xp 00000000 08:01 2024853    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/native_threads/libhpi.so
b8079000-b807a000 r--p 00006000 08:01 2024853    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/native_threads/libhpi.so
b807a000-b807b000 rw-p 00007000 08:01 2024853    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/native_threads/libhpi.so
b807b000-b807c000 rwxp b807b000 00:00 0 
b807c000-b807d000 r--p b807c000 00:00 0 
b807d000-b807f000 rw-p b807d000 00:00 0 
b807f000-b8099000 r-xp 00000000 08:01 2039820    /lib/ld-2.8.90.so
b8099000-b809a000 r-xp b8099000 00:00 0          [vdso]
b809a000-b809b000 r--p 0001a000 08:01 2039820    /lib/ld-2.8.90.so
b809b000-b809c000 rw-p 0001b000 08:01 2039820    /lib/ld-2.8.90.so
bf886000-bf899000 rwxp bffeb000 00:00 0          [stack]
bf899000-bf89b000 rw-p bfffe000 00:00 0 

VM Arguments:
jvm_args: -Djdbc.drivers=org.postgresql.Driver -Xmx500m -Xms20m -Xverify:none -Dartemis.environment=UNIX 
java_command: uk.ac.sanger.artemis.components.ArtemisMain
Launcher Type: SUN_STANDARD

Environment Variables:
CLASSPATH=/home/evgeniy/usr/artemis/.:/home/evgeniy/usr/artemis/./lib/biojava.jar:/home/evgeniy/usr/artemis/./lib/jemAlign.jar:/home/evgeniy/usr/artemis/./lib/jakarta-regexp-1.2.jar:/home/evgeniy/usr/artemis/./lib/macos.jar:/home/evgeniy/usr/artemis/./lib/postgresql-8.1-407.jdbc2ee.jar:/home/evgeniy/usr/artemis/./lib/chado-14-interface.jar::/home/evgeniy/usr/artemis/./lib/j2ssh/commons-logging.jar:/home/evgeniy/usr/artemis/./lib/j2ssh/j2ssh-core.jar:/home/evgeniy/usr/artemis/./lib/j2ssh/:/home/evgeniy/usr/artemis/./lib/ibatis/ibatis-2.3.4.726.jar:/home/evgeniy/usr/artemis/./lib/ibatis/:/home/evgeniy/usr/artemis/./lib/ibatis/log4j-1.2.14.jar:/home/evgeniy/usr/artemis/./lib/ibatis/cglib-nodep-2.2.jar:/home/evgeniy/usr/artemis/./lib/retrotranslator-runtime-1.1.0.jar
PATH=/home/evgeniy/usr/weblogo:/home/evgeniy/bin:/home/evgeniy/usr/phrap/bin:/home/evgeniy/usr/artemis:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
USERNAME=evgeniy
LD_LIBRARY_PATH=/usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client:/usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386:/usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/../lib/i386
SHELL=/bin/bash
DISPLAY=:0.0

Signal Handlers:
SIGSEGV: [libjvm.so+0x3290e0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGBUS: [libjvm.so+0x3290e0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGFPE: [libjvm.so+0x2701c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGPIPE: [libjvm.so+0x2701c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGXFSZ: [libjvm.so+0x2701c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGILL: [libjvm.so+0x2701c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGUSR1: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGUSR2: [libjvm.so+0x26fb70], sa_mask[0]=0x00000000, sa_flags=0x10000004
SIGHUP: [libjvm.so+0x271d00], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGINT: [libjvm.so+0x271d00], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGTERM: [libjvm.so+0x271d00], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGQUIT: [libjvm.so+0x271d00], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004


---------------  S Y S T E M  ---------------

OS:Ubuntu 8.10 (intrepid)
uname:Linux 2.6.27-14-generic #1 SMP Fri Jul 24 22:19:33 UTC 2009 i686
libc:glibc 2.8.90 NPTL 2.8.90 
rlimit: STACK 8192k, CORE 0k, NPROC 4093, NOFILE 1024, AS infinity
load average:0.28 0.30 0.25

