dhis2-devs team mailing list archive
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dhis2-devs team
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Mailing list archive
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Message #51578
Re: latest 2.28 build not working?
It might be. Possibly this is a consequence of moving backwards and
forwards again between versions. why don't you try to "delete from
trackedentity where name='Person'" and try again?
(I am assuming you have made backup of your database)
On 1 August 2018 at 15:00, Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx>
wrote:
> Thank you Bob and Jason,
>
> Do you think that the bellow section of the log is the problem:?
>
>
>
> * INFO 2018-08-01 16:56:01,629 Executing startup routine [8 of 15,
> runlevel 7]: TrackedEntityTableAlteror (DefaultStartupRoutineExecutor.java
> [localhost-startStop-1])
>
> * ERROR 2018-08-01 16:56:02,498 org.springframework.dao.DuplicateKeyException:
> StatementCallback; SQL [INSERT INTO trackedentity(trackedentityid,uid,
> code, created, lastupdated,name, description) values(nextval('hibernate_
> sequence'),'MCPQUTHX1Ze','Person','2018-08-01','2018-08-01','Person','Person')];
> ERROR: duplicate key value violates unique constraint
> "uk_b0aojuanxabfuylrbc2k6xk20"
>
> Detail: Key (name)=(Person) already exists.; nested exception is
> org.postgresql.util.PSQLException: ERROR: duplicate key value violates
> unique constraint "uk_b0aojuanxabfuylrbc2k6xk20"
>
> Detail: Key (name)=(Person) already exists.
>
>
>
> Because after this line all the remaining doesn’t work.
>
>
>
> Let me know.
>
>
>
> All the best,
>
> Bernard
>
>
>
> [image: cid:image002.png@01D36F50.572585A0]
>
> *Bernard Sadaka*
>
> *Information Management Advisor*
>
> Première Urgence - Aide Médicale Internationale
>
> Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
>
> Ain el Remmaneh, Beirut, Lebanon
>
> *E-mail:* lib.ima@xxxxxxxxxx
>
> *Cell:* +961 71 004 881 (208)
>
> *Skype:* imapuami
>
> *Website:* https://www.pu-ami.org
>
>
>
>
>
> *From:* Bob Jolliffe [mailto:bobjolliffe@xxxxxxxxx]
> *Sent:* Wednesday, August 1, 2018 03:32 PM
> *To:* lib.ima@xxxxxxxxxx
> *Cc:* Jason Pickering <jason.p.pickering@xxxxxxxxx>; dhis2-devs <
> dhis2-devs@xxxxxxxxxxxxxxxxxxx>
> *Subject:* Re: [Dhis2-devs] latest 2.28 build not working?
>
>
>
> OK sorry I was misreading something I read earlier in your log file (which
> was actually saying there was no such file ROOT.war rather than a bad war).
>
>
>
> But after that you seem to have placed the war into correct position and
> started successfully. It says it has deployed though it is odd that there
> is no sign in the logs of the usual startup messages. I am afraid I have
> no explanation for that.
>
>
>
>
>
> On 1 August 2018 at 13:21, Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx>
> wrote:
>
> Dear Bob,
>
> Apparently the unzip command returns: No errors detected in compressed
> data of ROOT.war (and attached the output).
>
> Please advise.
>
>
>
> All the best,
>
> Bernard
>
>
>
> [image: cid:image002.png@01D36F50.572585A0]
>
> *Bernard Sadaka*
>
> *Information Management Advisor*
>
> Première Urgence - Aide Médicale Internationale
>
> Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
>
> Ain el Remmaneh, Beirut, Lebanon
>
> *E-mail:* lib.ima@xxxxxxxxxx
>
> *Cell:* +961 71 004 881 (208)
>
> *Skype:* imapuami
>
> *Website:* https://www.pu-ami.org
>
>
>
>
>
> *From:* Bob Jolliffe [mailto:bobjolliffe@xxxxxxxxx]
> *Sent:* Wednesday, August 1, 2018 03:08 PM
> *To:* lib.ima@xxxxxxxxxx
> *Cc:* Jason Pickering <jason.p.pickering@xxxxxxxxx>; dhis2-devs <
> dhis2-devs@xxxxxxxxxxxxxxxxxxx>
> *Subject:* Re: [Dhis2-devs] latest 2.28 build not working?
