dhis2-users team mailing list archive

[Jason Pickering <jason.p.pickering@xxxxxxxxx>]

Hi Isaiah,

Post a bit of your JSON here from  toJSON(list(organisationUnits=new_org),
auto_unbox = TRUE)

One other problem I noticed as well is this

[{"name":"Wikithuki Dispensary","uid":"Bc371uxfYD5"


It should be

[{"name":"Wikithuki Dispensary","id":"Bc371uxfYD5"


Regards,
Jason


On Thu, Feb 15, 2018 at 10:01 AM, Isaiah Nyabuto <isaiahnyabuto@xxxxxxxxx>
wrote:

> Hi Jason,
>
> I get an internal server error code: 500, after trying that. Here is the
> response;
>
> httr::content(r, "text")[1] "{\"httpStatus\":\"Internal Server Error\",\"httpStatusCode\":500,\"status\":\"ERROR\",\"message\":\"Can not instantiate value of type [simple type, class org.hisp.dhis.organisationunit.OrganisationUnit] from String value ('It7fWcKbcZX'); no single-String constructor/factory method\\n at [Source: org.apache.catalina.connector.CoyoteInputStream@1efec811; line: 1, column: 73] (through reference chain: org.hisp.dhis.organisationunit.OrganisationUnit[\\\"parent\\\"])\"}"
>
>
> Thank you.
>
> On Thu, Feb 15, 2018 at 10:36 AM, Jason Pickering <
> jason.p.pickering@xxxxxxxxx> wrote:
>
>> Hi Isiah,
>>
>> The reason for it not working (at least at first glance) is that you are
>> posing to the /api/metadata endpoint. Thus, you need to tell the server
>> what you are trying to import. In this case, its organisation units.
>>
>> I think changing this to
>>
>>   r <- POST(url, authenticate(dest.user, dest.pass),
>>             body = toJSON(list(organisationUnits=new_org), auto_unbox =
>> TRUE),
>>             content_type_json())
>>
>> should work.
>>
>> The example works because the file
>> <https://raw.githubusercontent.com/jason-p-pickering/dhis2-data-munging/master/ous/ous.json>
>> looks like this:
>>
>>
>> {"created":"2016-08-10","organisationUnits":[{"id":"u6yjgvIMzKn",...
>>
>>
>> Hope this helps and best regards,
>>
>> Jason
>>
>>
>>
>>
>>
>> On Thu, Feb 15, 2018 at 6:34 AM, Isaiah Nyabuto <isaiahnyabuto@xxxxxxxxx>
>> wrote:
>>
>>>
>>> Dear Jason and Dhis2 Community,
>>>
>>> I am following your guide on bootstrapping
>>> <https://github.com/jason-p-pickering/dhis2-data-munging/blob/master/bootstrap/bootstrap.Rmd>
>>>  dhis2 with R while trying to import metadata using the API.
>>>
>>> I do not understand why my metadata is not imported. Here are my steps,
>>> any help will be appreciated.
>>>
>>>
>>> head(org)                          name         uid   code      parent             shortname
>>> 1         Wikithuki Dispensary Bc371uxfYD5  16925 vpiZlB5cdK7  Wikithuki Dispensary
>>> 2        Gemifa Medical Clinic Z7Lf1n3Fcpi  22907 mEZBjj4fLBT                Gemifa
>>> 3       Olympus Medical Clinic NAbQdHuaJFK  22906 PeEcMfBchbr               Olympus
>>> 4 Masaba Community Health Unit tYwHeLSnHyb 600616 QR2K4k8VKF1            Masaba CHU
>>> 5        Gatunga Health Centre cmay4WXRmhA  12034 IcAegRcGuV6 Gatunga Health Centre
>>> 6         Cfw Kimangaru Clinic E52UsoBxJVS  11966 vEAFtHnPDrX  CFW Kimangaru Clinic
>>>      description openingdate closedate comment featuretype          coordinates url
>>> 1                         NA        NA               POINT  [37.95263,-0.77819]
>>> 2         Clinic          NA        NA                NONE [34.391914,0.059575]
>>> 3         Clinic          NA        NA                NONE   [34.3994,0.059575]
>>> 4 Community Unit          NA        NA                NONE   [34.46411,0.19358]
>>> 5                         NA        NA               POINT   [37.9423,-0.29656]
>>> 6                         NA        NA               POINT  [37.53009,-0.54506]
>>>   contactperson address email phonenumber
>>> 1            NA      NA    NA          NA
>>> 2            NA      NA    NA          NA
>>> 3            NA      NA    NA          NA