CPU:total 1 (1 cores per cpu, 1 threads per core) family 6 model 13
stepping 6, cmov, cx8, fxsr, mmx, sse, sse2

Memory: 4k page, physical 514008k(29008k free), swap 1510068k(1474804k
free)

vm_info: OpenJDK Client VM (1.6.0_0-b12) for linux-x86 JRE
(1.6.0_0-b12), built on Aug  8 2009 20:39:07 by "buildd" with gcc 4.3.2

time: Wed Aug 12 10:49:02 2009
elapsed time: 2 seconds

** Affects: openjdk-6 (Ubuntu)
     Importance: Undecided
         Status: New

-- 
Artemis crashes at starup
https://bugs.launchpad.net/bugs/412562
You received this bug notification because you are a member of OpenJDK,
which is subscribed to openjdk-6 in ubuntu.

Status in “openjdk-6” package in Ubuntu: New

Bug description:
---------------  T H R E A D  ---------------

Current thread (0x08d1c000):  JavaThread "main" [_thread_in_vm, id=30777, stack(0xb76a3000,0xb76f4000)]

siginfo:si_signo=SIGSEGV: si_errno=0, si_code=1 (SEGV_MAPERR), si_addr=0x00000000

Registers:
EAX=0x00000000, EBX=0xb7aa9ff4, ECX=0x08d1cb14, EDX=0x08d1a988
ESP=0xb76f2644, EBP=0xb76f26a8, ESI=0x08d1c000, EDI=0x93e70978
EIP=0xb78ce35d, CR2=0x00000000, EFLAGS=0x00010296

Top of Stack: (sp=0xb76f2644)
0xb76f2644:   00000001 08d1c000 00000000 08d1cb0c
0xb76f2654:   08d1cb10 006f26a8 b78c5d93 00000000
0xb76f2664:   00000000 08d1cb0c 08d1c000 000003a4
0xb76f2674:   08d1c000 08d1cb08 00000667 b7a795d4
0xb76f2684:   08d1cb18 08d1c000 08d1cb08 0000017b
0xb76f2694:   b7a76e08 08d1c000 b4dd1758 b4dcc193
0xb76f26a4:   b4dcbf4d b76f26d8 b4daeca8 08d1c0f4
0xb76f26b4:   00000000 b4dcc263 b4dcd35a 94231350 

Instructions: (pc=0xb78ce35d)
0xb78ce34d:   45 ac 85 c0 0f 84 81 01 00 00 8b 45 0c 83 ec 0c
0xb78ce35d:   8b 38 57 e8 0b 0c fe ff 83 c4 10 89 c7 85 c0 0f 

Stack: [0xb76a3000,0xb76f4000],  sp=0xb76f2644,  free space=317k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
V  [libjvm.so+0x1b435d]
C  [libmawt.so+0xeca8]  Java_java_awt_Component_initIDs+0x2f8
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::StubRoutines (1)
V  [libjvm.so+0x194c27]
V  [libjvm.so+0x26db89]
V  [libjvm.so+0x193eff]
V  [libjvm.so+0x16fd86]
V  [libjvm.so+0x16fdf1]
V  [libjvm.so+0x170d35]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x171036]
V  [libjvm.so+0x171268]
V  [libjvm.so+0x1d5ba1]
V  [libjvm.so+0x1a7ee8]
C  [java+0x2437]
C  [java+0x3058]  JavaMain+0xbc8
C  [libpthread.so.0+0x650f]

Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::StubRoutines (1)

