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Re: Server Errors

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Thanks to Lars and Jason, found out that the problem was due to my nginx set-up.
Am now getting into the database and noticed some things that I can't figure ut: 

    1. I can't seem to generate a user with either 'superuser' or
       'system administrator' role when logged in as 'admin'. I also
       can't see the user 'admin' in the list of users. I can see that
       3 users are assigned the role of system administrator and one to
       superuser, but none of the listed users have those roles. Am I
       missing something obvious?
    2. There are a number of charts / maps / pivot tables that can't be
       deleted by the user 'admin'. I presume this is related to the
       user role issue in question 1, or is it?
    3. Creating a chart (or map / pivot table) as the user 'admin'
       seems to generate a system-wide chart by default i.e. all other
       users see that chart. If logged in as 'lower' user role the
       default is to save the favourite for just that user. Why isn't
       the default behaviour the same for different users?
    4. Running the data integrity check throws up a number of errors in
       'Data elements without groups', Data elements in data set but
       not in forms or sections etc. Can these be ignored?

   Thanks for all the great work - am really enjoying version 2.11!

   Cheers
   Dan

On 27/03/13 13:17, Daniel Bridges wrote:
Thanks for the explanations Lars. Will check data integrity when I get the server up and running. If the 404 error isn't related then guess my tomcat server isn't running properly?
Guess I am doing something stupid, but can't see what it is. When I run the startup script and look at the logs in catalina.out I get the following: 

Mar 27, 2013 1:12:23 PM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 601 ms
Mar 27, 2013 1:12:23 PM org.apache.catalina.core.StandardService startInternal 
INFO: Starting service Catalina
Mar 27, 2013 1:12:23 PM org.apache.catalina.core.StandardEngine startInternal 
INFO: Starting Servlet Engine: Apache Tomcat/7.0.26
Mar 27, 2013 1:12:23 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deploying web application archive /home/dhis/tomcat/webapps/ROOT.war
Mar 27, 2013 1:12:24 PM org.apache.catalina.loader.WebappClassLoader validateJarFile INFO: validateJarFile(/home/dhis/tomcat/webapps/ROOT/WEB-INF/lib/geronimo-servlet_2.5_spec-1.1.2.jar) - jar not loaded. See Servlet Spec 2.3, section 9.7.2. Offending class: javax/servlet/Servlet.class * INFO 2013-03-27 13:12:30,869 System property dhis2.home not set (DefaultLocationManager.java [pool-2-thread-1]) * INFO 2013-03-27 13:12:30,873 Environment variable DHIS2_HOME points to /home/dhis/dhis_home (DefaultLocationManager.java [pool-2-thread-1]) * INFO 2013-03-27 13:12:49,219 Found the following message senders: [org.hisp.dhis.message.EmailMessageSender@cccda4] (DefaultMessageService.java [pool-2-thread-1]) * INFO 2013-03-27 13:12:54,797 Scheduled task with key: 0 0 0 ? * 1-6 and cron: 0 0 0 ? * 1-6 (SpringScheduler.java [pool-2-thread-1]) * INFO 2013-03-27 13:12:54,801 Scheduled task with key: 0 0 0 ? * 0 and cron: 0 0 0 ? * 0 (SpringScheduler.java [pool-2-thread-1]) * INFO 2013-03-27 13:12:57,979 Camel context started (DHIS2LifecycleStrategy.java [pool-2-thread-1]) * INFO 2013-03-27 13:12:57,980 Searching for routes in directory: /home/dhis/dhis_home/routes (DHIS2LifecycleStrategy.java [pool-2-thread-1]) * INFO 2013-03-27 13:12:58,499 Executing startup routine [1 of 10, runlevel 1]: TableAlteror (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:00,944 Tables updated (TableAlteror.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:00,945 Executing startup routine [2 of 10, runlevel 1]: MapViewUpgrader (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:01,038 Executing startup routine [3 of 10, runlevel 2]: IdentityPopulator (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:01,297 Executing startup routine [4 of 10, runlevel 2]: PeriodTypePopulator (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:01,306 Executing startup routine [5 of 10, runlevel 3]: TableCreator (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:01,392 Executing startup routine [6 of 10, runlevel 3]: DataElementDefaultDimensionPopulator (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:01,557 Linked default category with default concept (DataElementDefaultDimensionPopulator.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:01,965 Executing startup routine [7 of 10, runlevel 4]: PatientTableAlteror (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:02,352 Executing startup routine [8 of 10, runlevel 5]: OrganisationUnitGroupSetPopulator (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:02,361 Executing startup routine [9 of 10, runlevel 5]: DataEntryFormUpgrader (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:02,408 Upgraded custom case entry form identifiers: 6 (DataEntryFormUpgrader.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:02,420 Executing startup routine [10 of 10, runlevel 6]: ExpressionUpgrader (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) * ERROR 2013-03-27 13:13:02,510 Failed to upgrade expression: ([66.4] * 1.0) + ([191.4] * 1.0) (ExpressionUpgrader.java [pool-2-thread-1]) * ERROR 2013-03-27 13:13:02,510 java.lang.NullPointerException (ExpressionUpgrader.java [pool-2-thread-1]) * INFO 2013-03-27 13:13:02,514 All startup routines done (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) 
Mar 27, 2013 1:13:09 PM org.apache.coyote.AbstractProtocol start
INFO: Starting ProtocolHandler ["http-bio-8080"]
Mar 27, 2013 1:13:09 PM org.apache.catalina.startup.Catalina start
INFO: Server startup in 45441 ms

