dhis2-users team mailing list archive
-
dhis2-users team
-
Mailing list archive
-
Message #15202
Re: Posting Metadata in dhis2.
Hi Jason,
Thank you. I am going to look into that keenly.
And If I may ask, is there a way I can extract dhis2 metadata that can be
imported directly or with minimal transformations?
This will be helpful. Thank you.
==========================
Isaiah Nyabuto
+254729572616
Bsc. Health Records Management and Informatics
On Feb 15, 2018 15:16, "Jason Pickering" <jason.p.pickering@xxxxxxxxx>
wrote:
> Hi Isaiah,
>
> You have
>
>
> "parent":"vpiZlB5cdK7"
>
>
> It should be
>
> parent":{"id":"vpiZlB5cdK7"}}
>
> Be sure your JSON structure is exactly as it should be, otherwise, you
> will get those kinds of errors. Study the example here
> <https://raw.githubusercontent.com/jason-p-pickering/dhis2-data-munging/master/ous/ous.json>
> .
>
> Regards,
> Jason
>
>
>
> On Thu, Feb 15, 2018 at 1:07 PM, Isaiah Nyabuto <isaiahnyabuto@xxxxxxxxx>
> wrote:
>
>> Thank you for the tip. It still doesn't work.
>> what does this error mean?
>>
>> httr::content(r, "text")
>>
>> [1] "{\"httpStatus\":\"Internal Server Error\",\"httpStatusCode\":500
>> ,\"status\":\"ERROR\",\"message\":\"Can not instantiate value of type
>> [simple type, class org.hisp.dhis.organisationunit.OrganisationUnit]
>> from String value ('It7fWcKbcZX'); no single-String constructor/factory
>> method\\n at [Source: org.apache.catalina.connector.
>> CoyoteInputStream@1efec811; line: 1, column: 73] (through reference
>> chain: org.hisp.dhis.organisationunit.OrganisationUnit[\\\"parent\\\
>> "])\"}"
>>
>> Anyone?
>>
>> Thank you.
>> ==========================
>> Isaiah Nyabuto
>> +254729572616 <+254%20729%20572616>
>> Bsc. Health Records Management and Informatics
>>
>> On Feb 15, 2018 13:14, "Jason Pickering" <jason.p.pickering@xxxxxxxxx>
>> wrote:
>>
>> All of your fields must have exactly the correct names:
>>
>> shortname -> shortName
>> featuretype-> featureType
>>
>> Keep hacking at it! You will get there!
>>
>> Regards,
>> Jason
>>
>>
>> On Thu, Feb 15, 2018 at 11:08 AM, Isaiah Nyabuto <isaiahnyabuto@xxxxxxxxx
>> > wrote:
>>
>>> Hi Jason,
>>>
>>> Here is some bit of my post data.
>>>
>>> {"organisationUnits":[{"name":"Wikithuki Dispensary","uid":"Bc371uxfYD5","code":"16925","parent":"vpiZlB5cdK7","shortname":"Wikithuki Dispensary","description":"","comment":"","featuretype":"POINT","coordinates":"[37.95263,-0.77819]","url":""},{"name":"Gemifa Medical Clinic","uid":"Z7Lf1n3Fcpi","code":"22907","parent":"mEZBjj4fLBT","shortname":"Gemifa","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.391914,0.059575]","url":""},{"name":"Olympus Medical Clinic","uid":"NAbQdHuaJFK","code":"22906","parent":"PeEcMfBchbr","shortname":"Olympus","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.3994,0.059575]","url":""},{"name":"Masaba Community Health Unit","uid":"tYwHeLSnHyb","code":"600616","parent":"QR2K4k8VKF1","shortname":"Masaba CHU","description":"Community Unit","comment":"","featuretype":"NONE","coordinates":"[34.46411,0.19358]","url":""},{"name":"Gatunga Health Centre","uid":"cmay4WXRmhA","code":"12034","parent":
>>>
>>>
>>> After changing the "uid" to "id", still it doesn't work.
>>>
>>> Thank you
>>>
>>>
>>> On Thu, Feb 15, 2018 at 12:14 PM, Jason Pickering <
>>> jason.p.pickering@xxxxxxxxx> wrote:
>>>
>>>> Hi Isaiah,
>>>>
>>>> Post a bit of your JSON here from toJSON(list(organisationUnits=new_org),
>>>> auto_unbox = TRUE)
>>>>
>>>> One other problem I noticed as well is this
>>>>
>>>> [{"name":"Wikithuki Dispensary","uid":"Bc371uxfYD5"
>>>>
>>>>
>>>> It should be
>>>>
>>>> [{"name":"Wikithuki Dispensary","id":"Bc371uxfYD5"
>>>>
>>>>
>>>> Regards,
>>>> Jason
>>>>
>>>>
>>>> On Thu, Feb 15, 2018 at 10:01 AM, Isaiah Nyabuto <
>>>> isaiahnyabuto@xxxxxxxxx> wrote:
>>>>
>>>>> Hi Jason,
>>>>>
>>>>> I get an internal server error code: 500, after trying that. Here is
>>>>> the response;
>>>>>
>>>>> httr::content(r, "text")[1] "{\"httpStatus\":\"Internal Server Error\",\"httpStatusCode\":500,\"status\":\"ERROR\",\"message\":\"Can not instantiate value of type [simple type, class org.hisp.dhis.organisationunit.OrganisationUnit] from String value ('It7fWcKbcZX'); no single-String constructor/factory method\\n at [Source: org.apache.catalina.connector.CoyoteInputStream@1efec811; line: 1, column: 73] (through reference chain: org.hisp.dhis.organisationunit.OrganisationUnit[\\\"parent\\\"])\"}"
>>>>>
>>>>>
>>>>> Thank you.