---------------  P R O C E S S  ---------------

Java Threads: ( => current thread )
  0x08d63000 JavaThread "Low Memory Detector" daemon [_thread_blocked, id=30783, stack(0xb4f0d000,0xb4f5e000)]
  0x08d58400 JavaThread "CompilerThread0" daemon [_thread_blocked, id=30782, stack(0xb4f5e000,0xb4fdf000)]
  0x08d57000 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=30781, stack(0xb4fdf000,0xb5030000)]
  0x08d51000 JavaThread "Finalizer" daemon [_thread_blocked, id=30780, stack(0xb5076000,0xb50c7000)]
  0x08d4cc00 JavaThread "Reference Handler" daemon [_thread_blocked, id=30779, stack(0xb50c7000,0xb5118000)]
=>0x08d1c000 JavaThread "main" [_thread_in_vm, id=30777, stack(0xb76a3000,0xb76f4000)]

Other Threads:
  0x08d4b400 VMThread [stack: 0xb5118000,0xb5199000] [id=30778]
  0x08d64800 WatcherThread [stack: 0xb4e8c000,0xb4f0d000] [id=30784]

VM state:not at safepoint (normal execution)

VM Mutex/Monitor currently owned by a thread: None

Heap
 def new generation   total 1408K, used 364K [0x70550000, 0x706d0000, 0x72bc0000)
  eden space 1280K,  28% used [0x70550000, 0x705ab318, 0x70690000)
  from space 128K,   0% used [0x70690000, 0x70690000, 0x706b0000)
  to   space 128K,   0% used [0x706b0000, 0x706b0000, 0x706d0000)
 tenured generation   total 18944K, used 0K [0x72bc0000, 0x73e40000, 0x8f950000)
   the space 18944K,   0% used [0x72bc0000, 0x72bc0000, 0x72bc0200, 0x73e40000)
 compacting perm gen  total 12288K, used 78K [0x8f950000, 0x90550000, 0x93950000)
   the space 12288K,   0% used [0x8f950000, 0x8f963ba8, 0x8f963c00, 0x90550000)
    ro space 8192K,  89% used [0x93950000, 0x9407cd88, 0x9407ce00, 0x94150000)
    rw space 12288K,  59% used [0x94150000, 0x94879538, 0x94879600, 0x94d50000)

