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[Joel Epstein <joel9001@xxxxxxxxxxx>]

Hello,
I am observing a failure in my runall.pl script in which mysqld is failing to start due to an Environment Failure.  What I don't understand is why a mysqld option that has been generated by a combinations file would prevent a mysqld from starting.  Here is an excerpt from the bootstrap log:
data/mysql1/mysql-5.6.14-tokudb-ps-2-linux-x86_64/bin/mysqld --no-defaults --bootstrap --basedir=/data/mysql1/mysql-5.6.14-tokudb-ps-2-linux-x86_64 --datadir=/data/mysql1/431415/cmdrun_1/master-data --loose-skip-ndbcluster --tmpdir=. --core-file --lc-messages-dir=/data/mysql1/mysql-5.6.14-tokudb-ps-2-linux-x86_64/share --character-sets-dir=/data/mysql1/mysql-5.6.14-tokudb-ps-2-linux-x86_64/share/charsets --innodb_change_buffering=all --innodb_log_arch_dir=/data/mysql1//431415/_epoch/1382952224386723860 --innodb_log_archive=1 --innodb_log_block_size=4096 --innodb_log_buffer_size=1048577 --innodb_log_file_size=10485761 --innodb_log_files_in_group=10 --innodb_max_bitmap_file_size=20480 --innodb_track_changed_pages=0 --innodb_adaptive_hash_index_partitions=5 --innodb_buffer_pool_instances=42013-10-31 10:59:43 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).2013-10-31 10:59:43 14420 [Note] Plugin 'FEDERATED' is disabled.2013-10-31 10:59:43 14420 [Note] InnoDB: The InnoDB memory heap is disabled2013-10-31 10:59:43 14420 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins2013-10-31 10:59:43 14420 [Note] InnoDB: Compressed tables use zlib 1.2.32013-10-31 10:59:43 14420 [Note] InnoDB: Using Linux native AIO2013-10-31 10:59:43 14420 [Note] InnoDB: Using CPU crc32 instructions2013-10-31 10:59:43 14420 [Note] InnoDB: Initializing buffer pool, size = 128.0M2013-10-31 10:59:43 14420 [Note] InnoDB: Completed initialization of buffer pool2013-10-31 10:59:43 14420 [Note] InnoDB: The first specified data file ./ibdata1 did not exist: a new database to be created!2013-10-31 10:59:43 14420 [Note] InnoDB: Setting file ./ibdata1 size to 12 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Database physically writes the file full: wait...2013-10-31 10:59:43 14420 [Note] InnoDB: Setting log file ./ib_logfile101 size to 10 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Setting log file ./ib_logfile1 size to 10 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Setting log file ./ib_logfile2 size to 10 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Setting log file ./ib_logfile3 size to 10 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Setting log file ./ib_logfile4 size to 10 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Setting log file ./ib_logfile5 size to 10 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Setting log file ./ib_logfile6 size to 10 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Setting log file ./ib_logfile7 size to 10 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Setting log file ./ib_logfile8 size to 10 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Setting log file ./ib_logfile9 size to 10 MB2013-10-31 10:59:43 14420 [Note] InnoDB: Renaming log file ./ib_logfile101 to ./ib_logfile02013-10-31 10:59:43 14420 [Warning] InnoDB: New log files created, LSN=457812013-10-31 10:59:43 14420 [Note] InnoDB: Doublewrite buffer not found: creating new2013-10-31 10:59:43 14420 [Note] InnoDB: Doublewrite buffer created2013-10-31 10:59:43 14420 [Note] InnoDB: 128 rollback segment(s) are active.2013-10-31 10:59:43 14420 [Warning] InnoDB: Creating foreign key constraint system tables.2013-10-31 10:59:43 14420 [Note] InnoDB: Foreign key constraint system tables created2013-10-31 10:59:43 14420 [Note] InnoDB: Creating tablespace and datafile system tables.2013-10-31 10:59:43 14420 [Note] InnoDB: Tablespace and datafile system tables created.2013-10-31 10:59:43 14420 [Note] InnoDB: Waiting for purge to start2013-10-31 10:59:43 14420 [Note] InnoDB: 5.6.14 started; log sequence number 02013-10-31 10:59:43 14420 [Warning] /data/mysql1/mysql-5.6.14-tokudb-ps-2-linux-x86_64/bin/mysqld: unknown option '--loose-skip-ndbcluster'2013-10-31 10:59:43 14420 [ERROR] /data/mysql1/mysql-5.6.14-tokudb-ps-2-linux-x86_64/bin/mysqld: unknown variable 'innodb_log_arch_dir=/data/mysql1//431415/_epoch/1382952224386723860'2013-10-31 10:59:43 14420 [ERROR] Aborting
Thanks in advance for any suggestions regarding my environment (I have reconfirmed all the RQG Prerequisites on this system).