>
>
>
> Hi Bernard
>
>
>
> Your war file is damaged ie. it is not a proper zip file. Probably
> interrupted during download. You need to clear everything out of your
> webapps directory, download and deploy it again.
>
>
>
> You can always test if your war file is "good" by running "unzip -t
> mywarfile.war"
>
>
>
> This is your current problem. Having resolved this we may of course see
> new ones, but one step at a time.
>
>
>
> Regards
>
> Bob
>
>
>
> On 1 August 2018 at 12:44, Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx>
> wrote:
>
> Dear Jason,
>
> Please find attached the full logs for today.
>
> I tried several times to load the old WAR file and then the new WAR file
> and did it multiple times.
>
> Looking forward to your support.
>
> Thank you in advance.
>
> All the best,
>
> Bernard
>
>
>
> [image: cid:image002.png@01D36F50.572585A0]
>
> *Bernard Sadaka*
>
> *Information Management Advisor*
>
> Première Urgence - Aide Médicale Internationale
>
> Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
>
> Ain el Remmaneh, Beirut, Lebanon
>
> *E-mail:* lib.ima@xxxxxxxxxx
>
> *Cell:* +961 71 004 881 (208)
>
> *Skype:* imapuami
>
> *Website:* https://www.pu-ami.org
>
>
>
>
>
> *From:* Jason Pickering [mailto:jason.p.pickering@xxxxxxxxx]
> *Sent:* Wednesday, August 1, 2018 11:57 AM
> *To:* lib.ima@xxxxxxxxxx
> *Cc:* dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx>
> *Subject:* Re: [Dhis2-devs] latest 2.28 build not working?
>
>
>
> Hi Bernard,
>
>
>
> It looks to me like the application server does not have a connection to
> the database. Could you restart DHIS2, and post the entire log from the
> point of when you restart Tomcat?
>
>
>
> Best regards,
>
> Jason
>
>
>
>
>
> On Wed, Aug 1, 2018 at 9:52 AM Bernard Sadaka (IM Advisor) <
> lib.ima@xxxxxxxxxx> wrote:
>
> Dear Jason and All,
>
> Any updates on this?
>
> We would really like to update our 2.28 instance and possibly migrate to
> 2.30.
>
> Looking forward to hearing from you.
>
> All the best,
>
> Bernard
>
>
>
> *Bernard Sadaka*
>
> *Information Management Advisor*
>
> Première Urgence - Aide Médicale Internationale
>
> Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
>
> Ain el Remmaneh, Beirut, Lebanon
>
> *E-mail:* lib.ima@xxxxxxxxxx
>
> *Cell:* +961 71 004 881 (208)
>
> *Skype:* imapuami
>
> *Website:* https://www.pu-ami.org
>
>
>
>
>
> *From:* Bernard Sadaka (IM Advisor) [mailto:lib.ima@xxxxxxxxxx]
> *Sent:* Wednesday, July 4, 2018 09:45 AM
> *To:* 'Jason Pickering' <jason.p.pickering@xxxxxxxxx>
> *Cc:* 'dhis2-devs' <dhis2-devs@xxxxxxxxxxxxxxxxxxx>
> *Subject:* RE: [Dhis2-devs] latest 2.28 build not working?
>
>
>
> Dear Jason,
>
> Yes indeed got a few severe errors: (attached are the catalina files of
> June 21 and this morning too)
>
> Appreciate your support.
>
>
>
> //////////////21 June2018 SEVERE////////////////
>
> SEVERE: The web application [] appears to have started a thread named
> [com.google.inject.internal.util.$Finalizer] but has failed to stop it.
> This is very likely to create a memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> clearReferencesThreads
>
> SEVERE: The web application [] appears to have started a thread named
> [Batik CleanerThread] but has failed to stop it. This is very likely to
> create a memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> clearReferencesThreads
>
> SEVERE: The web application [] appears to have started a thread named
> [ForkJoinPool.commonPool-worker-0] but has failed to stop it. This is
> very likely to create a memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@3f0f0f8c]) and a
> value of type [org.springframework.security.core.context.SecurityContextImpl]
> (value [org.springframework.security.core.context.
