dolfin team mailing list archive

["Johannes Ring" <johannr@xxxxxxxxx>]

On Fri, September 19, 2008 22:18, Johan Hake wrote:
> On Friday 19 September 2008 16:28:21 Johannes Ring wrote:
>> On Fri, September 19, 2008 10:44, Johannes Ring wrote:
>> > On Fri, September 19, 2008 10:28, Garth N. Wells wrote:
>> >> Johannes Ring wrote:
>> >>> On Fri, September 19, 2008 10:19, Niclas Jansson wrote:
>> >>>> Johannes Ring wrote:
>> >>>>> On Thu, September 18, 2008 19:43, Anders Logg wrote:
>> >>>>>> On Thu, Sep 18, 2008 at 06:52:30PM +0200, Johannes Ring wrote:
>> >>>>>>> On Thu, September 18, 2008 18:35, Anders Logg wrote:
>> >>>>>>>> We need to add a test/pkgconfig-generator for ParMETIS.
>> >>>>>>>>
>> >>>>>>>> I can build the test program in sandbox/passembly but I need to
>> >>>>>>>> add
>> >>>>>>>>
>> >>>>>>>>   customCxxFlags=-DHAS_PARMETIS=1
>> >>>>>>>>
>> >>>>>>>> to scons when building DOLFIN and then manually add
>> >>>>>>>>
>> >>>>>>>>   -lparmetis -lmetis
>> >>>>>>>>
>> >>>>>>>> when linking the demo.
>> >>>>>>>>
>> >>>>>>>> Can someone who knows the build system better add this?
>> >>>>>>>
>> >>>>>>> I can do that.
>> >>>>>>
>> >>>>>> Thanks.
>> >>>>>>
>> >>>>>>> Do you use the libparmetis-dev package that comes with
>> >>>>>>> Ubuntu or do you build ParMETIS yourself?
>> >>>>>>
>> >>>>>> I use the Ubuntu package.
>> >>>>>
>> >>>>> I have the pkg-config generator for ParMETIS ready but building
>> >>>>> DOLFIN
>> >>>>> fails with the following error message:
>> >>>>>
>> >>>>> mpic++ -o dolfin/mesh/MeshPartition.os -c -Wall -pipe -ansi
>> -DDEBUG
>> >>>>> -g
>> >>>>> -Werror -DNDEBUG -O2 -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK
>> >>>>> -DPACKAGE_VERSION=\"0.8.0\" -DHAS_PETSC=1 -DHAS_SLEPC=1
>> >>>>> -DHAS_SCOTCH=1
>> >>>>> -DHAS_UMFPACK=1 -DHAS_GTS=1 -DHAS_TRILINOS=1 -DHAS_CHOLMOD=1
>> >>>>> -DHAS_MTL4=1
>> >>>>> -DHAS_PARMETIS=1 -fPIC -I. -I/usr/local/include
>> >>>>> -I/usr/include/libxml2
>> >>>>> -I/usr/lib/petsc/bmake/linux-gnu-c-opt -I/usr/lib/petsc/include
>> >>>>> -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -Idolfin
>> >>>>> -I/home/johannr/src/slepc-2.3.3
>> >>>>> -I/home/johannr/src/slepc-2.3.3/include
>> >>>>> -I/usr/lib/petsc/bmake/linux-gnu-c-opt -I/usr/lib/petsc/include
>> >>>>> -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -Idolfin
>> >>>>> -I/home/johannr/src/scotch_5.0/bin -I/usr/include/suitesparse
>> >>>>> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include
>> >>>>> -I/home/johannr/src/trilinos-8.0.3/local/include
>> >>>>> -I/usr/include/suitesparse -I/home/johannr/src/svn/mtl4
>> >>>>> dolfin/mesh/MeshPartition.cpp
>> >>>>> dolfin/mesh/MeshPartition.cpp: In static member function ?static
>> void
>> >>>>> dolfin::MeshPartition::partitionGeom(dolfin::Mesh&,
>> >>>>> dolfin::MeshFunction<unsigned int>&)?:
>> >>>>> dolfin/mesh/MeshPartition.cpp:102: error: ?idxtype? was not
>> declared
>> >>>>> in
>> >>>>> this scope
>> >>>>> dolfin/mesh/MeshPartition.cpp:102: error: ?vtxdist? was not
>> declared
>> >>>>> in
>> >>>>> this scope
>> >>>>> dolfin/mesh/MeshPartition.cpp:102: error: expected type-specifier
>> >>>>> before
>> >>>>> ?idxtype?
>> >>>>> dolfin/mesh/MeshPartition.cpp:102: error: expected `;' before
>> >>>>> ?idxtype?
>> >>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected type-specifier
>> >>>>> before
>> >>>>> ?idxtype?
>> >>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `>' before
>> >>>>> ?idxtype?
>> >>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `(' before
>> >>>>> ?idxtype?
>> >>>>> dolfin/mesh/MeshPartition.cpp:103: error: expected `)' before ?;?
>> >>>>> token
>> >>>>> dolfin/mesh/MeshPartition.cpp:117: error: expected `;' before
>> ?gdim?
>> >>>>> dolfin/mesh/MeshPartition.cpp:118: error: ?part? was not declared
>> in
>> >>>>> this
>> >>>>> scope
>> >>>>> dolfin/mesh/MeshPartition.cpp:118: error: expected type-specifier
>> >>>>> before
>> >>>>> ?idxtype?
>> >>>>> dolfin/mesh/MeshPartition.cpp:118: error: expected `;' before
>> >>>>> ?idxtype?
>> >>>>> dolfin/mesh/MeshPartition.cpp:119: error: ?gdim? was not declared
>> in
>> >>>>> this
>> >>>>> scope
>> >>>>> dolfin/mesh/MeshPartition.cpp:134: error: ?ParMETIS_V3_PartGeom?
>> was
>> >>>>> not
>> >>>>> declared in this scope
>> >>>>> dolfin/mesh/MeshPartition.cpp:143: error: type ?<type error>?
>> >>>>> argument
>> >>>>> given to ?delete?, expected pointer
>> >>>>> dolfin/mesh/MeshPartition.cpp:144: error: type ?<type error>?
>> >>>>> argument
>> >>>>> given to ?delete?, expected pointer
>> >>>>> scons: *** [dolfin/mesh/MeshPartition.os] Error 1
>> >>>>> scons: building terminated because of errors.
>> >>>>>
>> >>>>> Any ideas?
>> >>>>>
>> >>>>> Johannes
>> >>>>
>> >>>> Seams like it doesn't find parmetis.h
>> >>>
>> >>> Yes, it seems so, but parmetis.h is located under /usr/include so it
>> >>> can't
>> >>> be missed. And it doesn't fail on this part of MeshPartition.cpp:
>> >>>
>> >>> #ifdef HAS_PARMETIS
>> >>> #include <parmetis.h>
>> >>> #endif
>> >>
>> >> Should it be
>> >>
>> >>    extern "C"
>> >>    {
>> >>    #ifdef HAS_PARMETIS
>> >>    #include <parmetis.h>
>> >>    #endif
>> >>    }
>> >> ?
>> >
>> > I tried it but it gave me the same error message.
>>
>> It seems to be a problem with SCOTCH. DOLFIN builds fine when I disable
>> SCOTCH.
>
> I have scotch 5.1 and it works fine here.

I had SCOTCH 5.0 but upgrading to 5.1 still gives me the error.

Johannes