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Re: [Question #692095]: HPC error

 

Question #692095 on Yade changed:
https://answers.launchpad.net/yade/+question/692095

    Status: Open => Answered

Robert Caulk proposed the following answer:
Try adding the flag -DENABLE_USEFUL_WARNINGS=off

Le mar. 28 juil. 2020 à 00:35, mrhappy <question692095@xxxxxxxxxxxxxxxxxxxxx>
a écrit :

> New question #692095 on Yade:
> https://answers.launchpad.net/yade/+question/692095
>
> The people at the Advanced Research Computing center at my University are
> trying to help me install YADE on the HPC. The following is message that I
> received from them. Can anyone help them address this issue? Thank you so
> much!
>
>
>
> I configure using the following and that does get me a build environment
>
> cmake -DPYTHON_VERSION=3.7.6 -DENABLE_VTK=off -DUSE_QT5=off
> -DENABLE_GUI=off -DENABLE_GTS=off -DENABLE_CGAL=off -DENABLE_PFVFLOW=off
> -DCMAKE_INSTALL_PREFIX=../install ../trunk
>
> But when running make it gets to 92% then fails with a numpy error.
>
> I will continue to work with this. Also if you have any other
> suggegestions that would be great.
>
>
> [ 92%] Building CXX object py/CMakeFiles/_utils.dir/_utils.cpp.o
> In file included from
> /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
> from
> /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
> from
> /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
> from /scratch/st-apeirce-1/myYade/trunk/py/_utils.cpp:8:
> /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
> warning: #warning "Using deprecated NumPy API, disable it with " "#define
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
> #warning "Using deprecated NumPy API, disable it with " \
> ^
> In file included from
> /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/boost-1.73.0-uc6u5oumzasbqciah7s3kcrdyvomakyk/include/boost/python/exception_translator.hpp:10:0,
> from
> /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/boost-1.73.0-uc6u5oumzasbqciah7s3kcrdyvomakyk/include/boost/python.hpp:28,
> from /scratch/st-apeirce-1/myYade/trunk/lib/base/Math.hpp:25,
> from
> /scratch/st-apeirce-1/myYade/trunk/lib/computational-geometry/Hull2d.hpp:3,
> from /scratch/st-apeirce-1/myYade/trunk/py/_utils.hpp:4,
> from /scratch/st-apeirce-1/myYade/trunk/py/_utils.cpp:1:
> /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/boost-1.73.0-uc6u5oumzasbqciah7s3kcrdyvomakyk/include/boost/bind.hpp:41:273:
> note: #pragma message: The practice of declaring the Bind placeholders (_1,
> _2, ...) in the global namespace is deprecated. Please use
> <boost/bind/bind.hpp> + using namespace boost::placeholders, or define
> BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.
> In file included from
> /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:21:0,
> from
> /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
> from /scratch/st-apeirce-1/myYade/trunk/py/_utils.cpp:8:
> /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1:
> error: 'int _import_array()' defined but not used [-Werror=unused-function]
> _import_array(void)
> ^
> cc1plus: all warnings being treated as errors
> make[2]: *** [py/CMakeFiles/_utils.dir/_utils.cpp.o] Error 1
> make[1]: *** [py/CMakeFiles/_utils.dir/all] Error 2
> make: *** [all] Error 2
> [anajmul@login03 build]$
>
>
> Thank you!
>
>
>
>
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