> SecurityContextImpl@ffffffff: Null authentication]) but failed to remove
> it when the web application was stopped. Threads are going to be renewed
> over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: Unable to determine string representation of value of type
> [org.hisp.dhis.user.User]
>
> org.hibernate.LazyInitializationException: failed to lazily initialize a
> collection of role: org.hisp.dhis.user.User.groups, could not initialize
> proxy - no Session
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.throwLazyInitializationException(
> AbstractPersistentCollection.java:582)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.withTemporarySessionIfNeeded(
> AbstractPersistentCollection.java:201)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.initialize(AbstractPersistentCollection.
> java:561)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
>
> at org.hibernate.collection.internal.PersistentSet.
> toString(PersistentSet.java:299)
>
> at java.lang.String.valueOf(String.java:2994)
>
> at java.lang.StringBuilder.append(StringBuilder.java:131)
>
> at org.hisp.dhis.user.User.toString(User.java:661)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> clearReferences(WebappClassLoaderBase.java:2174)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.stop(
> WebappClassLoaderBase.java:2068)
>
> at org.apache.catalina.loader.WebappLoader.stopInternal(
> WebappLoader.java:661)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.StandardContext.stopInternal(
> StandardContext.java:5822)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1588)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1577)
>
> at java.util.concurrent.FutureTask.run(FutureTask.
> java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1149)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:624)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a
> value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [com.google.inject.internal.InjectorImpl$1] (value
> [com.google.inject.internal.InjectorImpl$1@7d46e98]) and a value of type
> [java.lang.Object[]] (value [[Ljava.lang.Object;@40606281]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: Unable to determine string representation of value of type
> [org.hisp.dhis.user.User]
>
> org.hibernate.LazyInitializationException: failed to lazily initialize a
> collection of role: org.hisp.dhis.user.User.groups, could not initialize
> proxy - no Session
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.throwLazyInitializationException(
> AbstractPersistentCollection.java:582)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.withTemporarySessionIfNeeded(
> AbstractPersistentCollection.java:201)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.initialize(AbstractPersistentCollection.
> java:561)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
>
> at org.hibernate.collection.internal.PersistentSet.
> toString(PersistentSet.java:299)
>
> at java.lang.String.valueOf(String.java:2994)
>
> at java.lang.StringBuilder.append(StringBuilder.java:131)
>
> at org.hisp.dhis.user.User.toString(User.java:661)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> clearReferences(WebappClassLoaderBase.java:2174)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.stop(
> WebappClassLoaderBase.java:2068)
>
> at org.apache.catalina.loader.WebappLoader.stopInternal(
> WebappLoader.java:661)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.StandardContext.stopInternal(
> StandardContext.java:5822)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1588)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1577)
>
> at java.util.concurrent.FutureTask.run(FutureTask.
> java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1149)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:624)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a
> value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: Unable to determine string representation of value of type
> [org.hisp.dhis.user.User]
>
> org.hibernate.LazyInitializationException: failed to lazily initialize a
> collection of role: org.hisp.dhis.user.User.groups, could not initialize
> proxy - no Session
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.throwLazyInitializationException(
> AbstractPersistentCollection.java:582)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.withTemporarySessionIfNeeded(
> AbstractPersistentCollection.java:201)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.initialize(AbstractPersistentCollection.
> java:561)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
>
> at org.hibernate.collection.internal.PersistentSet.
> toString(PersistentSet.java:299)
>
> at java.lang.String.valueOf(String.java:2994)
>
> at java.lang.StringBuilder.append(StringBuilder.java:131)
>
> at org.hisp.dhis.user.User.toString(User.java:661)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> clearReferences(WebappClassLoaderBase.java:2174)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.stop(
> WebappClassLoaderBase.java:2068)
>
> at org.apache.catalina.loader.WebappLoader.stopInternal(
> WebappLoader.java:661)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.StandardContext.stopInternal(
> StandardContext.java:5822)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1588)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1577)
>
> at java.util.concurrent.FutureTask.run(FutureTask.
> java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1149)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:624)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a
> value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [com.google.inject.internal.InjectorImpl$1] (value
> [com.google.inject.internal.InjectorImpl$1@28933881]) and a value of type
> [java.lang.Object[]] (value [[Ljava.lang.Object;@6ba42378]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: Unable to determine string representation of value of type
> [org.hisp.dhis.user.User]
>
> org.hibernate.LazyInitializationException: failed to lazily initialize a
> collection of role: org.hisp.dhis.user.User.groups, could not initialize
> proxy - no Session
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.throwLazyInitializationException(
> AbstractPersistentCollection.java:582)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.withTemporarySessionIfNeeded(
> AbstractPersistentCollection.java:201)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.initialize(AbstractPersistentCollection.