When I run the shutdown script I get:
Using CATALINA_BASE:   /home/dhis/tomcat
Using CATALINA_HOME:   /usr/share/tomcat7
Using CATALINA_TMPDIR: /home/dhis/tomcat/temp
Using JRE_HOME:        /usr
Using CLASSPATH: /usr/share/tomcat7/bin/bootstrap.jar:/usr/share/tomcat7/bin/tomcat-juli.jar 
Using CATALINA_PID:    /home/dhis/tomcat/work/test-tomcat.pid
Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/var/lib/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false] Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/var/lib/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false] Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/var/lib/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false] Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/var/lib/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false] Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/var/lib/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false] Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/var/lib/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false] 

Hope this is something obvious....

Cheers
Dan

On 27/03/13 11:57, Lars Helge Øverland wrote:

Hi Dan
On Wed, Mar 27, 2013 at 7:41 AM, Daniel Bridges <dbridges@xxxxxxxxxxxxxxxxx <mailto:dbridges@xxxxxxxxxxxxxxxxx>> wrote: 

    Congrats to the team for releasing version 2.11 - it looks great.


Thanks..


    I am trying to upgrade my local server (Ubuntu 12.04 LTS*) *to
    2.11, but am struggling to get it working. First I upgraded the
    server to postgres 9.2. I then created a new database and
    restored the 2.11 demo data into the new database. Everything
    seemed to run fine, although when I start up tomcat I get these
    two errors in catalina.out:

    * ERROR 2013-03-27 08:24:39,596 Failed to upgrade expression:
    ([66.4] * 1.0) + ([191.4] * 1.0) (ExpressionUpgrader.java
    [pool-2-thread-1])
    * ERROR 2013-03-27 08:24:39,597 java.lang.NullPointerException
    (ExpressionUpgrader.java [pool-2-thread-1])
In 2.11 we are using UIDs for indicator and validation rules expressions. This means that the upgrade routine failed for one of the expressions because the formula was invalid. This is mostly often caused by an identifier in the formula pointing to a non-existing data element or category option combination. You can identify this by running "Data integrity checks" in data admin module and look for invalid indicator / validation rule formulas.
I can see we could have given a more descriptive error message her. But the system will ignore it and continue starting up. 


    When I try to login to the server I get a 404 error from nginx.
    Happy to give more info, but does anyone know what these errors
    could relate to and how to solve them.


Would be good with some more info. The above issue should not be related.

    I also noticed that the dhis2-demo.zip file is listed on the
    dhis2.org <http://dhis2.org> download page as 74Mb, but the file
    I downloaded is actually 103Mb in size. Which should it be? Are
    there any md5 / SHA1 checksums that I can check my download against?
I have corrected it now, the size should be 103 Mb. Will add checksums later. 

Thanks for reporting.


Lars




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