Dynamic libraries:
08048000-08051000 r-xp 00000000 08:01 2024866    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/bin/java
08051000-08052000 r--p 00008000 08:01 2024866    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/bin/java
08052000-08053000 rw-p 00009000 08:01 2024866    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/bin/java
08d15000-08e0d000 rw-p 08d15000 00:00 0          [heap]
70550000-706d0000 rwxp 70550000 00:00 0 
706d0000-72bc0000 rwxp 706d0000 00:00 0 
72bc0000-73e40000 rwxp 72bc0000 00:00 0 
73e40000-8f950000 rwxp 73e40000 00:00 0 
8f950000-90550000 rwxp 8f950000 00:00 0 
90550000-93950000 rwxp 90550000 00:00 0 
93950000-9407d000 r--s 00001000 08:01 2024812    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/classes.jsa
9407d000-94150000 rwxp 9407d000 00:00 0 
94150000-9487a000 rw-p 0072e000 08:01 2024812    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/classes.jsa
9487a000-94d50000 rwxp 9487a000 00:00 0 
94d50000-94e47000 rw-p 00e58000 08:01 2024812    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/classes.jsa
94e47000-95150000 rwxp 94e47000 00:00 0 
95150000-95154000 r-xs 00f4f000 08:01 2024812    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/classes.jsa
95154000-95550000 rwxp 95154000 00:00 0 
b4b95000-b4b99000 r-xp 00000000 08:01 1664578    /usr/lib/libXdmcp.so.6.0.0
b4b99000-b4b9a000 rw-p 00003000 08:01 1664578    /usr/lib/libXdmcp.so.6.0.0
b4b9a000-b4bb1000 r-xp 00000000 08:01 188439     /usr/lib/libxcb.so.1.0.0
b4bb1000-b4bb2000 r--p 00016000 08:01 188439     /usr/lib/libxcb.so.1.0.0
b4bb2000-b4bb3000 rw-p 00017000 08:01 188439     /usr/lib/libxcb.so.1.0.0
b4bb3000-b4bb4000 r-xp 00000000 08:01 188437     /usr/lib/libxcb-xlib.so.0.0.0
b4bb4000-b4bb5000 r--p 00000000 08:01 188437     /usr/lib/libxcb-xlib.so.0.0.0
b4bb5000-b4bb6000 rw-p 00001000 08:01 188437     /usr/lib/libxcb-xlib.so.0.0.0
b4bb6000-b4ca1000 r-xp 00000000 08:01 1663749    /usr/lib/libX11.so.6.2.0
b4ca1000-b4ca2000 r--p 000ea000 08:01 1663749    /usr/lib/libX11.so.6.2.0
b4ca2000-b4ca4000 rw-p 000eb000 08:01 1663749    /usr/lib/libX11.so.6.2.0
b4ca4000-b4ca5000 rw-p b4ca4000 00:00 0 
b4ca5000-b4cb2000 r-xp 00000000 08:01 1664582    /usr/lib/libXext.so.6.4.0
b4cb2000-b4cb4000 rw-p 0000c000 08:01 1664582    /usr/lib/libXext.so.6.4.0
b4cc3000-b4d9e000 r-xp 00000000 08:01 2024844    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libmlib_image.so
b4d9e000-b4d9f000 r--p 000da000 08:01 2024844    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libmlib_image.so
b4d9f000-b4da0000 rw-p 000db000 08:01 2024844    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libmlib_image.so
b4da0000-b4dcf000 r-xp 00000000 08:01 2031626    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so
b4dcf000-b4dd2000 rw-p 0002e000 08:01 2031626    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so
b4dd2000-b4dd3000 rw-p b4dd2000 00:00 0 
b4dd3000-b4e57000 r-xp 00000000 08:01 2024813    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libawt.so
b4e57000-b4e58000 r--p 00083000 08:01 2024813    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libawt.so
b4e58000-b4e5e000 rw-p 00084000 08:01 2024813    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libawt.so
b4e5e000-b4e83000 rw-p b4e5e000 00:00 0 
b4e83000-b4e8c000 r--s 00065000 08:01 1729404    /usr/share/java/gnome-java-bridge.jar
b4e8c000-b4e8d000 ---p b4e8c000 00:00 0 
b4e8d000-b4f0d000 rwxp b4e8d000 00:00 0 
b4f0d000-b4f10000 ---p b4f0d000 00:00 0 
b4f10000-b4f5e000 rwxp b4f10000 00:00 0 
b4f5e000-b4f61000 ---p b4f5e000 00:00 0 
b4f61000-b4fdf000 rwxp b4f61000 00:00 0 
b4fdf000-b4fe2000 ---p b4fdf000 00:00 0 
b4fe2000-b5030000 rwxp b4fe2000 00:00 0 
b5030000-b5037000 r--s 00000000 08:01 1672194    /usr/lib/gconv/gconv-modules.cache
b5037000-b5076000 r--p 00000000 08:01 1688067    /usr/lib/locale/en_US.utf8/LC_CTYPE
b5076000-b5079000 ---p b5076000 00:00 0 
b5079000-b50c7000 rwxp b5079000 00:00 0 
b50c7000-b50ca000 ---p b50c7000 00:00 0 
b50ca000-b5118000 rwxp b50ca000 00:00 0 
b5118000-b5119000 ---p b5118000 00:00 0 
b5119000-b5199000 rwxp b5119000 00:00 0 
b5199000-b51cc000 rw-p b5199000 00:00 0 
b51cc000-b535f000 r--s 038b4000 08:01 2024796    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/rt.jar
b535f000-b536d000 rwxp b535f000 00:00 0 
b536d000-b5387000 rwxp b536d000 00:00 0 
b5387000-b5391000 rwxp b5387000 00:00 0 
b5391000-b546e000 rwxp b5391000 00:00 0 
b546e000-b546f000 rwxp b546e000 00:00 0 
b546f000-b5481000 rwxp b546f000 00:00 0 
b5481000-b548b000 rwxp b5481000 00:00 0 
b548b000-b5568000 rwxp b548b000 00:00 0 
b5568000-b556e000 rwxp b5568000 00:00 0 
b556e000-b5588000 rwxp b556e000 00:00 0 
b5588000-b5595000 rwxp b5588000 00:00 0 
b5595000-b5613000 rwxp b5595000 00:00 0 
b5613000-b5693000 rwxp b5613000 00:00 0 
b5693000-b7613000 rwxp b5693000 00:00 0 
b7613000-b761a000 r-xp 00000000 08:01 2024852    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libzip.so
b761a000-b761b000 r--p 00006000 08:01 2024852    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libzip.so
b761b000-b761c000 rw-p 00007000 08:01 2024852    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libzip.so
b761c000-b7640000 r-xp 00000000 08:01 2024835    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libjava.so