> java:561)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
>
> at org.hibernate.collection.internal.PersistentSet.
> toString(PersistentSet.java:299)
>
> at java.lang.String.valueOf(String.java:2994)
>
> at java.lang.StringBuilder.append(StringBuilder.java:131)
>
> at org.hisp.dhis.user.User.toString(User.java:661)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> clearReferences(WebappClassLoaderBase.java:2174)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.stop(
> WebappClassLoaderBase.java:2068)
>
> at org.apache.catalina.loader.WebappLoader.stopInternal(
> WebappLoader.java:661)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.StandardContext.stopInternal(
> StandardContext.java:5822)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1588)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1577)
>
> at java.util.concurrent.FutureTask.run(FutureTask.
> java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1149)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:624)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a
> value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: Unable to determine string representation of value of type
> [org.hisp.dhis.user.User]
>
> org.hibernate.LazyInitializationException: failed to lazily initialize a
> collection of role: org.hisp.dhis.user.User.groups, could not initialize
> proxy - no Session
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.throwLazyInitializationException(
> AbstractPersistentCollection.java:582)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.withTemporarySessionIfNeeded(
> AbstractPersistentCollection.java:201)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.initialize(AbstractPersistentCollection.
> java:561)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
>
> at org.hibernate.collection.internal.PersistentSet.
> toString(PersistentSet.java:299)
>
> at java.lang.String.valueOf(String.java:2994)
>
> at java.lang.StringBuilder.append(StringBuilder.java:131)
>
> at org.hisp.dhis.user.User.toString(User.java:661)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> clearReferences(WebappClassLoaderBase.java:2174)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.stop(
> WebappClassLoaderBase.java:2068)
>
> at org.apache.catalina.loader.WebappLoader.stopInternal(
> WebappLoader.java:661)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.StandardContext.stopInternal(
> StandardContext.java:5822)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1588)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1577)
>
> at java.util.concurrent.FutureTask.run(FutureTask.
> java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1149)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:624)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a
> value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [com.google.inject.internal.InjectorImpl$1] (value
> [com.google.inject.internal.InjectorImpl$1@7d46e98]) and a value of type
> [java.lang.Object[]] (value [[Ljava.lang.Object;@5f5747c8]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: Unable to determine string representation of value of type
> [org.hisp.dhis.user.User]
>
> org.hibernate.LazyInitializationException: failed to lazily initialize a
> collection of role: org.hisp.dhis.user.User.groups, could not initialize
> proxy - no Session
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.throwLazyInitializationException(
> AbstractPersistentCollection.java:582)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.withTemporarySessionIfNeeded(
> AbstractPersistentCollection.java:201)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.initialize(AbstractPersistentCollection.
> java:561)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
>
> at org.hibernate.collection.internal.PersistentSet.
> toString(PersistentSet.java:299)
>
> at java.lang.String.valueOf(String.java:2994)
>
> at java.lang.StringBuilder.append(StringBuilder.java:131)
>
> at org.hisp.dhis.user.User.toString(User.java:661)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> clearReferences(WebappClassLoaderBase.java:2174)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.stop(
> WebappClassLoaderBase.java:2068)
>
> at org.apache.catalina.loader.WebappLoader.stopInternal(
> WebappLoader.java:661)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.StandardContext.stopInternal(
> StandardContext.java:5822)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1588)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1577)
>
> at java.util.concurrent.FutureTask.run(FutureTask.
> java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1149)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:624)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a
> value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: Unable to determine string representation of value of type
> [org.hisp.dhis.user.User]
>
> org.hibernate.LazyInitializationException: failed to lazily initialize a
> collection of role: org.hisp.dhis.user.User.groups, could not initialize
> proxy - no Session
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.throwLazyInitializationException(
> AbstractPersistentCollection.java:582)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.withTemporarySessionIfNeeded(
> AbstractPersistentCollection.java:201)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.initialize(AbstractPersistentCollection.
> java:561)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
>
> at org.hibernate.collection.internal.PersistentSet.