>>>>>
>>>>> On Thu, Feb 15, 2018 at 10:36 AM, Jason Pickering <
>>>>> jason.p.pickering@xxxxxxxxx> wrote:
>>>>>
>>>>>> Hi Isiah,
>>>>>>
>>>>>> The reason for it not working (at least at first glance) is that you
>>>>>> are posing to the /api/metadata endpoint. Thus, you need to tell the server
>>>>>> what you are trying to import. In this case, its organisation units.
>>>>>>
>>>>>> I think changing this to
>>>>>>
>>>>>> r <- POST(url, authenticate(dest.user, dest.pass),
>>>>>> body = toJSON(list(organisationUnits=new_org),
>>>>>> auto_unbox = TRUE),
>>>>>> content_type_json())
>>>>>>
>>>>>> should work.
>>>>>>
>>>>>> The example works because the file
>>>>>> <https://raw.githubusercontent.com/jason-p-pickering/dhis2-data-munging/master/ous/ous.json>
>>>>>> looks like this:
>>>>>>
>>>>>>
>>>>>> {"created":"2016-08-10","organisationUnits":[{"id":"u6yjgvIMzKn",...
>>>>>>
>>>>>>
>>>>>> Hope this helps and best regards,
>>>>>>
>>>>>> Jason
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Thu, Feb 15, 2018 at 6:34 AM, Isaiah Nyabuto <
>>>>>> isaiahnyabuto@xxxxxxxxx> wrote:
>>>>>>
>>>>>>>
>>>>>>> Dear Jason and Dhis2 Community,
>>>>>>>
>>>>>>> I am following your guide on bootstrapping
>>>>>>> <https://github.com/jason-p-pickering/dhis2-data-munging/blob/master/bootstrap/bootstrap.Rmd>
>>>>>>> dhis2 with R while trying to import metadata using the API.
>>>>>>>
>>>>>>> I do not understand why my metadata is not imported. Here are my
>>>>>>> steps, any help will be appreciated.
>>>>>>>
>>>>>>>
>>>>>>> head(org) name uid code parent shortname
>>>>>>> 1 Wikithuki Dispensary Bc371uxfYD5 16925 vpiZlB5cdK7 Wikithuki Dispensary
>>>>>>> 2 Gemifa Medical Clinic Z7Lf1n3Fcpi 22907 mEZBjj4fLBT Gemifa
>>>>>>> 3 Olympus Medical Clinic NAbQdHuaJFK 22906 PeEcMfBchbr Olympus
>>>>>>> 4 Masaba Community Health Unit tYwHeLSnHyb 600616 QR2K4k8VKF1 Masaba CHU
>>>>>>> 5 Gatunga Health Centre cmay4WXRmhA 12034 IcAegRcGuV6 Gatunga Health Centre
>>>>>>> 6 Cfw Kimangaru Clinic E52UsoBxJVS 11966 vEAFtHnPDrX CFW Kimangaru Clinic
>>>>>>> description openingdate closedate comment featuretype coordinates url
>>>>>>> 1 NA NA POINT [37.95263,-0.77819]
>>>>>>> 2 Clinic NA NA NONE [34.391914,0.059575]
>>>>>>> 3 Clinic NA NA NONE [34.3994,0.059575]
>>>>>>> 4 Community Unit NA NA NONE [34.46411,0.19358]
>>>>>>> 5 NA NA POINT [37.9423,-0.29656]
>>>>>>> 6 NA NA POINT [37.53009,-0.54506]
>>>>>>> contactperson address email phonenumber
>>>>>>> 1 NA NA NA NA
>>>>>>> 2 NA NA NA NA
>>>>>>> 3 NA NA NA NA
>>>>>>> 4 NA NA NA NA
>>>>>>> 5 NA NA NA NA
>>>>>>> 6 NA NA NA NA
>>>>>>>
>>>>>>>
>>>>>>> I followed the following steps to prepare my df for import.
>>>>>>> 1. Removed all the NAs and columns with entire NAs.