b7640000-b7641000 r--p 00023000 08:01 2024835    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libjava.so
b7641000-b7643000 rw-p 00024000 08:01 2024835    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libjava.so
b7643000-b764f000 r-xp 00000000 08:01 2024851    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libverify.so
b764f000-b7650000 ---p 0000c000 08:01 2024851    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libverify.so
b7650000-b7651000 r--p 0000c000 08:01 2024851    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libverify.so
b7651000-b7652000 rw-p 0000d000 08:01 2024851    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libverify.so
b7652000-b765c000 r-xp 00000000 08:01 2056879    /lib/tls/i686/cmov/libnss_files-2.8.90.so
b765c000-b765d000 r--p 00009000 08:01 2056879    /lib/tls/i686/cmov/libnss_files-2.8.90.so
b765d000-b765e000 rw-p 0000a000 08:01 2056879    /lib/tls/i686/cmov/libnss_files-2.8.90.so
b765e000-b7667000 r-xp 00000000 08:01 2056881    /lib/tls/i686/cmov/libnss_nis-2.8.90.so
b7667000-b7668000 r--p 00008000 08:01 2056881    /lib/tls/i686/cmov/libnss_nis-2.8.90.so
b7668000-b7669000 rw-p 00009000 08:01 2056881    /lib/tls/i686/cmov/libnss_nis-2.8.90.so
b7669000-b7670000 r-xp 00000000 08:01 2056877    /lib/tls/i686/cmov/libnss_compat-2.8.90.so
b7670000-b7671000 r--p 00006000 08:01 2056877    /lib/tls/i686/cmov/libnss_compat-2.8.90.so
b7671000-b7672000 rw-p 00007000 08:01 2056877    /lib/tls/i686/cmov/libnss_compat-2.8.90.so
b7672000-b7687000 r-xp 00000000 08:01 2056876    /lib/tls/i686/cmov/libnsl-2.8.90.so
b7687000-b7688000 r--p 00014000 08:01 2056876    /lib/tls/i686/cmov/libnsl-2.8.90.so
b7688000-b7689000 rw-p 00015000 08:01 2056876    /lib/tls/i686/cmov/libnsl-2.8.90.so
b7689000-b768b000 rw-p b7689000 00:00 0 
b768d000-b7692000 rwxp b768d000 00:00 0 
b7692000-b769a000 rw-s 00000000 08:01 1745371    /tmp/hsperfdata_evgeniy/30776
b769a000-b76a1000 r-xp 00000000 08:01 2056886    /lib/tls/i686/cmov/librt-2.8.90.so
b76a1000-b76a2000 r--p 00007000 08:01 2056886    /lib/tls/i686/cmov/librt-2.8.90.so
b76a2000-b76a3000 rw-p 00008000 08:01 2056886    /lib/tls/i686/cmov/librt-2.8.90.so
b76a3000-b76a6000 ---p b76a3000 00:00 0 
b76a6000-b76f4000 rwxp b76a6000 00:00 0 
b76f4000-b7718000 r-xp 00000000 08:01 2056874    /lib/tls/i686/cmov/libm-2.8.90.so
b7718000-b7719000 r--p 00023000 08:01 2056874    /lib/tls/i686/cmov/libm-2.8.90.so
b7719000-b771a000 rw-p 00024000 08:01 2056874    /lib/tls/i686/cmov/libm-2.8.90.so
b771a000-b7a97000 r-xp 00000000 08:01 2024797    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/libjvm.so
b7a97000-b7aaa000 r--p 0037d000 08:01 2024797    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/libjvm.so
b7aaa000-b7ab6000 rw-p 00390000 08:01 2024797    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client/libjvm.so
b7ab6000-b7ed6000 rw-p b7ab6000 00:00 0 
b7ed6000-b802e000 r-xp 00000000 08:01 2056870    /lib/tls/i686/cmov/libc-2.8.90.so
b802e000-b8030000 r--p 00158000 08:01 2056870    /lib/tls/i686/cmov/libc-2.8.90.so
b8030000-b8031000 rw-p 0015a000 08:01 2056870    /lib/tls/i686/cmov/libc-2.8.90.so
b8031000-b8034000 rw-p b8031000 00:00 0 
b8034000-b8036000 r-xp 00000000 08:01 2056873    /lib/tls/i686/cmov/libdl-2.8.90.so
b8036000-b8037000 r--p 00001000 08:01 2056873    /lib/tls/i686/cmov/libdl-2.8.90.so
b8037000-b8038000 rw-p 00002000 08:01 2056873    /lib/tls/i686/cmov/libdl-2.8.90.so
b8038000-b803c000 r-xp 00000000 08:01 1548332    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/jli/libjli.so
b803c000-b803d000 r--p 00003000 08:01 1548332    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/jli/libjli.so
b803d000-b803e000 rw-p 00004000 08:01 1548332    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/jli/libjli.so
b803e000-b8053000 r-xp 00000000 08:01 2056884    /lib/tls/i686/cmov/libpthread-2.8.90.so
b8053000-b8054000 r--p 00014000 08:01 2056884    /lib/tls/i686/cmov/libpthread-2.8.90.so
b8054000-b8055000 rw-p 00015000 08:01 2056884    /lib/tls/i686/cmov/libpthread-2.8.90.so
b8055000-b8058000 rw-p b8055000 00:00 0 
b8058000-b806c000 r-xp 00000000 08:01 188451     /usr/lib/libz.so.1.2.3.3
b806c000-b806e000 rw-p 00013000 08:01 188451     /usr/lib/libz.so.1.2.3.3
b806f000-b8071000 r-xp 00000000 08:01 1664567    /usr/lib/libXau.so.6.0.0
b8071000-b8072000 rw-p 00001000 08:01 1664567    /usr/lib/libXau.so.6.0.0
b8072000-b8079000 r-xp 00000000 08:01 2024853    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/native_threads/libhpi.so
b8079000-b807a000 r--p 00006000 08:01 2024853    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/native_threads/libhpi.so
b807a000-b807b000 rw-p 00007000 08:01 2024853    /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/native_threads/libhpi.so
b807b000-b807c000 rwxp b807b000 00:00 0 
b807c000-b807d000 r--p b807c000 00:00 0 
b807d000-b807f000 rw-p b807d000 00:00 0 
b807f000-b8099000 r-xp 00000000 08:01 2039820    /lib/ld-2.8.90.so
b8099000-b809a000 r-xp b8099000 00:00 0          [vdso]
b809a000-b809b000 r--p 0001a000 08:01 2039820    /lib/ld-2.8.90.so
b809b000-b809c000 rw-p 0001b000 08:01 2039820    /lib/ld-2.8.90.so
bf886000-bf899000 rwxp bffeb000 00:00 0          [stack]
bf899000-bf89b000 rw-p bfffe000 00:00 0 

