dolfin team mailing list archive

[Anders Logg <logg@xxxxxxxxx>]

What do you get when you type

    make -s -C $PETSC_DIR getincludedirs PETSC_DIR=$PETSC_DIR

?

This is the command run by configure to find out the PETSc flags.

/Anders

On Fri, Apr 07, 2006 at 03:15:26PM -0700, Alireza Forghani wrote:
> I downloaded and installed locally but problem remains.
> when I type "dolfin-config --cflags"
> 
> it returns:
> 
> -I/usr/local/include -I../../src/kernel/common -I../../src/kernel/fem 
> -I../../src/kernel/form -I../../src/kernel/function 
> -I../../src/kernel/io -I../../src/kernel/la -I../../src/kernel/main 
> -I../../src/kernel/math -I../../src/kernel/mesh -I../../src/kernel/nls 
> -I../../src/kernel/ode -I../../src/kernel/pde 
> -I../../src/kernel/quadrature -I../../src/kernel/parameter 
> -I../../src/kernel/log -I/data/daan/FeNics/petsc-2.3.1-p2 
> -I/data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel 
> -I/data/daan/FeNics/petsc-2.3.1-p2/include 
> -I/data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni 
> -I/usr/local/mpich/default/include -I/usr/include/libxml2 
> -I../../src/modules/elasticity -I../../src/modules/elasticity-updated 
> -I../../src/modules/convdiff -I../../src/modules/navierstokes 
> -I../../src/modules/poisson -I../../src/modules/stokes 
> -I../../src/modules/heat -I../../src/kernel/common 
> -I../../src/kernel/fem -I../../src/kernel/form 
> -I../../src/kernel/function -I../../src/kernel/io -I../../src/kernel/la 
> -I../../src/kernel/main -I../../src/kernel/math -I../../src/kernel/mesh 
> -I../../src/kernel/nls -I../../src/kernel/ode -I../../src/kernel/pde 
> -I../../src/kernel/quadrature -I../../src/kernel/parameter 
> -I../../src/kernel/log -I/data/daan/FeNics/petsc-2.3.1-p2 
> -I/data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel 
> -I/data/daan/FeNics/petsc-2.3.1-p2/include 
> -I/data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni 
> -I/usr/local/mpich/default/include -I/usr/include/libxml2 
> -I../../src/modules/
> 
> 
> also "dolfin-config --libs" returns:
> 
> -I/usr/local/include -I../../src/kernel/common -I../../src/kernel/fem 
> -I../../src/kernel/form -I../../src/kernel/function 
> -I../../src/kernel/io -I../../src/kernel/la -I../../src/kernel/main 
> -I../../src/kernel/math -I../../src/kernel/mesh -I../../src/kernel/nls 
> -I../../src/kernel/ode -I../../src/kernel/pde 
> -I../../src/kernel/quadrature -I../../src/kernel/parameter 
> -I../../src/kernel/log -I/data/daan/FeNics/petsc-2.3.1-p2 
> -I/data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel 
> -I/data/daan/FeNics/petsc-2.3.1-p2/include 
> -I/data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni 
> -I/usr/local/mpich/default/include -I/usr/include/libxml2 
> -I../../src/modules/elasticity -I../../src/modules/elasticity-updated 
> -I../../src/modules/convdiff -I../../src/modules/navierstokes 
> -I../../src/modules/poisson -I../../src/modules/stokes 
> -I../../src/modules/heat -I../../src/kernel/common 
> -I../../src/kernel/fem -I../../src/kernel/form 
> -I../../src/kernel/function -I../../src/kernel/io -I../../src/kernel/la 
> -I../../src/kernel/main -I../../src/kernel/math -I../../src/kernel/mesh 
> -I../../src/kernel/nls -I../../src/kernel/ode -I../../src/kernel/pde 
> -I../../src/kernel/quadrature -I../../src/kernel/parameter 
> -I../../src/kernel/log -I/data/daan/FeNics/petsc-2.3.1-p2 
> -I/data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel 
> -I/data/daan/FeNics/petsc-2.3.1-p2/include 
> -I/data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni 
> -I/usr/local/mpich/default/include -I/usr/include/libxml2 
> -I../../src/modules/
> 
> As you see every thing related to PETSC is assigned to "/data/daan...." 
> instead of "data/alireza/PETSC...."
> 
> 
> Alireza Forghani wrote:
> >Hi Garth,
> >
> >I did:
> >
> >[alireza@master alireza]$ env |grep PETSC_DIR