> toString(PersistentSet.java:299)
>
> at java.lang.String.valueOf(String.java:2994)
>
> at java.lang.StringBuilder.append(StringBuilder.java:131)
>
> at org.hisp.dhis.user.User.toString(User.java:661)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> clearReferences(WebappClassLoaderBase.java:2174)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.stop(
> WebappClassLoaderBase.java:2068)
>
> at org.apache.catalina.loader.WebappLoader.stopInternal(
> WebappLoader.java:661)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.StandardContext.stopInternal(
> StandardContext.java:5822)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1588)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1577)
>
> at java.util.concurrent.FutureTask.run(FutureTask.
> java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1149)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:624)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a
> value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: Unable to determine string representation of value of type
> [org.hisp.dhis.user.User]
>
> org.hibernate.LazyInitializationException: failed to lazily initialize a
> collection of role: org.hisp.dhis.user.User.groups, could not initialize
> proxy - no Session
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.throwLazyInitializationException(
> AbstractPersistentCollection.java:582)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.withTemporarySessionIfNeeded(
> AbstractPersistentCollection.java:201)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.initialize(AbstractPersistentCollection.
> java:561)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
>
> at org.hibernate.collection.internal.PersistentSet.
> toString(PersistentSet.java:299)
>
> at java.lang.String.valueOf(String.java:2994)
>
> at java.lang.StringBuilder.append(StringBuilder.java:131)
>
> at org.hisp.dhis.user.User.toString(User.java:661)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> clearReferences(WebappClassLoaderBase.java:2174)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.stop(
> WebappClassLoaderBase.java:2068)
>
> at org.apache.catalina.loader.WebappLoader.stopInternal(
> WebappLoader.java:661)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.StandardContext.stopInternal(
> StandardContext.java:5822)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1588)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1577)
>
> at java.util.concurrent.FutureTask.run(FutureTask.
> java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1149)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:624)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a
> value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: Unable to determine string representation of value of type
> [org.hisp.dhis.user.User]
>
> org.hibernate.LazyInitializationException: failed to lazily initialize a
> collection of role: org.hisp.dhis.user.User.groups, could not initialize
> proxy - no Session
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.throwLazyInitializationException(
> AbstractPersistentCollection.java:582)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.withTemporarySessionIfNeeded(
> AbstractPersistentCollection.java:201)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.initialize(AbstractPersistentCollection.
> java:561)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
>
> at org.hibernate.collection.internal.PersistentSet.
> toString(PersistentSet.java:299)
>
> at java.lang.String.valueOf(String.java:2994)
>
> at java.lang.StringBuilder.append(StringBuilder.java:131)
>
> at org.hisp.dhis.user.User.toString(User.java:661)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> clearReferences(WebappClassLoaderBase.java:2174)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.stop(
> WebappClassLoaderBase.java:2068)
>
> at org.apache.catalina.loader.WebappLoader.stopInternal(
> WebappLoader.java:661)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.StandardContext.stopInternal(
> StandardContext.java:5822)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1588)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1577)
>
> at java.util.concurrent.FutureTask.run(FutureTask.
> java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1149)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:624)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a
> value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: Unable to determine string representation of value of type
> [org.hisp.dhis.user.User]
>
> org.hibernate.LazyInitializationException: failed to lazily initialize a
> collection of role: org.hisp.dhis.user.User.groups, could not initialize
> proxy - no Session
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.throwLazyInitializationException(
> AbstractPersistentCollection.java:582)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.withTemporarySessionIfNeeded(
> AbstractPersistentCollection.java:201)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.initialize(AbstractPersistentCollection.
> java:561)
>
> at org.hibernate.collection.internal.
> AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
>
> at org.hibernate.collection.internal.PersistentSet.
> toString(PersistentSet.java:299)
>
> at java.lang.String.valueOf(String.java:2994)
>
> at java.lang.StringBuilder.append(StringBuilder.java:131)
>
> at org.hisp.dhis.user.User.toString(User.java:661)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.
> clearReferences(WebappClassLoaderBase.java:2174)
>
> at org.apache.catalina.loader.WebappClassLoaderBase.stop(
> WebappClassLoaderBase.java:2068)
>
> at org.apache.catalina.loader.WebappLoader.stopInternal(
> WebappLoader.java:661)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.StandardContext.stopInternal(
> StandardContext.java:5822)
>
> at org.apache.catalina.util.LifecycleBase.stop(
> LifecycleBase.java:224)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1588)
>
> at org.apache.catalina.core.ContainerBase$StopChild.call(
> ContainerBase.java:1577)
>
> at java.util.concurrent.FutureTask.run(FutureTask.