>>>>>>>
>>>>>>> head(new_org) name uid code parent shortname
>>>>>>> 1 Wikithuki Dispensary Bc371uxfYD5 16925 vpiZlB5cdK7 Wikithuki Dispensary
>>>>>>> 2 Gemifa Medical Clinic Z7Lf1n3Fcpi 22907 mEZBjj4fLBT Gemifa
>>>>>>> 3 Olympus Medical Clinic NAbQdHuaJFK 22906 PeEcMfBchbr Olympus
>>>>>>> 4 Masaba Community Health Unit tYwHeLSnHyb 600616 QR2K4k8VKF1 Masaba CHU
>>>>>>> 5 Gatunga Health Centre cmay4WXRmhA 12034 IcAegRcGuV6 Gatunga Health Centre
>>>>>>> 6 Cfw Kimangaru Clinic E52UsoBxJVS 11966 vEAFtHnPDrX CFW Kimangaru Clinic
>>>>>>> description comment featuretype coordinates url
>>>>>>> 1 POINT [37.95263,-0.77819]
>>>>>>> 2 Clinic NONE [34.391914,0.059575]
>>>>>>> 3 Clinic NONE [34.3994,0.059575]
>>>>>>> 4 Community Unit NONE [34.46411,0.19358]
>>>>>>> 5 POINT [37.9423,-0.29656]
>>>>>>> 6 POINT [37.53009,-0.54506]
>>>>>>>
>>>>>>>
>>>>>>> 3. Then post the data as follows.
>>>>>>>
>>>>>>> dest.url <- "http://localhost/dhis/";
>>>>>>> url <- paste0(dest.url, "api/metadata?importStrategy=C
>>>>>>> REATE&atomicMode=NONE")
>>>>>>> r <- POST(url, authenticate(dest.user, dest.pass),
>>>>>>> body = toJSON(new_org, auto_unbox = TRUE),
>>>>>>> content_type_json())
>>>>>>> assertthat::assert_that(r$status_code==200)
>>>>>>>
>>>>>>> 4. The body looks like.
>>>>>>>
>>>>>>> jsonlite::toJSON(me, auto_unbox = TRUE)[{"name":"Wikithuki Dispensary","uid":"Bc371uxfYD5","code":"16925","parent":"vpiZlB5cdK7","shortname":"Wikithuki Dispensary","description":"","comment":"","featuretype":"POINT","coordinates":"[37.95263,-0.77819]","url":""},{"name":"Gemifa Medical Clinic","uid":"Z7Lf1n3Fcpi","code":"22907","parent":"mEZBjj4fLBT","shortname":"Gemifa","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.391914,0.059575]","url":""},{"name":"Olympus Medical Clinic","uid":"NAbQdHuaJFK","code":"22906","parent":"PeEcMfBchbr","shortname":"Olympus","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.3994,0.059575]","url":""},{"name":"Masaba Community Health Unit","uid":"tYwHeLSnHyb","code":"600616","parent":"QR2K4k8VKF1","shortname":"Masaba CHU","description":"Community Unit","comment":"","featuretype":"NONE","coordinates":"[34.46411,0.19358]","url":""},{"name":"Gatunga Health Centre","uid":"cmay4WXRmhA","code":"12034","parent":"IcAegRcGuV6","shortname":"Gatunga Health Centre","description":"","comment":"","featuretype":"POINT","coordinates":"[37.9423,-0.29656]","url":""},{"name":"Cfw Kimangaru Clinic","uid":"E52UsoBxJVS","code":"11966","parent":"vEAFtHnPDrX","shortname":"CFW Kimangaru Clinic","description":"","comment":"","featuretype":"POINT","coordinates":"[37.53009,-0.54506]","url":""}]
>>>>>>>
>>>>>>>
>>>>>>> What could be the problem there? I get status 200 and still it
>>>>>>> doesn't import.
>>>>>>>
>>>>>>>
>>>>>>> Thank you
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> ------------------------------------------------------------
>>>>>>> --------------------
>>>>>>> Isaiah Nyabuto
>>>>>>> +254 729 572 616
>>>>>>> Bsc. Health Records Management & Informatics, JKUAT.
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Jason P. Pickering
>>>>>> email: jason.p.pickering@xxxxxxxxx
>>>>>> tel:+46764147049 <076-414%2070%2049>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> ------------------------------------------------------------
>>>>> --------------------
>>>>> Isaiah Nyabuto
>>>>> +254 729 572 616
>>>>> Bsc. Health Records Management & Informatics, JKUAT.
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Jason P. Pickering
>>>> email: jason.p.pickering@xxxxxxxxx
>>>> tel:+46764147049 <076-414%2070%2049>
>>>>
>>>
>>>
>>>
>>> --
>>> ------------------------------------------------------------
>>> --------------------
>>> Isaiah Nyabuto
>>> +254 729 572 616
>>> Bsc. Health Records Management & Informatics, JKUAT.
>>>
>>
>>
>>
>> --
>> Jason P. Pickering
>> email: jason.p.pickering@xxxxxxxxx
>> tel:+46764147049 <076-414%2070%2049>
>>
>>
>>
>
>
> --
> Jason P. Pickering
> email: jason.p.pickering@xxxxxxxxx
> tel:+46764147049
>
Follow ups
References