> >PETSC_DIR=/data/alireza/petsc-2.3.1-p11
> >
> >It might be because I haven't installed MPI on my account and didn't 
> >disable it during configuration of MPI. may be it uses MPI of another 
> >account?
> >
> >Alireza
> >
> >------------------------
> >Date: Fri, 07 Apr 2006 21:25:12 +0200
> >From: "Garth N. Wells" <g.n.wells@xxxxxxxxxx>
> >Subject: Re: [DOLFIN-dev] Problems with compiling DOLFIN on Redhat
> >To: Discussion of DOLFIN development <dolfin-dev@xxxxxxxxxx>
> >Message-ID: <1144437912.8606.2.camel@localhost.localdomain>
> >Content-Type: text/plain
> >
> >What do you see if you do
> >
> > >env | grep PETSC_DIR ?
> >
> >Garth
> >
> >
> >On Fri, 2006-04-07 at 10:22 -0700, Alireza Forghani wrote:
> >
> >>> Hi Anders,
> >>> > Configuration says:
> >>> > using PETSC_DIR=/data/alireza/petsc-2.3.1-p11
> >>> disabling compilation of PyDOLFIN
> >>> checking for configarch... yes
> >>> > but exactly after that when I try to compile demo the error appears:
> >>> > > /data/daan/FeNics/petsc-2.3.1-p2: Permission denied
> >>> /data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel: Permission 
> >>denied
> >>> /data/daan/FeNics/petsc-2.3.1-p2/include: Permission denied
> >>> /data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni: Permission denied
> >>> /data/daan/FeNics/petsc-2.3.1-p2: Permission denied
> >>> /data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel: Permission 
> >>denied
> >>> /data/daan/FeNics/petsc-2.3.1-p2/include: Permission denied
> >>> /data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni: Permission denied
> >>> make[3]: *** [main.o] Error 1
> >>> > As you see it tries to use another library.
> >>> > I also used:
> >>> > export PATH="data/alireza/dolfin0.6.1/local/bin:$PATH"
> >>> > and these are what exactly PETSc says after configuration:
> >>> > 
> >>================================================================================= 
> >>
> >>>              Configuring PETSc to compile on your 
> >>system                         > 
> >>================================================================================= 
> >>
> >>> 
> >>Compilers:                                                                
> >>>   C Compiler:         mpicc  -fPIC -Wall -Wshadow -Wwrite-strings 
> >>-fomit-frame-pointer -g3 >   Fortran Compiler:   mpif77  -fPIC -Wall 
> >>-g  > Linkers:
> >>>   Shared linker:   mpicc  -shared  -fPIC -Wall -Wshadow 
> >>-Wwrite-strings -fomit-frame-pointer -g3 >   Dynamic linker:   mpicc  
> >>-shared  -fPIC -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer 
> >>-g3 > PETSc:
> >>>   **
> >>>   ** Before running "make" your PETSC_ARCH must be specified with:
> >>>   **  ** setenv PETSC_ARCH linux-gnu-c-real-debug (csh/tcsh)
> >>>   **  ** PETSC_ARCH=linux-gnu-c-real-debug; export PETSC_ARCH 
> >>(sh/bash)
> >>>   **
> >>>   PETSC_DIR: /data/alireza/petsc-2.3.1-p11
> >>>   **
> >>>   ** Now build and test the libraries with "make all test"
> >>>   **
> >>>   Scalar type:real
> >>>   Clanguage: C
> >>> MPI:
> >>>   PETSc shared libraries: disabled
> >>>   PETSc dynamic libraries: disabled
> >>> X11:
> >>>   Includes: ['-I/usr/X11R6/include']
> >>>   Library: ['-L/usr/X11R6/lib -lX11']
> >>> BLAS/LAPACK: 
> >>-Wl,-rpath,/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug 
> >>-L/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug 
> >>-lflapack 
> >>-Wl,-rpath,/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug 
> >>-L/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug 
> >>-lfblas
> >>> > > Thank You,
> >>> Alireza
> >
> >_______________________________________________
> >DOLFIN-dev mailing list
> >DOLFIN-dev@xxxxxxxxxx
> >http://www.fenics.org/cgi-bin/mailman/listinfo/dolfin-dev
> >
> 
> 
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-- 
Anders Logg
Research Assistant Professor
Toyota Technological Institute at Chicago
http://www.tti-c.org/logg/