>>> 4            NA      NA    NA          NA
>>> 5            NA      NA    NA          NA
>>> 6            NA      NA    NA          NA
>>>
>>>
>>> I followed the following steps to prepare my df for import.
>>> 1. Removed all the NAs  and columns with entire NAs.
>>>
>>> head(new_org)                          name         uid   code      parent             shortname
>>> 1         Wikithuki Dispensary Bc371uxfYD5  16925 vpiZlB5cdK7  Wikithuki Dispensary
>>> 2        Gemifa Medical Clinic Z7Lf1n3Fcpi  22907 mEZBjj4fLBT                Gemifa
>>> 3       Olympus Medical Clinic NAbQdHuaJFK  22906 PeEcMfBchbr               Olympus
>>> 4 Masaba Community Health Unit tYwHeLSnHyb 600616 QR2K4k8VKF1            Masaba CHU
>>> 5        Gatunga Health Centre cmay4WXRmhA  12034 IcAegRcGuV6 Gatunga Health Centre
>>> 6         Cfw Kimangaru Clinic E52UsoBxJVS  11966 vEAFtHnPDrX  CFW Kimangaru Clinic
>>>      description comment featuretype          coordinates url
>>> 1                              POINT  [37.95263,-0.77819]
>>> 2         Clinic                NONE [34.391914,0.059575]
>>> 3         Clinic                NONE   [34.3994,0.059575]
>>> 4 Community Unit                NONE   [34.46411,0.19358]
>>> 5                              POINT   [37.9423,-0.29656]
>>> 6                              POINT  [37.53009,-0.54506]
>>>
>>>
>>> 3. Then post the data as follows.
>>>
>>> dest.url <- "http://localhost/dhis/";
>>> url <- paste0(dest.url, "api/metadata?importStrategy=C
>>> REATE&atomicMode=NONE")
>>>   r <- POST(url, authenticate(dest.user, dest.pass),
>>>             body = toJSON(new_org, auto_unbox = TRUE),
>>>             content_type_json())
>>>   assertthat::assert_that(r$status_code==200)
>>>
>>> 4. The body looks like.
>>>
>>> jsonlite::toJSON(me, auto_unbox = TRUE)[{"name":"Wikithuki Dispensary","uid":"Bc371uxfYD5","code":"16925","parent":"vpiZlB5cdK7","shortname":"Wikithuki Dispensary","description":"","comment":"","featuretype":"POINT","coordinates":"[37.95263,-0.77819]","url":""},{"name":"Gemifa Medical Clinic","uid":"Z7Lf1n3Fcpi","code":"22907","parent":"mEZBjj4fLBT","shortname":"Gemifa","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.391914,0.059575]","url":""},{"name":"Olympus Medical Clinic","uid":"NAbQdHuaJFK","code":"22906","parent":"PeEcMfBchbr","shortname":"Olympus","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.3994,0.059575]","url":""},{"name":"Masaba Community Health Unit","uid":"tYwHeLSnHyb","code":"600616","parent":"QR2K4k8VKF1","shortname":"Masaba CHU","description":"Community Unit","comment":"","featuretype":"NONE","coordinates":"[34.46411,0.19358]","url":""},{"name":"Gatunga Health Centre","uid":"cmay4WXRmhA","code":"12034","parent":"IcAegRcGuV6","shortname":"Gatunga Health Centre","description":"","comment":"","featuretype":"POINT","coordinates":"[37.9423,-0.29656]","url":""},{"name":"Cfw Kimangaru Clinic","uid":"E52UsoBxJVS","code":"11966","parent":"vEAFtHnPDrX","shortname":"CFW Kimangaru Clinic","description":"","comment":"","featuretype":"POINT","coordinates":"[37.53009,-0.54506]","url":""}]
>>>
>>>
>>> What could be the problem there? I get status 200 and still it doesn't
>>> import.
>>>
>>>
>>> Thank you
>>>
>>>
>>> --
>>> ------------------------------------------------------------
>>> --------------------
>>> Isaiah Nyabuto
>>> +254 729 572 616
>>> Bsc. Health Records Management & Informatics, JKUAT.
>>>
>>
>>
>>
>> --
>> Jason P. Pickering
>> email: jason.p.pickering@xxxxxxxxx
>> tel:+46764147049 <076-414%2070%2049>
>>
>
>
>
> --
> ------------------------------------------------------------
> --------------------
> Isaiah Nyabuto
> +254 729 572 616
> Bsc. Health Records Management & Informatics, JKUAT.
>



-- 
Jason P. Pickering
email: jason.p.pickering@xxxxxxxxx
tel:+46764147049