dhis2-users team mailing list archive

[Isaiah Nyabuto <isaiahnyabuto@xxxxxxxxx>]

Hi Jason,

Here is some bit of my post data.

{"organisationUnits":[{"name":"Wikithuki
Dispensary","uid":"Bc371uxfYD5","code":"16925","parent":"vpiZlB5cdK7","shortname":"Wikithuki
Dispensary","description":"","comment":"","featuretype":"POINT","coordinates":"[37.95263,-0.77819]","url":""},{"name":"Gemifa
Medical Clinic","uid":"Z7Lf1n3Fcpi","code":"22907","parent":"mEZBjj4fLBT","shortname":"Gemifa","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.391914,0.059575]","url":""},{"name":"Olympus
Medical Clinic","uid":"NAbQdHuaJFK","code":"22906","parent":"PeEcMfBchbr","shortname":"Olympus","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.3994,0.059575]","url":""},{"name":"Masaba
Community Health
Unit","uid":"tYwHeLSnHyb","code":"600616","parent":"QR2K4k8VKF1","shortname":"Masaba
CHU","description":"Community
Unit","comment":"","featuretype":"NONE","coordinates":"[34.46411,0.19358]","url":""},{"name":"Gatunga
Health Centre","uid":"cmay4WXRmhA","code":"12034","parent":


After changing the "uid" to "id",  still it doesn't work.

Thank you


On Thu, Feb 15, 2018 at 12:14 PM, Jason Pickering <
jason.p.pickering@xxxxxxxxx> wrote:

> Hi Isaiah,
>
> Post a bit of your JSON here from  toJSON(list(organisationUnits=new_org),
> auto_unbox = TRUE)
>
> One other problem I noticed as well is this
>
> [{"name":"Wikithuki Dispensary","uid":"Bc371uxfYD5"
>
>
> It should be
>
> [{"name":"Wikithuki Dispensary","id":"Bc371uxfYD5"
>
>
> Regards,
> Jason
>
>
> On Thu, Feb 15, 2018 at 10:01 AM, Isaiah Nyabuto <isaiahnyabuto@xxxxxxxxx>
> wrote:
>
>> Hi Jason,
>>
>> I get an internal server error code: 500, after trying that. Here is the
>> response;
>>
>> httr::content(r, "text")[1] "{\"httpStatus\":\"Internal Server Error\",\"httpStatusCode\":500,\"status\":\"ERROR\",\"message\":\"Can not instantiate value of type [simple type, class org.hisp.dhis.organisationunit.OrganisationUnit] from String value ('It7fWcKbcZX'); no single-String constructor/factory method\\n at [Source: org.apache.catalina.connector.CoyoteInputStream@1efec811; line: 1, column: 73] (through reference chain: org.hisp.dhis.organisationunit.OrganisationUnit[\\\"parent\\\"])\"}"
>>
>>
>> Thank you.
>>
>> On Thu, Feb 15, 2018 at 10:36 AM, Jason Pickering <
>> jason.p.pickering@xxxxxxxxx> wrote:
>>
>>> Hi Isiah,
>>>
>>> The reason for it not working (at least at first glance) is that you are
>>> posing to the /api/metadata endpoint. Thus, you need to tell the server
>>> what you are trying to import. In this case, its organisation units.
>>>
>>> I think changing this to
>>>
>>>   r <- POST(url, authenticate(dest.user, dest.pass),
>>>             body = toJSON(list(organisationUnits=new_org), auto_unbox =
>>> TRUE),
>>>             content_type_json())
>>>
>>> should work.
>>>
>>> The example works because the file
>>> <https://raw.githubusercontent.com/jason-p-pickering/dhis2-data-munging/master/ous/ous.json>
>>> looks like this:
>>>
>>>
>>> {"created":"2016-08-10","organisationUnits":[{"id":"u6yjgvIMzKn",...
>>>
>>>
>>> Hope this helps and best regards,
>>>
>>> Jason
>>>
>>>
>>>
>>>
>>>
>>> On Thu, Feb 15, 2018 at 6:34 AM, Isaiah Nyabuto <isaiahnyabuto@xxxxxxxxx
>>> > wrote:
>>>
>>>>
>>>> Dear Jason and Dhis2 Community,
>>>>
>>>> I am following your guide on bootstrapping
>>>> <https://github.com/jason-p-pickering/dhis2-data-munging/blob/master/bootstrap/bootstrap.Rmd>
>>>>  dhis2 with R while trying to import metadata using the API.
>>>>
>>>> I do not understand why my metadata is not imported. Here are my steps,
>>>> any help will be appreciated.
>>>>
>>>>
>>>> head(org)                          name         uid   code      parent             shortname
>>>> 1         Wikithuki Dispensary Bc371uxfYD5  16925 vpiZlB5cdK7  Wikithuki Dispensary
>>>> 2        Gemifa Medical Clinic Z7Lf1n3Fcpi  22907 mEZBjj4fLBT                Gemifa
>>>> 3       Olympus Medical Clinic NAbQdHuaJFK  22906 PeEcMfBchbr               Olympus
>>>> 4 Masaba Community Health Unit tYwHeLSnHyb 600616 QR2K4k8VKF1            Masaba CHU
>>>> 5        Gatunga Health Centre cmay4WXRmhA  12034 IcAegRcGuV6 Gatunga Health Centre
>>>> 6         Cfw Kimangaru Clinic E52UsoBxJVS  11966 vEAFtHnPDrX  CFW Kimangaru Clinic
>>>>      description openingdate closedate comment featuretype          coordinates url
>>>> 1                         NA        NA               POINT  [37.95263,-0.77819]
>>>> 2         Clinic          NA        NA                NONE [34.391914,0.059575]
>>>> 3         Clinic          NA        NA                NONE   [34.3994,0.059575]
>>>> 4 Community Unit          NA        NA                NONE   [34.46411,0.19358]
>>>> 5                         NA        NA               POINT   [37.9423,-0.29656]
>>>> 6                         NA        NA               POINT  [37.53009,-0.54506]
>>>>   contactperson address email phonenumber
>>>> 1            NA      NA    NA          NA
>>>> 2            NA      NA    NA          NA
>>>> 3            NA      NA    NA          NA
>>>> 4            NA      NA    NA          NA
>>>> 5            NA      NA    NA          NA
>>>> 6            NA      NA    NA          NA
>>>>
>>>>
>>>> I followed the following steps to prepare my df for import.
>>>> 1. Removed all the NAs  and columns with entire NAs.
>>>>
>>>> head(new_org)                          name         uid   code      parent             shortname
>>>> 1         Wikithuki Dispensary Bc371uxfYD5  16925 vpiZlB5cdK7  Wikithuki Dispensary
>>>> 2        Gemifa Medical Clinic Z7Lf1n3Fcpi  22907 mEZBjj4fLBT                Gemifa
>>>> 3       Olympus Medical Clinic NAbQdHuaJFK  22906 PeEcMfBchbr               Olympus
>>>> 4 Masaba Community Health Unit tYwHeLSnHyb 600616 QR2K4k8VKF1            Masaba CHU
>>>> 5        Gatunga Health Centre cmay4WXRmhA  12034 IcAegRcGuV6 Gatunga Health Centre
>>>> 6         Cfw Kimangaru Clinic E52UsoBxJVS  11966 vEAFtHnPDrX  CFW Kimangaru Clinic
>>>>      description comment featuretype          coordinates url
>>>> 1                              POINT  [37.95263,-0.77819]
>>>> 2         Clinic                NONE [34.391914,0.059575]
>>>> 3         Clinic                NONE   [34.3994,0.059575]
>>>> 4 Community Unit                NONE   [34.46411,0.19358]
>>>> 5                              POINT   [37.9423,-0.29656]
>>>> 6                              POINT  [37.53009,-0.54506]
>>>>
>>>>
>>>> 3. Then post the data as follows.
>>>>
>>>> dest.url <- "http://localhost/dhis/";
>>>> url <- paste0(dest.url, "api/metadata?importStrategy=C
>>>> REATE&atomicMode=NONE")
>>>>   r <- POST(url, authenticate(dest.user, dest.pass),
>>>>             body = toJSON(new_org, auto_unbox = TRUE),
>>>>             content_type_json())
>>>>   assertthat::assert_that(r$status_code==200)
>>>>
>>>> 4. The body looks like.
>>>>
>>>> jsonlite::toJSON(me, auto_unbox = TRUE)[{"name":"Wikithuki Dispensary","uid":"Bc371uxfYD5","code":"16925","parent":"vpiZlB5cdK7","shortname":"Wikithuki Dispensary","description":"","comment":"","featuretype":"POINT","coordinates":"[37.95263,-0.77819]","url":""},{"name":"Gemifa Medical Clinic","uid":"Z7Lf1n3Fcpi","code":"22907","parent":"mEZBjj4fLBT","shortname":"Gemifa","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.391914,0.059575]","url":""},{"name":"Olympus Medical Clinic","uid":"NAbQdHuaJFK","code":"22906","parent":"PeEcMfBchbr","shortname":"Olympus","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.3994,0.059575]","url":""},{"name":"Masaba Community Health Unit","uid":"tYwHeLSnHyb","code":"600616","parent":"QR2K4k8VKF1","shortname":"Masaba CHU","description":"Community Unit","comment":"","featuretype":"NONE","coordinates":"[34.46411,0.19358]","url":""},{"name":"Gatunga Health Centre","uid":"cmay4WXRmhA","code":"12034","parent":"IcAegRcGuV6","shortname":"Gatunga Health Centre","description":"","comment":"","featuretype":"POINT","coordinates":"[37.9423,-0.29656]","url":""},{"name":"Cfw Kimangaru Clinic","uid":"E52UsoBxJVS","code":"11966","parent":"vEAFtHnPDrX","shortname":"CFW Kimangaru Clinic","description":"","comment":"","featuretype":"POINT","coordinates":"[37.53009,-0.54506]","url":""}]
>>>>
>>>>
>>>> What could be the problem there? I get status 200 and still it doesn't
>>>> import.
>>>>
>>>>
>>>> Thank you
>>>>
>>>>
>>>> --
>>>> ------------------------------------------------------------
>>>> --------------------
>>>> Isaiah Nyabuto
>>>> +254 729 572 616
>>>> Bsc. Health Records Management & Informatics, JKUAT.
>>>>
>>>
>>>
>>>
>>> --
>>> Jason P. Pickering
>>> email: jason.p.pickering@xxxxxxxxx
>>> tel:+46764147049 <076-414%2070%2049>
>>>
>>
>>
>>
>> --
>> ------------------------------------------------------------
>> --------------------
>> Isaiah Nyabuto
>> +254 729 572 616
>> Bsc. Health Records Management & Informatics, JKUAT.
>>
>
>
>
> --
> Jason P. Pickering
> email: jason.p.pickering@xxxxxxxxx
> tel:+46764147049
>



-- 
--------------------------------------------------------------------------------
Isaiah Nyabuto
+254 729 572 616
Bsc. Health Records Management & Informatics, JKUAT.