VM Arguments:
jvm_args: -Djdbc.drivers=org.postgresql.Driver -Xmx500m -Xms20m -Xverify:none -Dartemis.environment=UNIX 
java_command: uk.ac.sanger.artemis.components.ArtemisMain
Launcher Type: SUN_STANDARD

Environment Variables:
CLASSPATH=/home/evgeniy/usr/artemis/.:/home/evgeniy/usr/artemis/./lib/biojava.jar:/home/evgeniy/usr/artemis/./lib/jemAlign.jar:/home/evgeniy/usr/artemis/./lib/jakarta-regexp-1.2.jar:/home/evgeniy/usr/artemis/./lib/macos.jar:/home/evgeniy/usr/artemis/./lib/postgresql-8.1-407.jdbc2ee.jar:/home/evgeniy/usr/artemis/./lib/chado-14-interface.jar::/home/evgeniy/usr/artemis/./lib/j2ssh/commons-logging.jar:/home/evgeniy/usr/artemis/./lib/j2ssh/j2ssh-core.jar:/home/evgeniy/usr/artemis/./lib/j2ssh/:/home/evgeniy/usr/artemis/./lib/ibatis/ibatis-2.3.4.726.jar:/home/evgeniy/usr/artemis/./lib/ibatis/:/home/evgeniy/usr/artemis/./lib/ibatis/log4j-1.2.14.jar:/home/evgeniy/usr/artemis/./lib/ibatis/cglib-nodep-2.2.jar:/home/evgeniy/usr/artemis/./lib/retrotranslator-runtime-1.1.0.jar
PATH=/home/evgeniy/usr/weblogo:/home/evgeniy/bin:/home/evgeniy/usr/phrap/bin:/home/evgeniy/usr/artemis:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
USERNAME=evgeniy
LD_LIBRARY_PATH=/usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/client:/usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386:/usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/../lib/i386
SHELL=/bin/bash
DISPLAY=:0.0

