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[Namzu <question703685@xxxxxxxxxxxxxxxxxxxxx>]

Question #703685 on Yade changed:
https://answers.launchpad.net/yade/+question/703685

    Status: Needs information => Open

Namzu gave more information on the question:
>what Yade are you using?
System package? self-compiled?

I installed it using sudo apt-get install yade.

>Which version?
Yade 2020.01a

python version 3.8.10
matplotlib version 3.6.0

> If referring to code, always write/paste code exactly used. Here
assuming it should have been plot.plot()?

Sorry for the confusion. I meant plot.plot() only.

>please give at least one specific example.

I tried to run this code But I am getting "Attribute error:
PathCollection.set() got an unexpected keyword argument 'verts'  "which
is related to matplotlib.  plots are not shown. What i Guess is
matplotlib version in my system and yade version is not matching. If
yes, can you suggest which version I should use.

# gravity deposition in box, showing how to plot and save history of data,
# and how to control the simulation while it is running by calling
# python functions from within the simulation loop

# import yade modules that we will use below
from yade import pack, plot

# create rectangular box from facets
O.bodies.append(geom.facetBox((.5, .5, .5), (.5, .5, .5), wallMask=31))

# create empty sphere packing
# sphere packing is not equivalent to particles in simulation, it contains only the pure geometry
sp = pack.SpherePack()
# generate randomly spheres with uniform radius distribution
sp.makeCloud((0, 0, 0), (1, 1, 1), rMean=.05, rRelFuzz=.5)
# add the sphere pack to the simulation
sp.toSimulation()

O.engines = [
        ForceResetter(),
        InsertionSortCollider([Bo1_Sphere_Aabb(), Bo1_Facet_Aabb()]),
        InteractionLoop(
                # handle sphere+sphere and facet+sphere collisions
                [Ig2_Sphere_Sphere_ScGeom(), Ig2_Facet_Sphere_ScGeom()],
                [Ip2_FrictMat_FrictMat_FrictPhys()],
                [Law2_ScGeom_FrictPhys_CundallStrack()]
        ),
        NewtonIntegrator(gravity=(0, 0, -9.81), damping=0.4),
        # call the checkUnbalanced function (defined below) every 2 seconds
        PyRunner(command='checkUnbalanced()', realPeriod=2),
        # call the addPlotData function every 200 steps
        PyRunner(command='addPlotData()', iterPeriod=100)
]
O.dt = .5 * PWaveTimeStep()

# enable energy tracking; any simulation parts supporting it
# can create and update arbitrary energy types, which can be
# accessed as O.energy['energyName'] subsequently
O.trackEnergy = True


# if the unbalanced forces goes below .05, the packing
# is considered stabilized, therefore we stop collected
# data history and stop
def checkUnbalanced():
	if unbalancedForce() < .05:
		O.pause()
		plot.saveDataTxt('bbb.txt.bz2')
		# plot.saveGnuplot('bbb') is also possible


# collect history of data which will be plotted
def addPlotData():
	# each item is given a names, by which it can be the unsed in plot.plots
	# the **O.energy converts dictionary-like O.energy to plot.addData arguments
	plot.addData(i=O.iter, unbalanced=unbalancedForce(), **O.energy)


# define how to plot data: 'i' (step number) on the x-axis, unbalanced force
# on the left y-axis, all energies on the right y-axis
# (O.energy.keys is function which will be called to get all defined energies)
# None separates left and right y-axis
plot.plots = {'i': ('unbalanced', None, O.energy.keys)}

# show the plot on the screen, and update while the simulation runs
plot.plot()

O.saveTmp()

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