> java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1149)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:624)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a
> value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> ///////////////////////////////////////////////////
>
>
>
> //////////////////04Jul2018 SEVERE/////////////////////
>
> SEVERE: One or more listeners failed to start. Full details will be found
> in the appropriate container log file
>
> Jul 04, 2018 9:13:10 AM org.apache.catalina.core.StandardContext
> startInternal
>
> SEVERE: Context [] startup failed due to previous errors
>
> Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase
> clearReferencesThreads
>
> SEVERE: The web application [] appears to have started a thread named
> [com.google.inject.internal.util.$Finalizer] but has failed to stop it.
> This is very likely to create a memory leak.
>
> Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [com.google.inject.internal.InjectorImpl$1] (value
> [com.google.inject.internal.InjectorImpl$1@dd1242b]) and a value of type
> [java.lang.Object[]] (value [[Ljava.lang.Object;@49e97e84]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@65f6dd45]) and a
> value of type [org.hibernate.boot.internal.MetadataImpl] (value
> [org.hibernate.boot.internal.MetadataImpl@6b671594]) but failed to remove
> it when the web application was stopped. Threads are going to be renewed
> over time to try and avoid a probable memory leak.
>
> Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@6f9394af]) and a
> value of type [org.springframework.security.core.context.SecurityContextImpl]
> (value [org.springframework.security.core.context.
> SecurityContextImpl@ffffffff: Null authentication]) but failed to remove
> it when the web application was stopped. Threads are going to be renewed
> over time to try and avoid a probable memory leak.
>
> Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase
> checkThreadLocalMapForLeaks
>
> SEVERE: The web application [] created a ThreadLocal with key of type
> [com.google.inject.internal.InjectorImpl$1] (value
> [com.google.inject.internal.InjectorImpl$1@6d8cda87]) and a value of type
> [java.lang.Object[]] (value [[Ljava.lang.Object;@3ec33e86]) but failed to
> remove it when the web application was stopped. Threads are going to be
> renewed over time to try and avoid a probable memory leak.
>
> Jul 04, 2018 9:13:11 AM org.apache.catalina.startup.HostConfig deployWAR
>
> //////////////////////////////////////////////////////////
>
>
>
> Thank you in advance for your help.
>
> All the best,
>
> Bernard
>
>
>
> *Bernard Sadaka*
>
> *Information Management Advisor*
>
> Première Urgence - Aide Médicale Internationale
>
> Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
>
> Ain el Remmaneh, Beirut, Lebanon
>
> *E-mail:* lib.ima@xxxxxxxxxx
>
> *Cell:* +961 71 004 881 (208)
>
> *Skype:* imapuami
>
> *Website:* https://www.pu-ami.org
>
>
>
>
>
> *From:* Jason Pickering [mailto:jason.p.pickering@xxxxxxxxx
> <jason.p.pickering@xxxxxxxxx>]
> *Sent:* Thursday, June 21, 2018 05:23 PM
> *To:* lib.ima@xxxxxxxxxx
> *Cc:* dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx>
> *Subject:* Re: [Dhis2-devs] latest 2.28 build not working?
>
>
>
> Hi Bernard,
>
>
> Could you provide more details? Did you get an error in the server logs?
>
>
>
> Regards,
>
> Jason
>
>
>
> On Thu, Jun 21, 2018 at 2:30 PM Bernard Sadaka (IM Advisor) <
> lib.ima@xxxxxxxxxx> wrote:
>
> Dear Developpers,
>
> Today, 30 minutes ago (noon UTC), I tried to deploy the latest 2.28 .war (
> available at:
>
>
>
>
> --
>
> Jason P. Pickering
> email: jason.p.pickering@xxxxxxxxx
> tel:+46764147049 <+46764147049>
>
>
> _______________________________________________
> Mailing list: https://launchpad.net/~dhis2-devs
> Post to : dhis2-devs@xxxxxxxxxxxxxxxxxxx
> Unsubscribe : https://launchpad.net/~dhis2-devs
> More help : https://help.launchpad.net/ListHelp
>
>
>
>
>
Follow ups
References