Signal Handlers:
SIGSEGV: [libjvm.so+0x3290e0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGBUS: [libjvm.so+0x3290e0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGFPE: [libjvm.so+0x2701c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGPIPE: [libjvm.so+0x2701c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGXFSZ: [libjvm.so+0x2701c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGILL: [libjvm.so+0x2701c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGUSR1: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGUSR2: [libjvm.so+0x26fb70], sa_mask[0]=0x00000000, sa_flags=0x10000004
SIGHUP: [libjvm.so+0x271d00], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGINT: [libjvm.so+0x271d00], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGTERM: [libjvm.so+0x271d00], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGQUIT: [libjvm.so+0x271d00], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004


---------------  S Y S T E M  ---------------

OS:Ubuntu 8.10 (intrepid)
uname:Linux 2.6.27-14-generic #1 SMP Fri Jul 24 22:19:33 UTC 2009 i686
libc:glibc 2.8.90 NPTL 2.8.90 
rlimit: STACK 8192k, CORE 0k, NPROC 4093, NOFILE 1024, AS infinity
load average:0.28 0.30 0.25

CPU:total 1 (1 cores per cpu, 1 threads per core) family 6 model 13 stepping 6, cmov, cx8, fxsr, mmx, sse, sse2

Memory: 4k page, physical 514008k(29008k free), swap 1510068k(1474804k free)

vm_info: OpenJDK Client VM (1.6.0_0-b12) for linux-x86 JRE (1.6.0_0-b12), built on Aug  8 2009 20:39:07 by "buildd" with gcc 4.3.2

time: Wed Aug 12 10:49:02 2009
elapsed time: 2 seconds



Follow ups

References